Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4816

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4815 and Ac3H11_4816 overlap by 4 nucleotidesAc3H11_4816 and Ac3H11_4817 are separated by 208 nucleotidesAc3H11_4817 and Ac3H11_4818 are separated by 251 nucleotides Ac3H11_4815 - Integral membrane protein, at 118,150 to 119,031 _4815 Ac3H11_4816 - FIG00932538: hypothetical protein, at 119,028 to 119,906 _4816 Ac3H11_4817 - hypothetical protein, at 120,115 to 120,297 _4817 Ac3H11_4818 - Phosphoglycerate mutase (EC 5.4.2.1), at 120,549 to 121,241 _4818 Position (kb) 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 118.039 kb on - strandat 118.039 kb on - strandat 118.072 kb on + strandat 118.072 kb on + strandat 118.072 kb on + strandat 118.072 kb on + strandat 118.073 kb on - strandat 118.073 kb on - strandat 118.073 kb on - strandat 118.073 kb on - strandat 118.073 kb on - strandat 118.073 kb on - strandat 118.297 kb on + strand, within Ac3H11_4815at 118.297 kb on + strand, within Ac3H11_4815at 118.298 kb on - strand, within Ac3H11_4815at 118.298 kb on - strand, within Ac3H11_4815at 118.298 kb on - strand, within Ac3H11_4815at 118.378 kb on + strand, within Ac3H11_4815at 118.378 kb on + strand, within Ac3H11_4815at 118.378 kb on + strand, within Ac3H11_4815at 118.378 kb on + strand, within Ac3H11_4815at 118.378 kb on + strand, within Ac3H11_4815at 118.379 kb on - strand, within Ac3H11_4815at 118.379 kb on - strand, within Ac3H11_4815at 118.430 kb on - strand, within Ac3H11_4815at 118.430 kb on - strand, within Ac3H11_4815at 118.627 kb on + strand, within Ac3H11_4815at 118.627 kb on + strand, within Ac3H11_4815at 118.660 kb on + strand, within Ac3H11_4815at 118.660 kb on + strand, within Ac3H11_4815at 118.660 kb on + strand, within Ac3H11_4815at 118.660 kb on + strand, within Ac3H11_4815at 118.660 kb on + strand, within Ac3H11_4815at 118.661 kb on - strand, within Ac3H11_4815at 118.661 kb on - strand, within Ac3H11_4815at 118.661 kb on - strand, within Ac3H11_4815at 118.678 kb on + strand, within Ac3H11_4815at 118.678 kb on + strand, within Ac3H11_4815at 118.679 kb on - strand, within Ac3H11_4815at 118.679 kb on - strand, within Ac3H11_4815at 118.679 kb on - strand, within Ac3H11_4815at 118.679 kb on - strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.720 kb on + strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.721 kb on - strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.849 kb on + strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.850 kb on - strand, within Ac3H11_4815at 118.864 kb on + strand, within Ac3H11_4815at 118.864 kb on + strand, within Ac3H11_4815at 118.864 kb on + strand, within Ac3H11_4815at 118.865 kb on - strand, within Ac3H11_4815at 118.865 kb on - strand, within Ac3H11_4815at 118.865 kb on - strand, within Ac3H11_4815at 118.865 kb on - strand, within Ac3H11_4815at 118.996 kb on - strandat 118.996 kb on - strandat 118.996 kb on - strandat 118.996 kb on - strandat 118.996 kb on - strandat 118.996 kb on - strandat 119.056 kb on + strandat 119.056 kb on + strandat 119.056 kb on + strandat 119.057 kb on - strandat 119.057 kb on - strandat 119.099 kb on + strandat 119.099 kb on + strandat 119.099 kb on + strandat 119.099 kb on + strandat 119.099 kb on + strandat 119.100 kb on - strandat 119.100 kb on - strandat 119.100 kb on - strandat 119.100 kb on - strandat 119.544 kb on + strand, within Ac3H11_4816at 119.814 kb on + strand, within Ac3H11_4816at 119.814 kb on + strand, within Ac3H11_4816at 119.814 kb on + strand, within Ac3H11_4816at 119.815 kb on - strand, within Ac3H11_4816at 119.815 kb on - strand, within Ac3H11_4816at 119.873 kb on + strandat 119.873 kb on + strandat 119.873 kb on + strandat 119.874 kb on - strandat 120.041 kb on + strandat 120.041 kb on + strandat 120.041 kb on + strandat 120.041 kb on + strandat 120.041 kb on + strandat 120.042 kb on - strandat 120.042 kb on - strandat 120.042 kb on - strandat 120.042 kb on - strandat 120.042 kb on - strandat 120.157 kb on + strand, within Ac3H11_4817at 120.158 kb on - strand, within Ac3H11_4817at 120.158 kb on - strand, within Ac3H11_4817at 120.158 kb on - strand, within Ac3H11_4817at 120.158 kb on - strand, within Ac3H11_4817at 120.158 kb on - strand, within Ac3H11_4817at 120.161 kb on - strand, within Ac3H11_4817at 120.161 kb on - strand, within Ac3H11_4817at 120.161 kb on - strand, within Ac3H11_4817at 120.295 kb on + strandat 120.295 kb on + strandat 120.296 kb on - strandat 120.384 kb on + strandat 120.384 kb on + strandat 120.384 kb on + strandat 120.384 kb on + strandat 120.384 kb on + strandat 120.390 kb on + strandat 120.390 kb on + strandat 120.390 kb on + strandat 120.467 kb on + strandat 120.467 kb on + strandat 120.467 kb on + strandat 120.468 kb on - strandat 120.468 kb on - strandat 120.468 kb on - strandat 120.482 kb on + strandat 120.495 kb on + strandat 120.495 kb on + strandat 120.496 kb on - strandat 120.496 kb on - strandat 120.496 kb on - strandat 120.562 kb on + strandat 120.562 kb on + strandat 120.562 kb on + strandat 120.562 kb on + strandat 120.562 kb on + strandat 120.562 kb on + strandat 120.563 kb on - strandat 120.563 kb on - strandat 120.646 kb on + strand, within Ac3H11_4818at 120.646 kb on + strand, within Ac3H11_4818at 120.647 kb on - strand, within Ac3H11_4818at 120.647 kb on - strand, within Ac3H11_4818at 120.647 kb on - strand, within Ac3H11_4818at 120.647 kb on - strand, within Ac3H11_4818

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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118,039 - +0.6
118,039 - +0.4
118,072 + -1.0
118,072 + +0.3
118,072 + +0.8
118,072 + +0.9
118,073 - -0.1
118,073 - -0.4
118,073 - -1.0
118,073 - -0.4
118,073 - +0.8
118,073 - +1.9
118,297 + Ac3H11_4815 0.17 -2.0
118,297 + Ac3H11_4815 0.17 -0.0
118,298 - Ac3H11_4815 0.17 -0.2
118,298 - Ac3H11_4815 0.17 -0.0
118,298 - Ac3H11_4815 0.17 +1.0
118,378 + Ac3H11_4815 0.26 -1.4
118,378 + Ac3H11_4815 0.26 +1.6
118,378 + Ac3H11_4815 0.26 +0.4
118,378 + Ac3H11_4815 0.26 +0.8
118,378 + Ac3H11_4815 0.26 +1.4
118,379 - Ac3H11_4815 0.26 +2.4
118,379 - Ac3H11_4815 0.26 +0.3
118,430 - Ac3H11_4815 0.32 +0.0
118,430 - Ac3H11_4815 0.32 +0.3
118,627 + Ac3H11_4815 0.54 +0.2
118,627 + Ac3H11_4815 0.54 -0.9
118,660 + Ac3H11_4815 0.58 -1.3
118,660 + Ac3H11_4815 0.58 -1.0
118,660 + Ac3H11_4815 0.58 -0.4
118,660 + Ac3H11_4815 0.58 +1.4
118,660 + Ac3H11_4815 0.58 -0.6
118,661 - Ac3H11_4815 0.58 +1.4
118,661 - Ac3H11_4815 0.58 +0.2
118,661 - Ac3H11_4815 0.58 -0.7
118,678 + Ac3H11_4815 0.60 -0.0
118,678 + Ac3H11_4815 0.60 -1.8
118,679 - Ac3H11_4815 0.60 -0.6
118,679 - Ac3H11_4815 0.60 -2.7
118,679 - Ac3H11_4815 0.60 +1.2
118,679 - Ac3H11_4815 0.60 -2.3
118,720 + Ac3H11_4815 0.65 +0.2
118,720 + Ac3H11_4815 0.65 -0.8
118,720 + Ac3H11_4815 0.65 -1.5
118,720 + Ac3H11_4815 0.65 +0.4
118,720 + Ac3H11_4815 0.65 -0.8
118,720 + Ac3H11_4815 0.65 -0.0
118,720 + Ac3H11_4815 0.65 +1.7
118,720 + Ac3H11_4815 0.65 +1.3
118,720 + Ac3H11_4815 0.65 +1.6
118,720 + Ac3H11_4815 0.65 +0.1
118,721 - Ac3H11_4815 0.65 -0.7
118,721 - Ac3H11_4815 0.65 +0.8
118,721 - Ac3H11_4815 0.65 +0.2
118,721 - Ac3H11_4815 0.65 -0.7
118,721 - Ac3H11_4815 0.65 +2.0
118,721 - Ac3H11_4815 0.65 +0.7
118,721 - Ac3H11_4815 0.65 +0.6
118,721 - Ac3H11_4815 0.65 -0.0
118,849 + Ac3H11_4815 0.79 +1.4
118,849 + Ac3H11_4815 0.79 +0.0
118,849 + Ac3H11_4815 0.79 -1.5
118,849 + Ac3H11_4815 0.79 -0.0
118,849 + Ac3H11_4815 0.79 -1.6
118,849 + Ac3H11_4815 0.79 +0.5
118,849 + Ac3H11_4815 0.79 +0.7
118,849 + Ac3H11_4815 0.79 -0.2
118,850 - Ac3H11_4815 0.79 +0.2
118,850 - Ac3H11_4815 0.79 -0.4
118,850 - Ac3H11_4815 0.79 +0.3
118,850 - Ac3H11_4815 0.79 -0.9
118,850 - Ac3H11_4815 0.79 -1.2
118,850 - Ac3H11_4815 0.79 -0.8
118,850 - Ac3H11_4815 0.79 +0.5
118,864 + Ac3H11_4815 0.81 -1.5
118,864 + Ac3H11_4815 0.81 +0.0
118,864 + Ac3H11_4815 0.81 -0.0
118,865 - Ac3H11_4815 0.81 -1.3
118,865 - Ac3H11_4815 0.81 -1.5
118,865 - Ac3H11_4815 0.81 +0.6
118,865 - Ac3H11_4815 0.81 +0.0
118,996 - +0.9
118,996 - -0.0
118,996 - +2.2
118,996 - +0.1
118,996 - +1.5
118,996 - +1.2
119,056 + +0.0
119,056 + -1.3
119,056 + -0.7
119,057 - -0.4
119,057 - +1.4
119,099 + +1.6
119,099 + +1.2
119,099 + -0.9
119,099 + +0.2
119,099 + -0.6
119,100 - -0.1
119,100 - -0.0
119,100 - -0.2
119,100 - -0.2
119,544 + Ac3H11_4816 0.59 +1.0
119,814 + Ac3H11_4816 0.89 +0.7
119,814 + Ac3H11_4816 0.89 -2.0
119,814 + Ac3H11_4816 0.89 +0.6
119,815 - Ac3H11_4816 0.90 +0.7
119,815 - Ac3H11_4816 0.90 -0.5
119,873 + -1.2
119,873 + +0.7
119,873 + -1.8
119,874 - +0.1
120,041 + +2.0
120,041 + +0.6
120,041 + -0.0
120,041 + -0.5
120,041 + -0.7
120,042 - -0.0
120,042 - +0.5
120,042 - +0.5
120,042 - +1.1
120,042 - -0.4
120,157 + Ac3H11_4817 0.23 +0.6
120,158 - Ac3H11_4817 0.23 +0.3
120,158 - Ac3H11_4817 0.23 -0.1
120,158 - Ac3H11_4817 0.23 +0.3
120,158 - Ac3H11_4817 0.23 +0.2
120,158 - Ac3H11_4817 0.23 +1.8
120,161 - Ac3H11_4817 0.25 -0.2
120,161 - Ac3H11_4817 0.25 -0.8
120,161 - Ac3H11_4817 0.25 +0.3
120,295 + -1.9
120,295 + -0.7
120,296 - +0.2
120,384 + +0.6
120,384 + -0.8
120,384 + -1.1
120,384 + -1.8
120,384 + -0.7
120,390 + -0.5
120,390 + -1.0
120,390 + +1.0
120,467 + +1.2
120,467 + -0.4
120,467 + +1.2
120,468 - -0.1
120,468 - +0.2
120,468 - -2.2
120,482 + +0.1
120,495 + -2.1
120,495 + -0.9
120,496 - +0.2
120,496 - +0.6
120,496 - +0.0
120,562 + -0.3
120,562 + -0.7
120,562 + +0.7
120,562 + +0.7
120,562 + +0.2
120,562 + -0.5
120,563 - -0.4
120,563 - -0.0
120,646 + Ac3H11_4818 0.14 +0.9
120,646 + Ac3H11_4818 0.14 +0.2
120,647 - Ac3H11_4818 0.14 -0.3
120,647 - Ac3H11_4818 0.14 +0.7
120,647 - Ac3H11_4818 0.14 +0.7
120,647 - Ac3H11_4818 0.14 +0.6

Or see this region's nucleotide sequence