Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01542

Experiment: M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01541 and MPMX20_01542 are separated by 70 nucleotidesMPMX20_01542 and MPMX20_01543 are separated by 267 nucleotidesMPMX20_01543 and MPMX20_01544 are separated by 28 nucleotides MPMX20_01541: MPMX20_01541 - Macrolide export ATP-binding/permease protein MacB, at 1,612,499 to 1,614,439 _01541 MPMX20_01542: MPMX20_01542 - Cold shock-like protein CspD, at 1,614,510 to 1,614,731 _01542 MPMX20_01543: MPMX20_01543 - ATP-dependent Clp protease adapter protein ClpS, at 1,614,999 to 1,615,319 _01543 MPMX20_01544: MPMX20_01544 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,615,348 to 1,617,627 _01544 Position (kb) 1614 1615Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1613.513 kb on + strand, within MPMX20_01541at 1613.628 kb on - strand, within MPMX20_01541at 1613.641 kb on - strand, within MPMX20_01541at 1613.642 kb on - strand, within MPMX20_01541at 1613.659 kb on + strand, within MPMX20_01541at 1613.659 kb on + strand, within MPMX20_01541at 1613.667 kb on - strand, within MPMX20_01541at 1613.757 kb on + strand, within MPMX20_01541at 1613.757 kb on + strand, within MPMX20_01541at 1613.757 kb on + strand, within MPMX20_01541at 1613.757 kb on + strand, within MPMX20_01541at 1613.765 kb on - strand, within MPMX20_01541at 1613.765 kb on - strand, within MPMX20_01541at 1613.773 kb on + strand, within MPMX20_01541at 1613.840 kb on - strand, within MPMX20_01541at 1613.849 kb on + strand, within MPMX20_01541at 1613.855 kb on + strand, within MPMX20_01541at 1613.862 kb on - strand, within MPMX20_01541at 1613.878 kb on + strand, within MPMX20_01541at 1613.890 kb on + strand, within MPMX20_01541at 1613.893 kb on - strand, within MPMX20_01541at 1613.898 kb on - strand, within MPMX20_01541at 1613.902 kb on + strand, within MPMX20_01541at 1613.902 kb on + strand, within MPMX20_01541at 1613.912 kb on - strand, within MPMX20_01541at 1613.927 kb on + strand, within MPMX20_01541at 1613.935 kb on - strand, within MPMX20_01541at 1613.935 kb on - strand, within MPMX20_01541at 1614.042 kb on - strand, within MPMX20_01541at 1614.053 kb on + strand, within MPMX20_01541at 1614.059 kb on - strand, within MPMX20_01541at 1614.059 kb on - strand, within MPMX20_01541at 1614.061 kb on - strand, within MPMX20_01541at 1614.110 kb on - strand, within MPMX20_01541at 1614.221 kb on + strand, within MPMX20_01541at 1614.229 kb on - strand, within MPMX20_01541at 1614.239 kb on - strand, within MPMX20_01541at 1614.252 kb on + strandat 1614.252 kb on + strandat 1614.435 kb on - strandat 1614.495 kb on + strandat 1614.503 kb on - strandat 1614.503 kb on - strandat 1614.503 kb on - strandat 1614.545 kb on + strand, within MPMX20_01542at 1614.609 kb on - strand, within MPMX20_01542at 1614.642 kb on - strand, within MPMX20_01542at 1614.681 kb on - strand, within MPMX20_01542at 1614.699 kb on - strand, within MPMX20_01542at 1614.718 kb on - strandat 1614.718 kb on - strandat 1614.743 kb on - strandat 1614.743 kb on - strandat 1614.786 kb on + strandat 1614.794 kb on - strandat 1614.796 kb on + strandat 1614.796 kb on + strandat 1614.796 kb on + strandat 1614.796 kb on + strandat 1614.804 kb on - strandat 1614.804 kb on - strandat 1614.804 kb on - strandat 1614.804 kb on - strandat 1614.901 kb on + strandat 1614.978 kb on + strandat 1615.015 kb on - strandat 1615.079 kb on + strand, within MPMX20_01543at 1615.102 kb on - strand, within MPMX20_01543at 1615.252 kb on - strand, within MPMX20_01543at 1615.392 kb on - strandat 1615.414 kb on + strandat 1615.417 kb on - strandat 1615.424 kb on - strandat 1615.424 kb on - strandat 1615.455 kb on - strandat 1615.519 kb on + strandat 1615.562 kb on + strandat 1615.562 kb on + strandat 1615.629 kb on + strand, within MPMX20_01544at 1615.645 kb on - strand, within MPMX20_01544at 1615.672 kb on - strand, within MPMX20_01544

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,613,513 + MPMX20_01541 0.52 +0.2
1,613,628 - MPMX20_01541 0.58 -1.1
1,613,641 - MPMX20_01541 0.59 -1.7
1,613,642 - MPMX20_01541 0.59 +0.2
1,613,659 + MPMX20_01541 0.60 -0.2
1,613,659 + MPMX20_01541 0.60 +2.9
1,613,667 - MPMX20_01541 0.60 -0.3
1,613,757 + MPMX20_01541 0.65 +0.3
1,613,757 + MPMX20_01541 0.65 -0.1
1,613,757 + MPMX20_01541 0.65 +0.7
1,613,757 + MPMX20_01541 0.65 -0.8
1,613,765 - MPMX20_01541 0.65 +1.1
1,613,765 - MPMX20_01541 0.65 -1.4
1,613,773 + MPMX20_01541 0.66 +0.8
1,613,840 - MPMX20_01541 0.69 -1.5
1,613,849 + MPMX20_01541 0.70 -2.2
1,613,855 + MPMX20_01541 0.70 -0.1
1,613,862 - MPMX20_01541 0.70 -1.0
1,613,878 + MPMX20_01541 0.71 -1.2
1,613,890 + MPMX20_01541 0.72 -1.3
1,613,893 - MPMX20_01541 0.72 -0.3
1,613,898 - MPMX20_01541 0.72 +1.2
1,613,902 + MPMX20_01541 0.72 -0.5
1,613,902 + MPMX20_01541 0.72 -0.5
1,613,912 - MPMX20_01541 0.73 +0.4
1,613,927 + MPMX20_01541 0.74 -0.5
1,613,935 - MPMX20_01541 0.74 +1.2
1,613,935 - MPMX20_01541 0.74 -0.5
1,614,042 - MPMX20_01541 0.79 +0.9
1,614,053 + MPMX20_01541 0.80 +1.2
1,614,059 - MPMX20_01541 0.80 -0.2
1,614,059 - MPMX20_01541 0.80 -0.4
1,614,061 - MPMX20_01541 0.80 +1.3
1,614,110 - MPMX20_01541 0.83 -1.9
1,614,221 + MPMX20_01541 0.89 +1.0
1,614,229 - MPMX20_01541 0.89 -1.5
1,614,239 - MPMX20_01541 0.90 +0.4
1,614,252 + -0.0
1,614,252 + -0.2
1,614,435 - -2.5
1,614,495 + -1.9
1,614,503 - +0.2
1,614,503 - -1.3
1,614,503 - +0.2
1,614,545 + MPMX20_01542 0.16 -1.8
1,614,609 - MPMX20_01542 0.45 -0.2
1,614,642 - MPMX20_01542 0.59 -0.2
1,614,681 - MPMX20_01542 0.77 -0.8
1,614,699 - MPMX20_01542 0.85 -0.1
1,614,718 - +0.0
1,614,718 - -0.2
1,614,743 - -0.4
1,614,743 - +1.0
1,614,786 + -0.5
1,614,794 - +0.3
1,614,796 + +0.8
1,614,796 + +0.7
1,614,796 + +0.0
1,614,796 + -2.1
1,614,804 - +0.2
1,614,804 - +1.0
1,614,804 - +0.2
1,614,804 - -1.0
1,614,901 + +0.8
1,614,978 + -0.4
1,615,015 - -1.1
1,615,079 + MPMX20_01543 0.25 -1.8
1,615,102 - MPMX20_01543 0.32 +2.2
1,615,252 - MPMX20_01543 0.79 +4.1
1,615,392 - +2.4
1,615,414 + -0.7
1,615,417 - -0.3
1,615,424 - -0.3
1,615,424 - -0.2
1,615,455 - +0.6
1,615,519 + -2.8
1,615,562 + -0.2
1,615,562 + -1.8
1,615,629 + MPMX20_01544 0.12 -0.3
1,615,645 - MPMX20_01544 0.13 -2.2
1,615,672 - MPMX20_01544 0.14 -0.8

Or see this region's nucleotide sequence