Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03171

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03170 and MPMX20_03171 are separated by 146 nucleotidesMPMX20_03171 and MPMX20_03172 are separated by 75 nucleotidesMPMX20_03172 and MPMX20_03173 overlap by 1 nucleotides MPMX20_03170: MPMX20_03170 - Magnesium transporter MgtE, at 3,329,001 to 3,330,437 _03170 MPMX20_03171: MPMX20_03171 - ABC transporter ATP-binding/permease protein YojI, at 3,330,584 to 3,332,227 _03171 MPMX20_03172: MPMX20_03172 - Alpha-ketoglutarate-dependent dioxygenase AlkB, at 3,332,303 to 3,332,953 _03172 MPMX20_03173: MPMX20_03173 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 3,332,953 to 3,334,011 _03173 Position (kb) 3330 3331 3332 3333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3329.651 kb on - strand, within MPMX20_03170at 3329.807 kb on + strand, within MPMX20_03170at 3329.809 kb on + strand, within MPMX20_03170at 3329.815 kb on - strand, within MPMX20_03170at 3329.817 kb on - strand, within MPMX20_03170at 3329.824 kb on + strand, within MPMX20_03170at 3329.842 kb on - strand, within MPMX20_03170at 3329.957 kb on - strand, within MPMX20_03170at 3330.039 kb on + strand, within MPMX20_03170at 3330.047 kb on - strand, within MPMX20_03170at 3330.153 kb on - strand, within MPMX20_03170at 3330.314 kb on + strandat 3330.327 kb on - strandat 3330.328 kb on + strandat 3330.341 kb on + strandat 3330.349 kb on - strandat 3330.401 kb on - strandat 3330.407 kb on + strandat 3330.415 kb on - strandat 3330.472 kb on - strandat 3330.479 kb on - strandat 3330.484 kb on - strandat 3330.578 kb on - strandat 3330.604 kb on + strandat 3330.636 kb on - strandat 3330.963 kb on + strand, within MPMX20_03171at 3330.963 kb on + strand, within MPMX20_03171at 3330.963 kb on + strand, within MPMX20_03171at 3330.963 kb on + strand, within MPMX20_03171at 3330.963 kb on + strand, within MPMX20_03171at 3330.963 kb on + strand, within MPMX20_03171at 3330.971 kb on + strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3330.971 kb on - strand, within MPMX20_03171at 3331.064 kb on + strand, within MPMX20_03171at 3331.077 kb on - strand, within MPMX20_03171at 3331.245 kb on + strand, within MPMX20_03171at 3331.245 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.255 kb on + strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.263 kb on - strand, within MPMX20_03171at 3331.281 kb on + strand, within MPMX20_03171at 3331.302 kb on + strand, within MPMX20_03171at 3331.310 kb on - strand, within MPMX20_03171at 3331.341 kb on + strand, within MPMX20_03171at 3331.391 kb on - strand, within MPMX20_03171at 3331.391 kb on - strand, within MPMX20_03171at 3331.391 kb on - strand, within MPMX20_03171at 3331.483 kb on + strand, within MPMX20_03171at 3331.491 kb on - strand, within MPMX20_03171at 3331.491 kb on - strand, within MPMX20_03171at 3331.491 kb on - strand, within MPMX20_03171at 3331.491 kb on - strand, within MPMX20_03171at 3331.491 kb on - strand, within MPMX20_03171at 3331.512 kb on + strand, within MPMX20_03171at 3331.515 kb on - strand, within MPMX20_03171at 3331.531 kb on + strand, within MPMX20_03171at 3331.531 kb on + strand, within MPMX20_03171at 3331.531 kb on + strand, within MPMX20_03171at 3331.531 kb on + strand, within MPMX20_03171at 3331.539 kb on - strand, within MPMX20_03171at 3331.539 kb on - strand, within MPMX20_03171at 3331.547 kb on - strand, within MPMX20_03171at 3331.582 kb on - strand, within MPMX20_03171at 3331.609 kb on - strand, within MPMX20_03171at 3331.676 kb on - strand, within MPMX20_03171at 3331.694 kb on - strand, within MPMX20_03171at 3331.755 kb on + strand, within MPMX20_03171at 3331.849 kb on - strand, within MPMX20_03171at 3331.853 kb on - strand, within MPMX20_03171at 3331.854 kb on - strand, within MPMX20_03171at 3331.867 kb on - strand, within MPMX20_03171at 3331.892 kb on + strand, within MPMX20_03171at 3331.900 kb on - strand, within MPMX20_03171at 3331.900 kb on - strand, within MPMX20_03171at 3331.902 kb on + strand, within MPMX20_03171at 3331.917 kb on + strand, within MPMX20_03171at 3331.917 kb on + strand, within MPMX20_03171at 3331.917 kb on + strand, within MPMX20_03171at 3331.925 kb on - strand, within MPMX20_03171at 3331.925 kb on - strand, within MPMX20_03171at 3331.927 kb on + strand, within MPMX20_03171at 3332.048 kb on - strand, within MPMX20_03171at 3332.099 kb on - strandat 3332.142 kb on - strandat 3332.170 kb on - strandat 3332.170 kb on - strandat 3332.219 kb on - strandat 3332.353 kb on - strandat 3332.418 kb on + strand, within MPMX20_03172at 3332.448 kb on - strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.506 kb on + strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.514 kb on - strand, within MPMX20_03172at 3332.552 kb on - strand, within MPMX20_03172at 3332.558 kb on - strand, within MPMX20_03172at 3332.573 kb on - strand, within MPMX20_03172at 3332.724 kb on + strand, within MPMX20_03172at 3332.724 kb on + strand, within MPMX20_03172at 3332.732 kb on - strand, within MPMX20_03172at 3332.745 kb on + strand, within MPMX20_03172at 3332.750 kb on + strand, within MPMX20_03172at 3332.750 kb on + strand, within MPMX20_03172at 3332.750 kb on + strand, within MPMX20_03172at 3332.755 kb on + strand, within MPMX20_03172at 3332.758 kb on - strand, within MPMX20_03172at 3332.786 kb on + strand, within MPMX20_03172at 3332.794 kb on + strand, within MPMX20_03172at 3332.800 kb on - strand, within MPMX20_03172at 3332.829 kb on + strand, within MPMX20_03172at 3332.875 kb on + strand, within MPMX20_03172at 3332.890 kb on + strandat 3333.005 kb on + strandat 3333.140 kb on + strand, within MPMX20_03173at 3333.201 kb on + strand, within MPMX20_03173

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,329,651 - MPMX20_03170 0.45 +1.8
3,329,807 + MPMX20_03170 0.56 -0.7
3,329,809 + MPMX20_03170 0.56 -0.4
3,329,815 - MPMX20_03170 0.57 -0.2
3,329,817 - MPMX20_03170 0.57 -0.7
3,329,824 + MPMX20_03170 0.57 +0.5
3,329,842 - MPMX20_03170 0.59 -1.1
3,329,957 - MPMX20_03170 0.67 -0.7
3,330,039 + MPMX20_03170 0.72 -1.2
3,330,047 - MPMX20_03170 0.73 -1.4
3,330,153 - MPMX20_03170 0.80 -0.1
3,330,314 + -0.6
3,330,327 - -0.3
3,330,328 + +0.2
3,330,341 + -1.0
3,330,349 - +0.4
3,330,401 - -1.4
3,330,407 + +0.1
3,330,415 - +0.6
3,330,472 - +0.7
3,330,479 - -0.0
3,330,484 - -1.2
3,330,578 - -0.4
3,330,604 + -1.2
3,330,636 - +2.1
3,330,963 + MPMX20_03171 0.23 -0.3
3,330,963 + MPMX20_03171 0.23 +1.5
3,330,963 + MPMX20_03171 0.23 -0.9
3,330,963 + MPMX20_03171 0.23 -2.6
3,330,963 + MPMX20_03171 0.23 +0.3
3,330,963 + MPMX20_03171 0.23 -1.5
3,330,971 + MPMX20_03171 0.24 -0.9
3,330,971 - MPMX20_03171 0.24 -1.4
3,330,971 - MPMX20_03171 0.24 +0.5
3,330,971 - MPMX20_03171 0.24 +1.1
3,330,971 - MPMX20_03171 0.24 +0.1
3,330,971 - MPMX20_03171 0.24 +0.3
3,330,971 - MPMX20_03171 0.24 -1.1
3,331,064 + MPMX20_03171 0.29 +2.6
3,331,077 - MPMX20_03171 0.30 -0.5
3,331,245 + MPMX20_03171 0.40 +0.8
3,331,245 + MPMX20_03171 0.40 +0.4
3,331,255 + MPMX20_03171 0.41 -0.2
3,331,255 + MPMX20_03171 0.41 -0.2
3,331,255 + MPMX20_03171 0.41 -0.0
3,331,255 + MPMX20_03171 0.41 +0.5
3,331,255 + MPMX20_03171 0.41 -0.7
3,331,255 + MPMX20_03171 0.41 -0.8
3,331,255 + MPMX20_03171 0.41 -0.5
3,331,255 + MPMX20_03171 0.41 +2.1
3,331,255 + MPMX20_03171 0.41 +1.6
3,331,263 - MPMX20_03171 0.41 -0.1
3,331,263 - MPMX20_03171 0.41 -0.2
3,331,263 - MPMX20_03171 0.41 -2.0
3,331,263 - MPMX20_03171 0.41 +1.0
3,331,263 - MPMX20_03171 0.41 -0.7
3,331,263 - MPMX20_03171 0.41 -1.1
3,331,263 - MPMX20_03171 0.41 -2.0
3,331,263 - MPMX20_03171 0.41 -1.1
3,331,263 - MPMX20_03171 0.41 -1.3
3,331,263 - MPMX20_03171 0.41 +0.4
3,331,281 + MPMX20_03171 0.42 -1.0
3,331,302 + MPMX20_03171 0.44 +0.1
3,331,310 - MPMX20_03171 0.44 -1.6
3,331,341 + MPMX20_03171 0.46 -0.4
3,331,391 - MPMX20_03171 0.49 +0.9
3,331,391 - MPMX20_03171 0.49 +0.1
3,331,391 - MPMX20_03171 0.49 -0.2
3,331,483 + MPMX20_03171 0.55 -0.4
3,331,491 - MPMX20_03171 0.55 -0.8
3,331,491 - MPMX20_03171 0.55 -0.1
3,331,491 - MPMX20_03171 0.55 +0.8
3,331,491 - MPMX20_03171 0.55 +1.6
3,331,491 - MPMX20_03171 0.55 +1.1
3,331,512 + MPMX20_03171 0.56 -0.6
3,331,515 - MPMX20_03171 0.57 -0.2
3,331,531 + MPMX20_03171 0.58 +0.9
3,331,531 + MPMX20_03171 0.58 -0.6
3,331,531 + MPMX20_03171 0.58 -0.4
3,331,531 + MPMX20_03171 0.58 -0.2
3,331,539 - MPMX20_03171 0.58 +3.2
3,331,539 - MPMX20_03171 0.58 -1.3
3,331,547 - MPMX20_03171 0.59 +0.8
3,331,582 - MPMX20_03171 0.61 +0.1
3,331,609 - MPMX20_03171 0.62 +0.1
3,331,676 - MPMX20_03171 0.66 -1.9
3,331,694 - MPMX20_03171 0.68 +0.1
3,331,755 + MPMX20_03171 0.71 -0.7
3,331,849 - MPMX20_03171 0.77 +0.5
3,331,853 - MPMX20_03171 0.77 +2.2
3,331,854 - MPMX20_03171 0.77 +0.2
3,331,867 - MPMX20_03171 0.78 +0.8
3,331,892 + MPMX20_03171 0.80 +0.4
3,331,900 - MPMX20_03171 0.80 -0.7
3,331,900 - MPMX20_03171 0.80 -2.1
3,331,902 + MPMX20_03171 0.80 +0.2
3,331,917 + MPMX20_03171 0.81 -0.6
3,331,917 + MPMX20_03171 0.81 +0.9
3,331,917 + MPMX20_03171 0.81 -0.5
3,331,925 - MPMX20_03171 0.82 -1.4
3,331,925 - MPMX20_03171 0.82 +0.2
3,331,927 + MPMX20_03171 0.82 +0.1
3,332,048 - MPMX20_03171 0.89 -2.6
3,332,099 - -0.7
3,332,142 - -0.2
3,332,170 - +0.8
3,332,170 - -1.3
3,332,219 - -1.2
3,332,353 - -0.3
3,332,418 + MPMX20_03172 0.18 +0.2
3,332,448 - MPMX20_03172 0.22 +0.3
3,332,506 + MPMX20_03172 0.31 -2.1
3,332,506 + MPMX20_03172 0.31 +0.2
3,332,506 + MPMX20_03172 0.31 -0.5
3,332,506 + MPMX20_03172 0.31 -1.1
3,332,506 + MPMX20_03172 0.31 -1.5
3,332,506 + MPMX20_03172 0.31 +0.3
3,332,514 - MPMX20_03172 0.32 +0.5
3,332,514 - MPMX20_03172 0.32 +0.9
3,332,514 - MPMX20_03172 0.32 +2.8
3,332,514 - MPMX20_03172 0.32 +1.1
3,332,514 - MPMX20_03172 0.32 +2.0
3,332,514 - MPMX20_03172 0.32 +1.5
3,332,552 - MPMX20_03172 0.38 +1.0
3,332,558 - MPMX20_03172 0.39 +0.3
3,332,573 - MPMX20_03172 0.41 -0.9
3,332,724 + MPMX20_03172 0.65 +0.8
3,332,724 + MPMX20_03172 0.65 -1.1
3,332,732 - MPMX20_03172 0.66 -1.0
3,332,745 + MPMX20_03172 0.68 -0.8
3,332,750 + MPMX20_03172 0.69 -2.7
3,332,750 + MPMX20_03172 0.69 +0.3
3,332,750 + MPMX20_03172 0.69 +3.1
3,332,755 + MPMX20_03172 0.69 -1.5
3,332,758 - MPMX20_03172 0.70 +0.4
3,332,786 + MPMX20_03172 0.74 -0.3
3,332,794 + MPMX20_03172 0.75 +0.1
3,332,800 - MPMX20_03172 0.76 +0.8
3,332,829 + MPMX20_03172 0.81 -0.3
3,332,875 + MPMX20_03172 0.88 +0.3
3,332,890 + -0.4
3,333,005 + -1.0
3,333,140 + MPMX20_03173 0.18 -2.5
3,333,201 + MPMX20_03173 0.23 -1.2

Or see this region's nucleotide sequence