Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4209 and Ac3H11_4210 are separated by 392 nucleotides Ac3H11_4210 and Ac3H11_4211 are separated by 435 nucleotides Ac3H11_4211 and Ac3H11_4212 are separated by 24 nucleotides
Ac3H11_4209 - Heavy metal sensor histidine kinase, at 478,516 to 479,532
_4209
Ac3H11_4210 - DNA-binding heavy metal response regulator, at 479,925 to 480,605
_4210
Ac3H11_4211 - hypothetical protein, at 481,041 to 481,307
_4211
Ac3H11_4212 - Copper tolerance protein, at 481,332 to 482,501
_4212
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209 at 479.355 kb on + strand, within Ac3H11_4209 at 479.355 kb on + strand, within Ac3H11_4209 at 479.355 kb on + strand, within Ac3H11_4209 at 479.356 kb on - strand, within Ac3H11_4209 at 479.356 kb on - strand, within Ac3H11_4209 at 479.356 kb on - strand, within Ac3H11_4209 at 479.356 kb on - strand, within Ac3H11_4209 at 479.426 kb on + strand, within Ac3H11_4209 at 479.426 kb on + strand, within Ac3H11_4209 at 479.426 kb on + strand, within Ac3H11_4209 at 479.426 kb on + strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.427 kb on - strand, within Ac3H11_4209 at 479.453 kb on + strand at 479.453 kb on + strand at 479.454 kb on - strand at 479.454 kb on - strand at 479.454 kb on - strand at 479.489 kb on - strand at 479.553 kb on - strand at 479.648 kb on + strand at 479.648 kb on + strand at 479.648 kb on + strand at 479.648 kb on + strand at 479.807 kb on - strand at 479.807 kb on - strand at 479.926 kb on + strand at 479.926 kb on + strand at 479.926 kb on + strand at 479.926 kb on + strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.927 kb on - strand at 479.950 kb on + strand at 479.950 kb on + strand at 479.951 kb on - strand at 479.951 kb on - strand at 479.951 kb on - strand at 479.990 kb on - strand at 480.070 kb on - strand, within Ac3H11_4210 at 480.070 kb on - strand, within Ac3H11_4210 at 480.313 kb on + strand, within Ac3H11_4210 at 480.313 kb on + strand, within Ac3H11_4210 at 480.313 kb on + strand, within Ac3H11_4210 at 480.313 kb on + strand, within Ac3H11_4210 at 480.313 kb on + strand, within Ac3H11_4210 at 480.314 kb on - strand, within Ac3H11_4210 at 480.562 kb on + strand at 480.598 kb on - strand at 480.628 kb on + strand at 480.629 kb on - strand at 480.670 kb on + strand at 480.670 kb on + strand at 480.670 kb on + strand at 480.671 kb on - strand at 480.671 kb on - strand at 480.682 kb on - strand at 480.682 kb on - strand at 480.682 kb on - strand at 480.682 kb on - strand at 480.693 kb on + strand at 480.693 kb on + strand at 480.728 kb on + strand at 480.728 kb on + strand at 480.729 kb on - strand at 480.729 kb on - strand at 480.729 kb on - strand at 480.753 kb on + strand at 480.753 kb on + strand at 480.753 kb on + strand at 480.824 kb on + strand at 480.868 kb on + strand at 480.869 kb on - strand at 480.881 kb on - strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.901 kb on + strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.902 kb on - strand at 480.910 kb on + strand at 480.911 kb on - strand at 480.983 kb on - strand at 481.303 kb on + strand at 481.303 kb on + strand at 481.304 kb on - strand at 481.493 kb on + strand, within Ac3H11_4212 at 481.555 kb on + strand, within Ac3H11_4212 at 481.555 kb on + strand, within Ac3H11_4212 at 481.555 kb on + strand, within Ac3H11_4212 at 481.555 kb on + strand, within Ac3H11_4212 at 481.556 kb on - strand, within Ac3H11_4212 at 481.576 kb on + strand, within Ac3H11_4212
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 478,949 + Ac3H11_4209 0.43 -0.0 478,949 + Ac3H11_4209 0.43 +0.7 478,949 + Ac3H11_4209 0.43 -0.3 478,949 + Ac3H11_4209 0.43 -1.7 478,949 + Ac3H11_4209 0.43 +0.7 478,949 + Ac3H11_4209 0.43 +0.8 478,950 - Ac3H11_4209 0.43 +1.8 478,950 - Ac3H11_4209 0.43 -1.5 478,950 - Ac3H11_4209 0.43 +1.3 478,950 - Ac3H11_4209 0.43 +1.3 478,950 - Ac3H11_4209 0.43 -0.5 479,072 + Ac3H11_4209 0.55 +0.8 479,072 + Ac3H11_4209 0.55 -1.4 479,115 + Ac3H11_4209 0.59 +0.9 479,115 + Ac3H11_4209 0.59 -0.6 479,355 + Ac3H11_4209 0.82 -1.4 479,355 + Ac3H11_4209 0.82 +0.7 479,355 + Ac3H11_4209 0.82 -1.0 479,356 - Ac3H11_4209 0.83 -0.2 479,356 - Ac3H11_4209 0.83 +0.4 479,356 - Ac3H11_4209 0.83 -0.5 479,356 - Ac3H11_4209 0.83 +1.3 479,426 + Ac3H11_4209 0.89 +0.8 479,426 + Ac3H11_4209 0.89 +0.7 479,426 + Ac3H11_4209 0.89 -0.3 479,426 + Ac3H11_4209 0.89 +1.3 479,427 - Ac3H11_4209 0.90 +1.3 479,427 - Ac3H11_4209 0.90 +2.2 479,427 - Ac3H11_4209 0.90 -1.5 479,427 - Ac3H11_4209 0.90 -0.1 479,427 - Ac3H11_4209 0.90 -1.0 479,427 - Ac3H11_4209 0.90 +0.3 479,427 - Ac3H11_4209 0.90 +0.1 479,427 - Ac3H11_4209 0.90 +0.6 479,453 + -0.3 479,453 + -0.6 479,454 - -2.3 479,454 - -0.3 479,454 - +0.9 479,489 - +0.6 479,553 - -0.7 479,648 + +0.4 479,648 + -1.7 479,648 + -1.7 479,648 + +0.3 479,807 - +0.6 479,807 - -0.5 479,926 + +0.3 479,926 + +0.0 479,926 + -0.5 479,926 + +1.2 479,927 - -0.4 479,927 - +0.7 479,927 - -0.1 479,927 - -0.9 479,927 - +6.1 479,927 - +0.3 479,927 - +2.1 479,927 - +0.0 479,927 - -0.4 479,950 + -1.2 479,950 + +0.6 479,951 - -0.9 479,951 - +0.7 479,951 - -0.0 479,990 - -0.9 480,070 - Ac3H11_4210 0.21 +0.0 480,070 - Ac3H11_4210 0.21 -0.7 480,313 + Ac3H11_4210 0.57 +0.7 480,313 + Ac3H11_4210 0.57 -0.7 480,313 + Ac3H11_4210 0.57 -0.7 480,313 + Ac3H11_4210 0.57 +1.3 480,313 + Ac3H11_4210 0.57 +0.3 480,314 - Ac3H11_4210 0.57 -0.1 480,562 + -0.7 480,598 - +0.2 480,628 + -2.9 480,629 - -0.9 480,670 + -2.1 480,670 + -0.3 480,670 + -0.2 480,671 - +0.9 480,671 - +0.6 480,682 - -0.8 480,682 - +0.8 480,682 - +0.6 480,682 - +3.3 480,693 + -1.4 480,693 + +0.8 480,728 + +0.5 480,728 + -0.9 480,729 - +0.3 480,729 - +0.5 480,729 - +0.3 480,753 + +1.0 480,753 + -1.9 480,753 + -0.9 480,824 + +0.7 480,868 + +0.4 480,869 - -0.1 480,881 - -0.5 480,901 + -0.1 480,901 + -0.4 480,901 + -1.7 480,901 + +0.2 480,901 + -0.5 480,901 + -0.4 480,901 + +0.4 480,901 + -1.5 480,901 + +0.3 480,901 + +0.3 480,901 + +1.1 480,901 + -1.0 480,901 + +0.1 480,901 + +0.6 480,901 + +1.1 480,902 - +0.6 480,902 - -0.2 480,902 - +0.2 480,902 - -0.7 480,902 - -0.7 480,902 - -1.2 480,902 - -1.7 480,910 + +1.1 480,911 - -0.3 480,983 - +0.3 481,303 + -1.0 481,303 + +0.8 481,304 - +1.6 481,493 + Ac3H11_4212 0.14 -0.5 481,555 + Ac3H11_4212 0.19 +0.2 481,555 + Ac3H11_4212 0.19 +0.5 481,555 + Ac3H11_4212 0.19 -2.1 481,555 + Ac3H11_4212 0.19 -0.3 481,556 - Ac3H11_4212 0.19 +1.3 481,576 + Ac3H11_4212 0.21 +0.9
Or see this region's nucleotide sequence