Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4204 and Ac3H11_4205 are separated by 365 nucleotides Ac3H11_4205 and Ac3H11_4206 are separated by 120 nucleotides Ac3H11_4206 and Ac3H11_4207 are separated by 114 nucleotides Ac3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides
Ac3H11_4204 - hypothetical protein, at 475,078 to 475,260
_4204
Ac3H11_4205 - hypothetical protein, at 475,626 to 475,883
_4205
Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624
_4206
Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858
_4207
Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243
_4208
Position (kb) 476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 475.081 kb on + strand at 475.081 kb on + strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.111 kb on + strand, within Ac3H11_4204 at 475.111 kb on + strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.308 kb on + strand at 475.309 kb on - strand at 475.316 kb on + strand at 475.316 kb on + strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.542 kb on + strand at 475.542 kb on + strand at 475.542 kb on + strand at 475.543 kb on - strand at 475.543 kb on - strand at 475.557 kb on - strand at 475.704 kb on + strand, within Ac3H11_4205 at 475.704 kb on + strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.766 kb on - strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.856 kb on + strand, within Ac3H11_4205 at 475.856 kb on + strand, within Ac3H11_4205 at 475.857 kb on - strand, within Ac3H11_4205 at 475.857 kb on - strand, within Ac3H11_4205 at 475.882 kb on - strand at 475.891 kb on + strand at 475.891 kb on + strand at 475.972 kb on + strand at 475.973 kb on - strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.033 kb on - strand at 476.137 kb on + strand, within Ac3H11_4206 at 476.138 kb on - strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.280 kb on + strand, within Ac3H11_4206 at 476.281 kb on - strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.306 kb on - strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.624 kb on + strand at 476.624 kb on + strand at 476.625 kb on - strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.685 kb on + strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.698 kb on + strand at 476.698 kb on + strand at 476.699 kb on - strand at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.768 kb on - strand, within Ac3H11_4207 at 476.861 kb on + strand at 476.861 kb on + strand at 476.861 kb on + strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.889 kb on - strand at 476.982 kb on + strand at 476.983 kb on - strand at 477.015 kb on + strand at 477.039 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.114 kb on + strand at 477.115 kb on - strand at 477.159 kb on + strand at 477.261 kb on + strand at 477.346 kb on - strand at 477.354 kb on + strand at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 475,081 + -1.2 475,081 + +1.1 475,082 - -0.7 475,082 - +0.5 475,111 + Ac3H11_4204 0.18 +0.6 475,111 + Ac3H11_4204 0.18 +0.7 475,112 - Ac3H11_4204 0.19 +0.7 475,112 - Ac3H11_4204 0.19 -1.9 475,112 - Ac3H11_4204 0.19 -0.3 475,112 - Ac3H11_4204 0.19 +0.8 475,308 + -0.7 475,309 - +1.9 475,316 + +0.7 475,316 + +0.8 475,317 - +1.5 475,317 - +0.5 475,317 - -0.9 475,317 - -1.2 475,542 + +1.1 475,542 + +0.9 475,542 + +1.0 475,543 - +0.4 475,543 - +1.1 475,557 - -0.2 475,704 + Ac3H11_4205 0.30 +1.0 475,704 + Ac3H11_4205 0.30 -1.4 475,705 - Ac3H11_4205 0.31 -0.6 475,705 - Ac3H11_4205 0.31 -0.3 475,705 - Ac3H11_4205 0.31 +0.3 475,705 - Ac3H11_4205 0.31 -0.1 475,766 - Ac3H11_4205 0.54 +0.5 475,852 + Ac3H11_4205 0.88 +0.8 475,852 + Ac3H11_4205 0.88 -0.7 475,852 + Ac3H11_4205 0.88 +1.0 475,852 + Ac3H11_4205 0.88 +1.4 475,852 + Ac3H11_4205 0.88 -0.6 475,853 - Ac3H11_4205 0.88 -0.0 475,853 - Ac3H11_4205 0.88 -0.5 475,853 - Ac3H11_4205 0.88 +0.4 475,853 - Ac3H11_4205 0.88 -0.0 475,853 - Ac3H11_4205 0.88 +0.5 475,853 - Ac3H11_4205 0.88 -0.2 475,853 - Ac3H11_4205 0.88 -0.1 475,853 - Ac3H11_4205 0.88 +1.8 475,853 - Ac3H11_4205 0.88 -0.1 475,853 - Ac3H11_4205 0.88 +0.1 475,853 - Ac3H11_4205 0.88 -0.4 475,856 + Ac3H11_4205 0.89 +0.7 475,856 + Ac3H11_4205 0.89 -0.9 475,857 - Ac3H11_4205 0.90 +1.9 475,857 - Ac3H11_4205 0.90 +0.8 475,882 - +1.3 475,891 + -1.5 475,891 + -0.4 475,972 + +0.5 475,973 - +0.6 476,032 + +2.0 476,032 + -0.1 476,032 + +0.1 476,032 + +1.1 476,032 + +0.1 476,032 + +1.8 476,032 + +1.0 476,032 + +0.4 476,033 - -1.3 476,137 + Ac3H11_4206 0.21 +0.8 476,138 - Ac3H11_4206 0.22 +0.2 476,242 + Ac3H11_4206 0.38 +0.1 476,242 + Ac3H11_4206 0.38 +0.9 476,242 + Ac3H11_4206 0.38 +0.9 476,242 + Ac3H11_4206 0.38 +0.2 476,243 - Ac3H11_4206 0.38 +4.0 476,243 - Ac3H11_4206 0.38 -0.5 476,243 - Ac3H11_4206 0.38 +1.1 476,243 - Ac3H11_4206 0.38 +0.3 476,280 + Ac3H11_4206 0.44 +0.3 476,281 - Ac3H11_4206 0.45 +0.5 476,298 + Ac3H11_4206 0.47 +0.5 476,298 + Ac3H11_4206 0.47 +0.5 476,298 + Ac3H11_4206 0.47 +0.5 476,299 - Ac3H11_4206 0.48 -0.7 476,299 - Ac3H11_4206 0.48 +1.4 476,299 - Ac3H11_4206 0.48 -0.2 476,299 - Ac3H11_4206 0.48 -2.3 476,299 - Ac3H11_4206 0.48 -0.2 476,299 - Ac3H11_4206 0.48 -2.6 476,305 + Ac3H11_4206 0.48 +1.1 476,305 + Ac3H11_4206 0.48 -1.5 476,305 + Ac3H11_4206 0.48 +0.6 476,306 - Ac3H11_4206 0.49 +1.4 476,412 + Ac3H11_4206 0.66 -0.0 476,412 + Ac3H11_4206 0.66 -0.1 476,412 + Ac3H11_4206 0.66 +2.2 476,413 - Ac3H11_4206 0.66 +1.6 476,413 - Ac3H11_4206 0.66 +0.5 476,593 + -0.9 476,593 + +0.3 476,593 + -0.1 476,593 + +0.6 476,624 + +1.6 476,624 + -0.6 476,625 - -0.9 476,643 + +0.3 476,643 + -0.2 476,643 + -0.4 476,643 + -0.3 476,643 + +0.9 476,644 - +1.9 476,644 - -0.2 476,644 - +0.9 476,644 - -0.1 476,685 + +0.6 476,686 - +1.3 476,686 - -0.6 476,686 - +0.2 476,698 + +0.7 476,698 + -0.9 476,699 - +0.6 476,757 + Ac3H11_4207 0.15 +0.6 476,757 + Ac3H11_4207 0.15 +0.9 476,757 + Ac3H11_4207 0.15 -0.3 476,757 + Ac3H11_4207 0.15 +0.2 476,758 - Ac3H11_4207 0.16 +1.7 476,758 - Ac3H11_4207 0.16 -1.2 476,758 - Ac3H11_4207 0.16 -0.1 476,767 + Ac3H11_4207 0.23 -0.8 476,767 + Ac3H11_4207 0.23 +0.5 476,767 + Ac3H11_4207 0.23 -0.2 476,768 - Ac3H11_4207 0.24 -0.1 476,861 + -0.2 476,861 + -1.5 476,861 + +0.0 476,862 - +0.9 476,862 - -0.8 476,862 - +1.3 476,862 - -0.7 476,889 - +0.9 476,982 + +1.4 476,983 - +0.6 477,015 + +0.2 477,039 + +0.7 477,093 + +0.1 477,093 + +1.6 477,093 + +0.4 477,093 + +0.6 477,093 + +1.3 477,094 - -0.9 477,094 - +0.5 477,094 - +0.1 477,094 - +0.3 477,094 - +1.9 477,114 + -0.9 477,115 - -0.2 477,159 + +1.0 477,261 + -0.4 477,346 - +0.1 477,354 + +0.5 477,510 + Ac3H11_4208 0.25 +0.7 477,510 + Ac3H11_4208 0.25 +0.2 477,510 + Ac3H11_4208 0.25 -1.5 477,511 - Ac3H11_4208 0.26 -0.3 477,511 - Ac3H11_4208 0.26 -0.5 477,511 - Ac3H11_4208 0.26 +0.4 477,511 - Ac3H11_4208 0.26 +2.2 477,511 - Ac3H11_4208 0.26 -1.5 477,511 - Ac3H11_4208 0.26 +0.2 477,511 - Ac3H11_4208 0.26 -1.2 477,514 + Ac3H11_4208 0.26 -0.1 477,514 + Ac3H11_4208 0.26 -1.4 477,514 + Ac3H11_4208 0.26 -0.7 477,514 + Ac3H11_4208 0.26 +0.8 477,514 + Ac3H11_4208 0.26 +0.8 477,515 - Ac3H11_4208 0.26 +0.5 477,515 - Ac3H11_4208 0.26 +0.6 477,515 - Ac3H11_4208 0.26 +0.9 477,515 - Ac3H11_4208 0.26 +0.3 477,515 - Ac3H11_4208 0.26 -0.7 477,515 - Ac3H11_4208 0.26 -0.1
Or see this region's nucleotide sequence