Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03170 and MPMX20_03171 are separated by 146 nucleotides MPMX20_03171 and MPMX20_03172 are separated by 75 nucleotides MPMX20_03172 and MPMX20_03173 overlap by 1 nucleotides
MPMX20_03170: MPMX20_03170 - Magnesium transporter MgtE, at 3,329,001 to 3,330,437
_03170
MPMX20_03171: MPMX20_03171 - ABC transporter ATP-binding/permease protein YojI, at 3,330,584 to 3,332,227
_03171
MPMX20_03172: MPMX20_03172 - Alpha-ketoglutarate-dependent dioxygenase AlkB, at 3,332,303 to 3,332,953
_03172
MPMX20_03173: MPMX20_03173 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 3,332,953 to 3,334,011
_03173
Position (kb)
3330
3331
3332
3333 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3329.651 kb on - strand, within MPMX20_03170 at 3329.807 kb on + strand, within MPMX20_03170 at 3329.809 kb on + strand, within MPMX20_03170 at 3329.815 kb on - strand, within MPMX20_03170 at 3329.817 kb on - strand, within MPMX20_03170 at 3329.824 kb on + strand, within MPMX20_03170 at 3329.842 kb on - strand, within MPMX20_03170 at 3329.957 kb on - strand, within MPMX20_03170 at 3330.039 kb on + strand, within MPMX20_03170 at 3330.047 kb on - strand, within MPMX20_03170 at 3330.153 kb on - strand, within MPMX20_03170 at 3330.314 kb on + strand at 3330.327 kb on - strand at 3330.328 kb on + strand at 3330.341 kb on + strand at 3330.349 kb on - strand at 3330.401 kb on - strand at 3330.407 kb on + strand at 3330.415 kb on - strand at 3330.472 kb on - strand at 3330.479 kb on - strand at 3330.484 kb on - strand at 3330.578 kb on - strand at 3330.604 kb on + strand at 3330.636 kb on - strand at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.971 kb on + strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3331.064 kb on + strand, within MPMX20_03171 at 3331.077 kb on - strand, within MPMX20_03171 at 3331.245 kb on + strand, within MPMX20_03171 at 3331.245 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.281 kb on + strand, within MPMX20_03171 at 3331.302 kb on + strand, within MPMX20_03171 at 3331.310 kb on - strand, within MPMX20_03171 at 3331.341 kb on + strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171 at 3331.483 kb on + strand, within MPMX20_03171 at 3331.491 kb on - strand, within MPMX20_03171 at 3331.491 kb on - strand, within MPMX20_03171 at 3331.491 kb on - strand, within MPMX20_03171 at 3331.491 kb on - strand, within MPMX20_03171 at 3331.491 kb on - strand, within MPMX20_03171 at 3331.512 kb on + strand, within MPMX20_03171 at 3331.515 kb on - strand, within MPMX20_03171 at 3331.531 kb on + strand, within MPMX20_03171 at 3331.531 kb on + strand, within MPMX20_03171 at 3331.531 kb on + strand, within MPMX20_03171 at 3331.531 kb on + strand, within MPMX20_03171 at 3331.539 kb on - strand, within MPMX20_03171 at 3331.539 kb on - strand, within MPMX20_03171 at 3331.547 kb on - strand, within MPMX20_03171 at 3331.582 kb on - strand, within MPMX20_03171 at 3331.609 kb on - strand, within MPMX20_03171 at 3331.676 kb on - strand, within MPMX20_03171 at 3331.694 kb on - strand, within MPMX20_03171 at 3331.755 kb on + strand, within MPMX20_03171 at 3331.849 kb on - strand, within MPMX20_03171 at 3331.853 kb on - strand, within MPMX20_03171 at 3331.854 kb on - strand, within MPMX20_03171 at 3331.867 kb on - strand, within MPMX20_03171 at 3331.892 kb on + strand, within MPMX20_03171 at 3331.900 kb on - strand, within MPMX20_03171 at 3331.900 kb on - strand, within MPMX20_03171 at 3331.902 kb on + strand, within MPMX20_03171 at 3331.917 kb on + strand, within MPMX20_03171 at 3331.917 kb on + strand, within MPMX20_03171 at 3331.917 kb on + strand, within MPMX20_03171 at 3331.925 kb on - strand, within MPMX20_03171 at 3331.925 kb on - strand, within MPMX20_03171 at 3331.927 kb on + strand, within MPMX20_03171 at 3332.048 kb on - strand, within MPMX20_03171 at 3332.099 kb on - strand at 3332.142 kb on - strand at 3332.170 kb on - strand at 3332.170 kb on - strand at 3332.219 kb on - strand at 3332.353 kb on - strand at 3332.418 kb on + strand, within MPMX20_03172 at 3332.448 kb on - strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.506 kb on + strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.514 kb on - strand, within MPMX20_03172 at 3332.552 kb on - strand, within MPMX20_03172 at 3332.558 kb on - strand, within MPMX20_03172 at 3332.573 kb on - strand, within MPMX20_03172 at 3332.724 kb on + strand, within MPMX20_03172 at 3332.724 kb on + strand, within MPMX20_03172 at 3332.732 kb on - strand, within MPMX20_03172 at 3332.745 kb on + strand, within MPMX20_03172 at 3332.750 kb on + strand, within MPMX20_03172 at 3332.750 kb on + strand, within MPMX20_03172 at 3332.750 kb on + strand, within MPMX20_03172 at 3332.755 kb on + strand, within MPMX20_03172 at 3332.758 kb on - strand, within MPMX20_03172 at 3332.786 kb on + strand, within MPMX20_03172 at 3332.794 kb on + strand, within MPMX20_03172 at 3332.800 kb on - strand, within MPMX20_03172 at 3332.829 kb on + strand, within MPMX20_03172 at 3332.875 kb on + strand, within MPMX20_03172 at 3332.890 kb on + strand at 3333.005 kb on + strand at 3333.140 kb on + strand, within MPMX20_03173 at 3333.201 kb on + strand, within MPMX20_03173
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,329,651 - MPMX20_03170 0.45 +1.8 3,329,807 + MPMX20_03170 0.56 -0.7 3,329,809 + MPMX20_03170 0.56 -0.4 3,329,815 - MPMX20_03170 0.57 -0.2 3,329,817 - MPMX20_03170 0.57 -0.7 3,329,824 + MPMX20_03170 0.57 +0.5 3,329,842 - MPMX20_03170 0.59 -1.1 3,329,957 - MPMX20_03170 0.67 -0.7 3,330,039 + MPMX20_03170 0.72 -1.2 3,330,047 - MPMX20_03170 0.73 -1.4 3,330,153 - MPMX20_03170 0.80 -0.1 3,330,314 + -0.6 3,330,327 - -0.3 3,330,328 + +0.2 3,330,341 + -1.0 3,330,349 - +0.4 3,330,401 - -1.4 3,330,407 + +0.1 3,330,415 - +0.6 3,330,472 - +0.7 3,330,479 - -0.0 3,330,484 - -1.2 3,330,578 - -0.4 3,330,604 + -1.2 3,330,636 - +2.1 3,330,963 + MPMX20_03171 0.23 -0.3 3,330,963 + MPMX20_03171 0.23 +1.5 3,330,963 + MPMX20_03171 0.23 -0.9 3,330,963 + MPMX20_03171 0.23 -2.6 3,330,963 + MPMX20_03171 0.23 +0.3 3,330,963 + MPMX20_03171 0.23 -1.5 3,330,971 + MPMX20_03171 0.24 -0.9 3,330,971 - MPMX20_03171 0.24 -1.4 3,330,971 - MPMX20_03171 0.24 +0.5 3,330,971 - MPMX20_03171 0.24 +1.1 3,330,971 - MPMX20_03171 0.24 +0.1 3,330,971 - MPMX20_03171 0.24 +0.3 3,330,971 - MPMX20_03171 0.24 -1.1 3,331,064 + MPMX20_03171 0.29 +2.6 3,331,077 - MPMX20_03171 0.30 -0.5 3,331,245 + MPMX20_03171 0.40 +0.8 3,331,245 + MPMX20_03171 0.40 +0.4 3,331,255 + MPMX20_03171 0.41 -0.2 3,331,255 + MPMX20_03171 0.41 -0.2 3,331,255 + MPMX20_03171 0.41 -0.0 3,331,255 + MPMX20_03171 0.41 +0.5 3,331,255 + MPMX20_03171 0.41 -0.7 3,331,255 + MPMX20_03171 0.41 -0.8 3,331,255 + MPMX20_03171 0.41 -0.5 3,331,255 + MPMX20_03171 0.41 +2.1 3,331,255 + MPMX20_03171 0.41 +1.6 3,331,263 - MPMX20_03171 0.41 -0.1 3,331,263 - MPMX20_03171 0.41 -0.2 3,331,263 - MPMX20_03171 0.41 -2.0 3,331,263 - MPMX20_03171 0.41 +1.0 3,331,263 - MPMX20_03171 0.41 -0.7 3,331,263 - MPMX20_03171 0.41 -1.1 3,331,263 - MPMX20_03171 0.41 -2.0 3,331,263 - MPMX20_03171 0.41 -1.1 3,331,263 - MPMX20_03171 0.41 -1.3 3,331,263 - MPMX20_03171 0.41 +0.4 3,331,281 + MPMX20_03171 0.42 -1.0 3,331,302 + MPMX20_03171 0.44 +0.1 3,331,310 - MPMX20_03171 0.44 -1.6 3,331,341 + MPMX20_03171 0.46 -0.4 3,331,391 - MPMX20_03171 0.49 +0.9 3,331,391 - MPMX20_03171 0.49 +0.1 3,331,391 - MPMX20_03171 0.49 -0.2 3,331,483 + MPMX20_03171 0.55 -0.4 3,331,491 - MPMX20_03171 0.55 -0.8 3,331,491 - MPMX20_03171 0.55 -0.1 3,331,491 - MPMX20_03171 0.55 +0.8 3,331,491 - MPMX20_03171 0.55 +1.6 3,331,491 - MPMX20_03171 0.55 +1.1 3,331,512 + MPMX20_03171 0.56 -0.6 3,331,515 - MPMX20_03171 0.57 -0.2 3,331,531 + MPMX20_03171 0.58 +0.9 3,331,531 + MPMX20_03171 0.58 -0.6 3,331,531 + MPMX20_03171 0.58 -0.4 3,331,531 + MPMX20_03171 0.58 -0.2 3,331,539 - MPMX20_03171 0.58 +3.2 3,331,539 - MPMX20_03171 0.58 -1.3 3,331,547 - MPMX20_03171 0.59 +0.8 3,331,582 - MPMX20_03171 0.61 +0.1 3,331,609 - MPMX20_03171 0.62 +0.1 3,331,676 - MPMX20_03171 0.66 -1.9 3,331,694 - MPMX20_03171 0.68 +0.1 3,331,755 + MPMX20_03171 0.71 -0.7 3,331,849 - MPMX20_03171 0.77 +0.5 3,331,853 - MPMX20_03171 0.77 +2.2 3,331,854 - MPMX20_03171 0.77 +0.2 3,331,867 - MPMX20_03171 0.78 +0.8 3,331,892 + MPMX20_03171 0.80 +0.4 3,331,900 - MPMX20_03171 0.80 -0.7 3,331,900 - MPMX20_03171 0.80 -2.1 3,331,902 + MPMX20_03171 0.80 +0.2 3,331,917 + MPMX20_03171 0.81 -0.6 3,331,917 + MPMX20_03171 0.81 +0.9 3,331,917 + MPMX20_03171 0.81 -0.5 3,331,925 - MPMX20_03171 0.82 -1.4 3,331,925 - MPMX20_03171 0.82 +0.2 3,331,927 + MPMX20_03171 0.82 +0.1 3,332,048 - MPMX20_03171 0.89 -2.6 3,332,099 - -0.7 3,332,142 - -0.2 3,332,170 - +0.8 3,332,170 - -1.3 3,332,219 - -1.2 3,332,353 - -0.3 3,332,418 + MPMX20_03172 0.18 +0.2 3,332,448 - MPMX20_03172 0.22 +0.3 3,332,506 + MPMX20_03172 0.31 -2.1 3,332,506 + MPMX20_03172 0.31 +0.2 3,332,506 + MPMX20_03172 0.31 -0.5 3,332,506 + MPMX20_03172 0.31 -1.1 3,332,506 + MPMX20_03172 0.31 -1.5 3,332,506 + MPMX20_03172 0.31 +0.3 3,332,514 - MPMX20_03172 0.32 +0.5 3,332,514 - MPMX20_03172 0.32 +0.9 3,332,514 - MPMX20_03172 0.32 +2.8 3,332,514 - MPMX20_03172 0.32 +1.1 3,332,514 - MPMX20_03172 0.32 +2.0 3,332,514 - MPMX20_03172 0.32 +1.5 3,332,552 - MPMX20_03172 0.38 +1.0 3,332,558 - MPMX20_03172 0.39 +0.3 3,332,573 - MPMX20_03172 0.41 -0.9 3,332,724 + MPMX20_03172 0.65 +0.8 3,332,724 + MPMX20_03172 0.65 -1.1 3,332,732 - MPMX20_03172 0.66 -1.0 3,332,745 + MPMX20_03172 0.68 -0.8 3,332,750 + MPMX20_03172 0.69 -2.7 3,332,750 + MPMX20_03172 0.69 +0.3 3,332,750 + MPMX20_03172 0.69 +3.1 3,332,755 + MPMX20_03172 0.69 -1.5 3,332,758 - MPMX20_03172 0.70 +0.4 3,332,786 + MPMX20_03172 0.74 -0.3 3,332,794 + MPMX20_03172 0.75 +0.1 3,332,800 - MPMX20_03172 0.76 +0.8 3,332,829 + MPMX20_03172 0.81 -0.3 3,332,875 + MPMX20_03172 0.88 +0.3 3,332,890 + -0.4 3,333,005 + -1.0 3,333,140 + MPMX20_03173 0.18 -2.5 3,333,201 + MPMX20_03173 0.23 -1.2
Or see this region's nucleotide sequence