Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_435

Experiment: phage 93.2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_434 and Ac3H11_435 are separated by 281 nucleotidesAc3H11_435 and Ac3H11_436 overlap by 1 nucleotides Ac3H11_434 - hypothetical protein, at 119,450 to 120,211 _434 Ac3H11_435 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 120,493 to 121,710 _435 Ac3H11_436 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 121,710 to 124,955 _436 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.965 kb on - strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.180 kb on + strandat 120.180 kb on + strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.307 kb on + strandat 120.307 kb on + strandat 120.308 kb on - strandat 120.308 kb on - strandat 120.352 kb on + strandat 120.352 kb on + strandat 120.353 kb on - strandat 120.403 kb on - strandat 120.403 kb on - strandat 120.403 kb on - strandat 120.528 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
remove
119,851 - Ac3H11_434 0.53 +0.2
119,851 - Ac3H11_434 0.53 -0.1
119,851 - Ac3H11_434 0.53 +0.3
119,851 - Ac3H11_434 0.53 -0.6
119,937 + Ac3H11_434 0.64 -0.1
119,937 + Ac3H11_434 0.64 -0.1
119,937 + Ac3H11_434 0.64 -2.7
119,937 + Ac3H11_434 0.64 -1.2
119,937 + Ac3H11_434 0.64 -0.9
119,937 + Ac3H11_434 0.64 +0.8
119,937 + Ac3H11_434 0.64 +0.8
119,938 - Ac3H11_434 0.64 +0.4
119,938 - Ac3H11_434 0.64 +0.7
119,938 - Ac3H11_434 0.64 -0.7
119,938 - Ac3H11_434 0.64 +0.6
119,938 - Ac3H11_434 0.64 +0.4
119,938 - Ac3H11_434 0.64 +1.1
119,938 - Ac3H11_434 0.64 -0.4
119,946 + Ac3H11_434 0.65 -1.1
119,946 + Ac3H11_434 0.65 +0.7
119,946 + Ac3H11_434 0.65 +0.9
119,946 + Ac3H11_434 0.65 -0.4
119,946 + Ac3H11_434 0.65 +2.0
119,946 + Ac3H11_434 0.65 +0.1
119,947 - Ac3H11_434 0.65 +0.8
119,947 - Ac3H11_434 0.65 -0.0
119,947 - Ac3H11_434 0.65 -0.0
119,947 - Ac3H11_434 0.65 +0.9
119,947 - Ac3H11_434 0.65 +0.2
119,947 - Ac3H11_434 0.65 -1.3
119,947 - Ac3H11_434 0.65 +1.9
119,947 - Ac3H11_434 0.65 +0.5
119,947 - Ac3H11_434 0.65 +0.6
119,947 - Ac3H11_434 0.65 +0.8
119,965 - Ac3H11_434 0.68 +1.7
119,994 + Ac3H11_434 0.71 -0.7
119,994 + Ac3H11_434 0.71 +1.1
119,994 + Ac3H11_434 0.71 +0.5
119,995 - Ac3H11_434 0.72 -0.4
119,995 - Ac3H11_434 0.72 -2.0
120,021 + Ac3H11_434 0.75 +0.8
120,021 + Ac3H11_434 0.75 -0.6
120,021 + Ac3H11_434 0.75 -0.1
120,021 + Ac3H11_434 0.75 -0.9
120,021 + Ac3H11_434 0.75 -0.0
120,021 + Ac3H11_434 0.75 -0.2
120,021 + Ac3H11_434 0.75 -0.3
120,021 + Ac3H11_434 0.75 -0.1
120,022 - Ac3H11_434 0.75 -0.7
120,022 - Ac3H11_434 0.75 -2.8
120,022 - Ac3H11_434 0.75 -3.0
120,022 - Ac3H11_434 0.75 -0.0
120,022 - Ac3H11_434 0.75 -0.1
120,180 + -0.6
120,180 + +0.2
120,181 - -0.5
120,181 - -1.8
120,181 - +0.6
120,307 + +0.2
120,307 + -0.0
120,308 - -0.7
120,308 - -0.7
120,352 + +0.4
120,352 + -1.1
120,353 - +0.3
120,403 - -1.3
120,403 - +0.9
120,403 - +0.8
120,528 + -1.7

Or see this region's nucleotide sequence