Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01786 and MPMX20_01787 overlap by 20 nucleotides MPMX20_01787 and MPMX20_01788 are separated by 11 nucleotides MPMX20_01788 and MPMX20_01789 are separated by 34 nucleotides MPMX20_01789 and MPMX20_01790 are separated by 238 nucleotides
MPMX20_01786: MPMX20_01786 - Penicillin-binding protein activator LpoB, at 1,877,719 to 1,878,366
_01786
MPMX20_01787: MPMX20_01787 - Thiamine kinase, at 1,878,347 to 1,879,171
_01787
MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208
_01788
MPMX20_01789: MPMX20_01789 - hypothetical protein, at 1,880,243 to 1,880,785
_01789
MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328
_01790
Position (kb)
1879
1880
1881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1878.194 kb on + strand, within MPMX20_01786 at 1878.194 kb on + strand, within MPMX20_01786 at 1878.197 kb on - strand, within MPMX20_01786 at 1878.252 kb on + strand, within MPMX20_01786 at 1878.312 kb on + strand at 1878.355 kb on + strand at 1878.427 kb on + strand at 1878.488 kb on - strand, within MPMX20_01787 at 1878.488 kb on - strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.608 kb on + strand, within MPMX20_01787 at 1878.616 kb on + strand, within MPMX20_01787 at 1878.616 kb on - strand, within MPMX20_01787 at 1878.616 kb on - strand, within MPMX20_01787 at 1878.661 kb on + strand, within MPMX20_01787 at 1878.681 kb on - strand, within MPMX20_01787 at 1878.698 kb on + strand, within MPMX20_01787 at 1878.719 kb on - strand, within MPMX20_01787 at 1878.765 kb on + strand, within MPMX20_01787 at 1878.765 kb on + strand, within MPMX20_01787 at 1878.780 kb on + strand, within MPMX20_01787 at 1878.780 kb on + strand, within MPMX20_01787 at 1878.827 kb on + strand, within MPMX20_01787 at 1878.844 kb on + strand, within MPMX20_01787 at 1878.852 kb on - strand, within MPMX20_01787 at 1878.896 kb on - strand, within MPMX20_01787 at 1878.932 kb on + strand, within MPMX20_01787 at 1878.961 kb on + strand, within MPMX20_01787 at 1879.140 kb on - strand at 1879.174 kb on - strand at 1879.174 kb on - strand at 1879.176 kb on + strand at 1879.180 kb on + strand at 1879.211 kb on + strand at 1879.219 kb on - strand at 1879.231 kb on - strand at 1879.233 kb on + strand at 1879.320 kb on - strand, within MPMX20_01788 at 1879.326 kb on + strand, within MPMX20_01788 at 1879.391 kb on - strand, within MPMX20_01788 at 1879.402 kb on + strand, within MPMX20_01788 at 1879.410 kb on - strand, within MPMX20_01788 at 1879.548 kb on - strand, within MPMX20_01788 at 1879.552 kb on + strand, within MPMX20_01788 at 1879.560 kb on - strand, within MPMX20_01788 at 1879.565 kb on - strand, within MPMX20_01788 at 1879.579 kb on + strand, within MPMX20_01788 at 1879.749 kb on - strand, within MPMX20_01788 at 1880.084 kb on - strand, within MPMX20_01788 at 1880.160 kb on + strand at 1880.168 kb on - strand at 1880.199 kb on - strand at 1880.203 kb on + strand at 1880.211 kb on - strand at 1880.275 kb on - strand at 1880.285 kb on - strand at 1880.380 kb on + strand, within MPMX20_01789 at 1880.431 kb on + strand, within MPMX20_01789 at 1880.439 kb on - strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.444 kb on + strand, within MPMX20_01789 at 1880.455 kb on + strand, within MPMX20_01789 at 1880.458 kb on - strand, within MPMX20_01789 at 1880.460 kb on + strand, within MPMX20_01789 at 1880.463 kb on - strand, within MPMX20_01789 at 1880.508 kb on + strand, within MPMX20_01789 at 1880.533 kb on - strand, within MPMX20_01789 at 1880.553 kb on + strand, within MPMX20_01789 at 1880.645 kb on + strand, within MPMX20_01789 at 1880.659 kb on - strand, within MPMX20_01789 at 1880.784 kb on + strand at 1880.792 kb on + strand at 1881.082 kb on + strand at 1881.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,878,194 + MPMX20_01786 0.73 +0.2 1,878,194 + MPMX20_01786 0.73 +1.1 1,878,197 - MPMX20_01786 0.74 +0.7 1,878,252 + MPMX20_01786 0.82 +0.6 1,878,312 + +0.2 1,878,355 + -0.1 1,878,427 + +1.6 1,878,488 - MPMX20_01787 0.17 -0.2 1,878,488 - MPMX20_01787 0.17 +0.3 1,878,506 + MPMX20_01787 0.19 +0.3 1,878,506 + MPMX20_01787 0.19 -0.3 1,878,506 + MPMX20_01787 0.19 -2.0 1,878,608 + MPMX20_01787 0.32 +0.3 1,878,616 + MPMX20_01787 0.33 -0.3 1,878,616 - MPMX20_01787 0.33 -1.6 1,878,616 - MPMX20_01787 0.33 +0.5 1,878,661 + MPMX20_01787 0.38 -0.6 1,878,681 - MPMX20_01787 0.40 +2.1 1,878,698 + MPMX20_01787 0.43 +0.5 1,878,719 - MPMX20_01787 0.45 -3.4 1,878,765 + MPMX20_01787 0.51 -0.6 1,878,765 + MPMX20_01787 0.51 -2.0 1,878,780 + MPMX20_01787 0.52 -0.9 1,878,780 + MPMX20_01787 0.52 +5.1 1,878,827 + MPMX20_01787 0.58 -2.2 1,878,844 + MPMX20_01787 0.60 +0.5 1,878,852 - MPMX20_01787 0.61 +0.8 1,878,896 - MPMX20_01787 0.67 +0.5 1,878,932 + MPMX20_01787 0.71 +0.8 1,878,961 + MPMX20_01787 0.74 -2.3 1,879,140 - -0.2 1,879,174 - +1.7 1,879,174 - -0.9 1,879,176 + -0.9 1,879,180 + +0.1 1,879,211 + -0.5 1,879,219 - -0.9 1,879,231 - +0.1 1,879,233 + -0.1 1,879,320 - MPMX20_01788 0.13 +0.2 1,879,326 + MPMX20_01788 0.14 -0.7 1,879,391 - MPMX20_01788 0.20 -1.9 1,879,402 + MPMX20_01788 0.21 -1.3 1,879,410 - MPMX20_01788 0.22 -0.5 1,879,548 - MPMX20_01788 0.36 +0.5 1,879,552 + MPMX20_01788 0.36 -1.0 1,879,560 - MPMX20_01788 0.37 -2.4 1,879,565 - MPMX20_01788 0.37 +0.5 1,879,579 + MPMX20_01788 0.39 -0.5 1,879,749 - MPMX20_01788 0.55 -1.7 1,880,084 - MPMX20_01788 0.88 -1.9 1,880,160 + -0.4 1,880,168 - +1.1 1,880,199 - -0.5 1,880,203 + -0.9 1,880,211 - +0.5 1,880,275 - -1.7 1,880,285 - -1.3 1,880,380 + MPMX20_01789 0.25 -0.7 1,880,431 + MPMX20_01789 0.35 +1.7 1,880,439 - MPMX20_01789 0.36 -0.2 1,880,444 + MPMX20_01789 0.37 -1.6 1,880,444 + MPMX20_01789 0.37 +0.5 1,880,444 + MPMX20_01789 0.37 -1.1 1,880,444 + MPMX20_01789 0.37 -2.8 1,880,455 + MPMX20_01789 0.39 -0.7 1,880,458 - MPMX20_01789 0.40 +0.5 1,880,460 + MPMX20_01789 0.40 -0.5 1,880,463 - MPMX20_01789 0.41 -0.0 1,880,508 + MPMX20_01789 0.49 +0.1 1,880,533 - MPMX20_01789 0.53 -2.9 1,880,553 + MPMX20_01789 0.57 -0.0 1,880,645 + MPMX20_01789 0.74 -1.0 1,880,659 - MPMX20_01789 0.77 -0.8 1,880,784 + -1.4 1,880,792 + +1.2 1,881,082 + -0.5 1,881,090 - -0.1
Or see this region's nucleotide sequence