Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4820

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4819 and Ac3H11_4820 are separated by 23 nucleotidesAc3H11_4820 and Ac3H11_4821 are separated by 153 nucleotides Ac3H11_4819 - FOG: TPR repeat, at 122,250 to 123,596 _4819 Ac3H11_4820 - FIG00349859: hypothetical protein, at 123,620 to 124,228 _4820 Ac3H11_4821 - putative amidase, at 124,382 to 125,785 _4821 Position (kb) 123 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 122.621 kb on + strand, within Ac3H11_4819at 122.645 kb on - strand, within Ac3H11_4819at 122.645 kb on - strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strandat 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.650 kb on + strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.651 kb on - strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.730 kb on + strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.731 kb on - strand, within Ac3H11_4819at 122.795 kb on - strand, within Ac3H11_4819at 122.795 kb on - strand, within Ac3H11_4819at 122.795 kb on - strand, within Ac3H11_4819at 122.795 kb on - strand, within Ac3H11_4819at 122.795 kb on - strand, within Ac3H11_4819at 122.827 kb on + strand, within Ac3H11_4819at 122.827 kb on + strand, within Ac3H11_4819at 122.827 kb on + strand, within Ac3H11_4819at 122.828 kb on - strand, within Ac3H11_4819at 123.112 kb on + strand, within Ac3H11_4819at 123.112 kb on + strand, within Ac3H11_4819at 123.112 kb on + strand, within Ac3H11_4819at 123.194 kb on - strand, within Ac3H11_4819at 123.194 kb on - strand, within Ac3H11_4819at 123.194 kb on - strand, within Ac3H11_4819at 123.194 kb on - strand, within Ac3H11_4819at 123.194 kb on - strand, within Ac3H11_4819at 123.645 kb on + strandat 123.645 kb on + strandat 123.645 kb on + strandat 123.645 kb on + strandat 123.645 kb on + strandat 123.645 kb on + strandat 123.646 kb on - strandat 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.795 kb on + strand, within Ac3H11_4820at 123.796 kb on - strand, within Ac3H11_4820at 123.796 kb on - strand, within Ac3H11_4820at 123.796 kb on - strand, within Ac3H11_4820at 123.796 kb on - strand, within Ac3H11_4820at 123.796 kb on - strand, within Ac3H11_4820at 124.083 kb on + strand, within Ac3H11_4820at 124.083 kb on + strand, within Ac3H11_4820at 124.083 kb on + strand, within Ac3H11_4820at 124.083 kb on + strand, within Ac3H11_4820at 124.084 kb on - strand, within Ac3H11_4820at 124.084 kb on - strand, within Ac3H11_4820at 124.122 kb on + strand, within Ac3H11_4820at 124.122 kb on + strand, within Ac3H11_4820at 124.122 kb on + strand, within Ac3H11_4820at 124.122 kb on + strand, within Ac3H11_4820at 124.122 kb on + strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.123 kb on - strand, within Ac3H11_4820at 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.185 kb on + strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.186 kb on - strandat 124.286 kb on + strandat 124.326 kb on + strandat 124.326 kb on + strandat 124.375 kb on + strandat 124.375 kb on + strandat 124.375 kb on + strandat 124.518 kb on + strandat 124.519 kb on - strandat 124.519 kb on - strandat 124.519 kb on - strandat 124.665 kb on + strand, within Ac3H11_4821at 124.665 kb on + strand, within Ac3H11_4821at 124.665 kb on + strand, within Ac3H11_4821at 124.665 kb on + strand, within Ac3H11_4821at 124.665 kb on + strand, within Ac3H11_4821at 124.666 kb on - strand, within Ac3H11_4821at 124.666 kb on - strand, within Ac3H11_4821at 124.666 kb on - strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.782 kb on + strand, within Ac3H11_4821at 124.783 kb on - strand, within Ac3H11_4821at 124.783 kb on - strand, within Ac3H11_4821at 124.783 kb on - strand, within Ac3H11_4821at 124.783 kb on - strand, within Ac3H11_4821at 124.783 kb on - strand, within Ac3H11_4821at 125.172 kb on + strand, within Ac3H11_4821at 125.172 kb on + strand, within Ac3H11_4821at 125.173 kb on - strand, within Ac3H11_4821at 125.173 kb on - strand, within Ac3H11_4821

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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122,621 + Ac3H11_4819 0.28 -1.1
122,645 - Ac3H11_4819 0.29 +0.6
122,645 - Ac3H11_4819 0.29 -1.8
122,650 + Ac3H11_4819 0.30 +0.2
122,650 + Ac3H11_4819 0.30 +0.2
122,650 + Ac3H11_4819 0.30 +1.4
122,650 + Ac3H11_4819 0.30 -0.8
122,650 + Ac3H11_4819 0.30 +1.0
122,650 + -1.0
122,650 + Ac3H11_4819 0.30 +0.1
122,650 + Ac3H11_4819 0.30 +0.2
122,650 + Ac3H11_4819 0.30 +1.2
122,650 + Ac3H11_4819 0.30 -2.1
122,650 + Ac3H11_4819 0.30 +0.5
122,650 + Ac3H11_4819 0.30 -1.3
122,650 + Ac3H11_4819 0.30 +1.2
122,651 - Ac3H11_4819 0.30 +0.9
122,651 - Ac3H11_4819 0.30 +1.0
122,651 - Ac3H11_4819 0.30 -0.3
122,651 - Ac3H11_4819 0.30 +0.1
122,651 - Ac3H11_4819 0.30 +0.7
122,651 - Ac3H11_4819 0.30 -0.3
122,651 - Ac3H11_4819 0.30 +0.3
122,651 - Ac3H11_4819 0.30 +0.5
122,651 - Ac3H11_4819 0.30 +1.3
122,651 - Ac3H11_4819 0.30 +0.2
122,730 + Ac3H11_4819 0.36 +0.0
122,730 + Ac3H11_4819 0.36 -2.0
122,730 + Ac3H11_4819 0.36 +0.7
122,730 + Ac3H11_4819 0.36 +0.1
122,730 + Ac3H11_4819 0.36 -0.7
122,730 + Ac3H11_4819 0.36 +1.3
122,731 - Ac3H11_4819 0.36 +1.3
122,731 - Ac3H11_4819 0.36 +0.4
122,731 - Ac3H11_4819 0.36 -0.2
122,731 - Ac3H11_4819 0.36 -2.8
122,731 - Ac3H11_4819 0.36 -1.2
122,731 - Ac3H11_4819 0.36 -0.1
122,731 - Ac3H11_4819 0.36 -0.8
122,731 - Ac3H11_4819 0.36 +0.6
122,795 - Ac3H11_4819 0.40 +0.0
122,795 - Ac3H11_4819 0.40 +0.6
122,795 - Ac3H11_4819 0.40 +0.2
122,795 - Ac3H11_4819 0.40 +1.2
122,795 - Ac3H11_4819 0.40 -0.4
122,827 + Ac3H11_4819 0.43 +1.2
122,827 + Ac3H11_4819 0.43 +0.3
122,827 + Ac3H11_4819 0.43 +0.6
122,828 - Ac3H11_4819 0.43 -0.1
123,112 + Ac3H11_4819 0.64 -0.4
123,112 + Ac3H11_4819 0.64 +1.2
123,112 + Ac3H11_4819 0.64 +1.2
123,194 - Ac3H11_4819 0.70 +0.8
123,194 - Ac3H11_4819 0.70 -0.5
123,194 - Ac3H11_4819 0.70 -3.2
123,194 - Ac3H11_4819 0.70 -2.4
123,194 - Ac3H11_4819 0.70 +0.1
123,645 + +0.3
123,645 + -0.4
123,645 + +1.8
123,645 + -0.9
123,645 + +0.5
123,645 + -1.2
123,646 - +1.2
123,795 + Ac3H11_4820 0.29 -0.2
123,795 + Ac3H11_4820 0.29 +0.2
123,795 + Ac3H11_4820 0.29 +0.4
123,795 + Ac3H11_4820 0.29 -0.3
123,795 + Ac3H11_4820 0.29 +2.2
123,795 + Ac3H11_4820 0.29 +1.2
123,795 + Ac3H11_4820 0.29 -0.6
123,795 + Ac3H11_4820 0.29 -0.7
123,795 + Ac3H11_4820 0.29 -0.2
123,795 + Ac3H11_4820 0.29 -0.8
123,795 + Ac3H11_4820 0.29 -0.5
123,796 - Ac3H11_4820 0.29 -1.4
123,796 - Ac3H11_4820 0.29 -0.5
123,796 - Ac3H11_4820 0.29 -0.4
123,796 - Ac3H11_4820 0.29 -1.1
123,796 - Ac3H11_4820 0.29 +1.1
124,083 + Ac3H11_4820 0.76 +1.4
124,083 + Ac3H11_4820 0.76 +0.6
124,083 + Ac3H11_4820 0.76 -1.5
124,083 + Ac3H11_4820 0.76 +0.2
124,084 - Ac3H11_4820 0.76 +0.4
124,084 - Ac3H11_4820 0.76 -0.0
124,122 + Ac3H11_4820 0.82 +0.9
124,122 + Ac3H11_4820 0.82 +1.6
124,122 + Ac3H11_4820 0.82 -3.1
124,122 + Ac3H11_4820 0.82 +0.1
124,122 + Ac3H11_4820 0.82 +0.8
124,123 - Ac3H11_4820 0.83 +0.8
124,123 - Ac3H11_4820 0.83 -0.2
124,123 - Ac3H11_4820 0.83 -0.6
124,123 - Ac3H11_4820 0.83 +0.8
124,123 - Ac3H11_4820 0.83 +0.5
124,123 - Ac3H11_4820 0.83 +0.9
124,123 - Ac3H11_4820 0.83 +0.7
124,123 - Ac3H11_4820 0.83 -1.2
124,185 + -0.6
124,185 + -0.4
124,185 + -1.3
124,185 + +0.4
124,185 + +2.2
124,185 + +1.1
124,185 + -0.2
124,185 + +0.1
124,185 + +1.3
124,185 + -0.4
124,185 + +0.8
124,185 + -0.2
124,185 + +1.2
124,185 + -2.1
124,185 + +1.1
124,185 + -0.3
124,185 + -0.0
124,185 + +2.9
124,185 + -0.7
124,186 - +0.7
124,186 - +0.3
124,186 - -1.2
124,186 - +0.8
124,186 - -0.1
124,186 - -0.9
124,186 - +0.3
124,186 - -0.2
124,186 - +0.3
124,186 - -1.0
124,186 - -0.2
124,286 + -0.6
124,326 + +1.2
124,326 + +0.2
124,375 + +1.2
124,375 + +1.0
124,375 + -0.4
124,518 + +0.8
124,519 - +0.1
124,519 - -1.9
124,519 - +2.4
124,665 + Ac3H11_4821 0.20 +0.6
124,665 + Ac3H11_4821 0.20 -1.0
124,665 + Ac3H11_4821 0.20 +0.7
124,665 + Ac3H11_4821 0.20 +0.7
124,665 + Ac3H11_4821 0.20 +0.1
124,666 - Ac3H11_4821 0.20 +0.1
124,666 - Ac3H11_4821 0.20 +0.2
124,666 - Ac3H11_4821 0.20 -1.2
124,782 + Ac3H11_4821 0.28 +0.9
124,782 + Ac3H11_4821 0.28 -0.8
124,782 + Ac3H11_4821 0.28 -1.2
124,782 + Ac3H11_4821 0.28 -1.2
124,782 + Ac3H11_4821 0.28 -1.0
124,782 + Ac3H11_4821 0.28 +0.9
124,782 + Ac3H11_4821 0.28 +0.9
124,783 - Ac3H11_4821 0.29 +1.5
124,783 - Ac3H11_4821 0.29 -1.0
124,783 - Ac3H11_4821 0.29 +0.3
124,783 - Ac3H11_4821 0.29 -0.4
124,783 - Ac3H11_4821 0.29 +2.2
125,172 + Ac3H11_4821 0.56 -0.9
125,172 + Ac3H11_4821 0.56 -0.8
125,173 - Ac3H11_4821 0.56 +0.5
125,173 - Ac3H11_4821 0.56 +0.6

Or see this region's nucleotide sequence