Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01788

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01786 and MPMX20_01787 overlap by 20 nucleotidesMPMX20_01787 and MPMX20_01788 are separated by 11 nucleotidesMPMX20_01788 and MPMX20_01789 are separated by 34 nucleotidesMPMX20_01789 and MPMX20_01790 are separated by 238 nucleotides MPMX20_01786: MPMX20_01786 - Penicillin-binding protein activator LpoB, at 1,877,719 to 1,878,366 _01786 MPMX20_01787: MPMX20_01787 - Thiamine kinase, at 1,878,347 to 1,879,171 _01787 MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208 _01788 MPMX20_01789: MPMX20_01789 - hypothetical protein, at 1,880,243 to 1,880,785 _01789 MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328 _01790 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1878.194 kb on + strand, within MPMX20_01786at 1878.194 kb on + strand, within MPMX20_01786at 1878.197 kb on - strand, within MPMX20_01786at 1878.252 kb on + strand, within MPMX20_01786at 1878.312 kb on + strandat 1878.355 kb on + strandat 1878.427 kb on + strandat 1878.488 kb on - strand, within MPMX20_01787at 1878.488 kb on - strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.608 kb on + strand, within MPMX20_01787at 1878.616 kb on + strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.661 kb on + strand, within MPMX20_01787at 1878.681 kb on - strand, within MPMX20_01787at 1878.698 kb on + strand, within MPMX20_01787at 1878.719 kb on - strand, within MPMX20_01787at 1878.765 kb on + strand, within MPMX20_01787at 1878.765 kb on + strand, within MPMX20_01787at 1878.780 kb on + strand, within MPMX20_01787at 1878.780 kb on + strand, within MPMX20_01787at 1878.827 kb on + strand, within MPMX20_01787at 1878.844 kb on + strand, within MPMX20_01787at 1878.852 kb on - strand, within MPMX20_01787at 1878.896 kb on - strand, within MPMX20_01787at 1878.932 kb on + strand, within MPMX20_01787at 1878.961 kb on + strand, within MPMX20_01787at 1879.140 kb on - strandat 1879.174 kb on - strandat 1879.174 kb on - strandat 1879.176 kb on + strandat 1879.180 kb on + strandat 1879.211 kb on + strandat 1879.219 kb on - strandat 1879.231 kb on - strandat 1879.233 kb on + strandat 1879.320 kb on - strand, within MPMX20_01788at 1879.326 kb on + strand, within MPMX20_01788at 1879.391 kb on - strand, within MPMX20_01788at 1879.402 kb on + strand, within MPMX20_01788at 1879.410 kb on - strand, within MPMX20_01788at 1879.548 kb on - strand, within MPMX20_01788at 1879.552 kb on + strand, within MPMX20_01788at 1879.560 kb on - strand, within MPMX20_01788at 1879.565 kb on - strand, within MPMX20_01788at 1879.579 kb on + strand, within MPMX20_01788at 1879.749 kb on - strand, within MPMX20_01788at 1880.084 kb on - strand, within MPMX20_01788at 1880.160 kb on + strandat 1880.168 kb on - strandat 1880.199 kb on - strandat 1880.203 kb on + strandat 1880.211 kb on - strandat 1880.275 kb on - strandat 1880.285 kb on - strandat 1880.380 kb on + strand, within MPMX20_01789at 1880.431 kb on + strand, within MPMX20_01789at 1880.439 kb on - strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.455 kb on + strand, within MPMX20_01789at 1880.458 kb on - strand, within MPMX20_01789at 1880.460 kb on + strand, within MPMX20_01789at 1880.463 kb on - strand, within MPMX20_01789at 1880.508 kb on + strand, within MPMX20_01789at 1880.533 kb on - strand, within MPMX20_01789at 1880.553 kb on + strand, within MPMX20_01789at 1880.645 kb on + strand, within MPMX20_01789at 1880.659 kb on - strand, within MPMX20_01789at 1880.784 kb on + strandat 1880.792 kb on + strandat 1881.082 kb on + strandat 1881.090 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,878,194 + MPMX20_01786 0.73 +0.2
1,878,194 + MPMX20_01786 0.73 +1.1
1,878,197 - MPMX20_01786 0.74 +0.7
1,878,252 + MPMX20_01786 0.82 +0.6
1,878,312 + +0.2
1,878,355 + -0.1
1,878,427 + +1.6
1,878,488 - MPMX20_01787 0.17 -0.2
1,878,488 - MPMX20_01787 0.17 +0.3
1,878,506 + MPMX20_01787 0.19 +0.3
1,878,506 + MPMX20_01787 0.19 -0.3
1,878,506 + MPMX20_01787 0.19 -2.0
1,878,608 + MPMX20_01787 0.32 +0.3
1,878,616 + MPMX20_01787 0.33 -0.3
1,878,616 - MPMX20_01787 0.33 -1.6
1,878,616 - MPMX20_01787 0.33 +0.5
1,878,661 + MPMX20_01787 0.38 -0.6
1,878,681 - MPMX20_01787 0.40 +2.1
1,878,698 + MPMX20_01787 0.43 +0.5
1,878,719 - MPMX20_01787 0.45 -3.4
1,878,765 + MPMX20_01787 0.51 -0.6
1,878,765 + MPMX20_01787 0.51 -2.0
1,878,780 + MPMX20_01787 0.52 -0.9
1,878,780 + MPMX20_01787 0.52 +5.1
1,878,827 + MPMX20_01787 0.58 -2.2
1,878,844 + MPMX20_01787 0.60 +0.5
1,878,852 - MPMX20_01787 0.61 +0.8
1,878,896 - MPMX20_01787 0.67 +0.5
1,878,932 + MPMX20_01787 0.71 +0.8
1,878,961 + MPMX20_01787 0.74 -2.3
1,879,140 - -0.2
1,879,174 - +1.7
1,879,174 - -0.9
1,879,176 + -0.9
1,879,180 + +0.1
1,879,211 + -0.5
1,879,219 - -0.9
1,879,231 - +0.1
1,879,233 + -0.1
1,879,320 - MPMX20_01788 0.13 +0.2
1,879,326 + MPMX20_01788 0.14 -0.7
1,879,391 - MPMX20_01788 0.20 -1.9
1,879,402 + MPMX20_01788 0.21 -1.3
1,879,410 - MPMX20_01788 0.22 -0.5
1,879,548 - MPMX20_01788 0.36 +0.5
1,879,552 + MPMX20_01788 0.36 -1.0
1,879,560 - MPMX20_01788 0.37 -2.4
1,879,565 - MPMX20_01788 0.37 +0.5
1,879,579 + MPMX20_01788 0.39 -0.5
1,879,749 - MPMX20_01788 0.55 -1.7
1,880,084 - MPMX20_01788 0.88 -1.9
1,880,160 + -0.4
1,880,168 - +1.1
1,880,199 - -0.5
1,880,203 + -0.9
1,880,211 - +0.5
1,880,275 - -1.7
1,880,285 - -1.3
1,880,380 + MPMX20_01789 0.25 -0.7
1,880,431 + MPMX20_01789 0.35 +1.7
1,880,439 - MPMX20_01789 0.36 -0.2
1,880,444 + MPMX20_01789 0.37 -1.6
1,880,444 + MPMX20_01789 0.37 +0.5
1,880,444 + MPMX20_01789 0.37 -1.1
1,880,444 + MPMX20_01789 0.37 -2.8
1,880,455 + MPMX20_01789 0.39 -0.7
1,880,458 - MPMX20_01789 0.40 +0.5
1,880,460 + MPMX20_01789 0.40 -0.5
1,880,463 - MPMX20_01789 0.41 -0.0
1,880,508 + MPMX20_01789 0.49 +0.1
1,880,533 - MPMX20_01789 0.53 -2.9
1,880,553 + MPMX20_01789 0.57 -0.0
1,880,645 + MPMX20_01789 0.74 -1.0
1,880,659 - MPMX20_01789 0.77 -0.8
1,880,784 + -1.4
1,880,792 + +1.2
1,881,082 + -0.5
1,881,090 - -0.1

Or see this region's nucleotide sequence