Experiment: M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01224 and MPMX20_01225 are separated by 20 nucleotides MPMX20_01225 and MPMX20_01226 are separated by 131 nucleotides MPMX20_01226 and MPMX20_01227 are separated by 163 nucleotides
MPMX20_01224: MPMX20_01224 - Acetolactate synthase, catabolic, at 1,280,386 to 1,282,065
_01224
MPMX20_01225: MPMX20_01225 - Diacetyl reductase [(S)-acetoin forming], at 1,282,086 to 1,282,856
_01225
MPMX20_01226: MPMX20_01226 - hypothetical protein, at 1,282,988 to 1,283,461
_01226
MPMX20_01227: MPMX20_01227 - hypothetical protein, at 1,283,625 to 1,284,323
_01227
Position (kb)
1282
1283 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1281.107 kb on - strand, within MPMX20_01224 at 1281.195 kb on - strand, within MPMX20_01224 at 1281.206 kb on - strand, within MPMX20_01224 at 1281.245 kb on + strand, within MPMX20_01224 at 1281.294 kb on - strand, within MPMX20_01224 at 1281.316 kb on - strand, within MPMX20_01224 at 1281.343 kb on - strand, within MPMX20_01224 at 1281.354 kb on - strand, within MPMX20_01224 at 1281.365 kb on + strand, within MPMX20_01224 at 1281.373 kb on - strand, within MPMX20_01224 at 1281.398 kb on + strand, within MPMX20_01224 at 1281.406 kb on - strand, within MPMX20_01224 at 1281.406 kb on - strand, within MPMX20_01224 at 1281.406 kb on - strand, within MPMX20_01224 at 1281.406 kb on - strand, within MPMX20_01224 at 1281.598 kb on + strand, within MPMX20_01224 at 1281.598 kb on + strand, within MPMX20_01224 at 1281.638 kb on - strand, within MPMX20_01224 at 1281.638 kb on - strand, within MPMX20_01224 at 1281.640 kb on + strand, within MPMX20_01224 at 1281.671 kb on - strand, within MPMX20_01224 at 1281.694 kb on + strand, within MPMX20_01224 at 1281.695 kb on - strand, within MPMX20_01224 at 1281.749 kb on - strand, within MPMX20_01224 at 1281.749 kb on - strand, within MPMX20_01224 at 1281.753 kb on + strand, within MPMX20_01224 at 1281.800 kb on + strand, within MPMX20_01224 at 1281.865 kb on + strand, within MPMX20_01224 at 1281.950 kb on + strand at 1281.958 kb on - strand at 1281.958 kb on - strand at 1282.049 kb on - strand at 1282.110 kb on + strand at 1282.110 kb on + strand at 1282.111 kb on + strand at 1282.116 kb on + strand at 1282.116 kb on + strand at 1282.116 kb on + strand at 1282.116 kb on + strand at 1282.118 kb on - strand at 1282.124 kb on - strand at 1282.182 kb on + strand, within MPMX20_01225 at 1282.311 kb on + strand, within MPMX20_01225 at 1282.311 kb on + strand, within MPMX20_01225 at 1282.314 kb on - strand, within MPMX20_01225 at 1282.314 kb on - strand, within MPMX20_01225 at 1282.389 kb on - strand, within MPMX20_01225 at 1282.435 kb on - strand, within MPMX20_01225 at 1282.522 kb on + strand, within MPMX20_01225 at 1282.567 kb on + strand, within MPMX20_01225 at 1282.567 kb on + strand, within MPMX20_01225 at 1282.575 kb on - strand, within MPMX20_01225 at 1282.734 kb on + strand, within MPMX20_01225 at 1282.800 kb on - strand at 1282.837 kb on + strand at 1282.837 kb on + strand at 1282.837 kb on + strand at 1282.845 kb on - strand at 1282.886 kb on - strand at 1282.898 kb on - strand at 1282.898 kb on - strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.930 kb on + strand at 1282.938 kb on - strand at 1282.938 kb on - strand at 1282.938 kb on - strand at 1282.938 kb on - strand at 1282.938 kb on - strand at 1282.943 kb on - strand at 1282.983 kb on - strand at 1282.985 kb on + strand at 1282.985 kb on - strand at 1282.993 kb on - strand at 1283.018 kb on + strand at 1283.018 kb on + strand at 1283.088 kb on + strand, within MPMX20_01226 at 1283.096 kb on - strand, within MPMX20_01226 at 1283.096 kb on - strand, within MPMX20_01226 at 1283.096 kb on - strand, within MPMX20_01226 at 1283.096 kb on - strand, within MPMX20_01226 at 1283.121 kb on + strand, within MPMX20_01226 at 1283.122 kb on - strand, within MPMX20_01226 at 1283.191 kb on + strand, within MPMX20_01226 at 1283.191 kb on + strand, within MPMX20_01226 at 1283.199 kb on - strand, within MPMX20_01226 at 1283.207 kb on - strand, within MPMX20_01226 at 1283.250 kb on + strand, within MPMX20_01226 at 1283.302 kb on - strand, within MPMX20_01226 at 1283.307 kb on - strand, within MPMX20_01226 at 1283.372 kb on + strand, within MPMX20_01226 at 1283.447 kb on - strand at 1283.593 kb on + strand at 1283.607 kb on - strand at 1283.607 kb on - strand at 1283.632 kb on + strand at 1283.720 kb on + strand, within MPMX20_01227 at 1283.720 kb on + strand, within MPMX20_01227 at 1283.728 kb on - strand, within MPMX20_01227 at 1283.728 kb on - strand, within MPMX20_01227 at 1283.774 kb on + strand, within MPMX20_01227 at 1283.833 kb on + strand, within MPMX20_01227 at 1283.833 kb on + strand, within MPMX20_01227 at 1283.841 kb on - strand, within MPMX20_01227 at 1283.845 kb on + strand, within MPMX20_01227
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,281,107 - MPMX20_01224 0.43 +0.1 1,281,195 - MPMX20_01224 0.48 +0.1 1,281,206 - MPMX20_01224 0.49 +1.1 1,281,245 + MPMX20_01224 0.51 +0.2 1,281,294 - MPMX20_01224 0.54 +0.6 1,281,316 - MPMX20_01224 0.55 -1.2 1,281,343 - MPMX20_01224 0.57 -1.0 1,281,354 - MPMX20_01224 0.58 -0.0 1,281,365 + MPMX20_01224 0.58 -1.5 1,281,373 - MPMX20_01224 0.59 +0.2 1,281,398 + MPMX20_01224 0.60 -0.5 1,281,406 - MPMX20_01224 0.61 +0.5 1,281,406 - MPMX20_01224 0.61 +0.3 1,281,406 - MPMX20_01224 0.61 -0.5 1,281,406 - MPMX20_01224 0.61 -1.6 1,281,598 + MPMX20_01224 0.72 -1.2 1,281,598 + MPMX20_01224 0.72 -0.1 1,281,638 - MPMX20_01224 0.75 -0.6 1,281,638 - MPMX20_01224 0.75 -0.8 1,281,640 + MPMX20_01224 0.75 +0.7 1,281,671 - MPMX20_01224 0.76 -0.9 1,281,694 + MPMX20_01224 0.78 -0.5 1,281,695 - MPMX20_01224 0.78 -1.8 1,281,749 - MPMX20_01224 0.81 -0.9 1,281,749 - MPMX20_01224 0.81 -0.3 1,281,753 + MPMX20_01224 0.81 -0.5 1,281,800 + MPMX20_01224 0.84 -0.6 1,281,865 + MPMX20_01224 0.88 -0.2 1,281,950 + -1.5 1,281,958 - -1.5 1,281,958 - -2.6 1,282,049 - +0.9 1,282,110 + -0.9 1,282,110 + +1.1 1,282,111 + -0.4 1,282,116 + +0.1 1,282,116 + +1.8 1,282,116 + -1.6 1,282,116 + -2.0 1,282,118 - +0.7 1,282,124 - +0.0 1,282,182 + MPMX20_01225 0.12 -0.7 1,282,311 + MPMX20_01225 0.29 -1.4 1,282,311 + MPMX20_01225 0.29 -1.0 1,282,314 - MPMX20_01225 0.30 -1.2 1,282,314 - MPMX20_01225 0.30 -0.5 1,282,389 - MPMX20_01225 0.39 -0.5 1,282,435 - MPMX20_01225 0.45 -0.9 1,282,522 + MPMX20_01225 0.57 -2.0 1,282,567 + MPMX20_01225 0.62 -0.4 1,282,567 + MPMX20_01225 0.62 +1.2 1,282,575 - MPMX20_01225 0.63 +2.1 1,282,734 + MPMX20_01225 0.84 +8.2 1,282,800 - +3.3 1,282,837 + +0.0 1,282,837 + -1.3 1,282,837 + -3.0 1,282,845 - -0.7 1,282,886 - -0.3 1,282,898 - -1.2 1,282,898 - -1.3 1,282,930 + -1.5 1,282,930 + -1.5 1,282,930 + +0.1 1,282,930 + -0.9 1,282,930 + -0.9 1,282,930 + -0.6 1,282,930 + +0.7 1,282,930 + +0.2 1,282,930 + +0.5 1,282,938 - +0.2 1,282,938 - +0.2 1,282,938 - +1.1 1,282,938 - -0.0 1,282,938 - +1.4 1,282,943 - +1.1 1,282,983 - -0.3 1,282,985 + +0.1 1,282,985 - +0.2 1,282,993 - -0.7 1,283,018 + -0.3 1,283,018 + +0.8 1,283,088 + MPMX20_01226 0.21 -1.1 1,283,096 - MPMX20_01226 0.23 +0.4 1,283,096 - MPMX20_01226 0.23 +0.6 1,283,096 - MPMX20_01226 0.23 -0.7 1,283,096 - MPMX20_01226 0.23 +1.5 1,283,121 + MPMX20_01226 0.28 +0.7 1,283,122 - MPMX20_01226 0.28 -0.8 1,283,191 + MPMX20_01226 0.43 -2.5 1,283,191 + MPMX20_01226 0.43 -2.4 1,283,199 - MPMX20_01226 0.45 +0.9 1,283,207 - MPMX20_01226 0.46 -0.3 1,283,250 + MPMX20_01226 0.55 +0.2 1,283,302 - MPMX20_01226 0.66 -1.7 1,283,307 - MPMX20_01226 0.67 -0.5 1,283,372 + MPMX20_01226 0.81 +1.1 1,283,447 - +0.2 1,283,593 + +0.4 1,283,607 - -1.6 1,283,607 - +1.0 1,283,632 + -2.7 1,283,720 + MPMX20_01227 0.14 -2.2 1,283,720 + MPMX20_01227 0.14 +0.4 1,283,728 - MPMX20_01227 0.15 +3.3 1,283,728 - MPMX20_01227 0.15 +3.7 1,283,774 + MPMX20_01227 0.21 +1.1 1,283,833 + MPMX20_01227 0.30 +1.1 1,283,833 + MPMX20_01227 0.30 -0.9 1,283,841 - MPMX20_01227 0.31 -1.5 1,283,845 + MPMX20_01227 0.31 -1.0
Or see this region's nucleotide sequence