Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4134

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4133 and Ac3H11_4134 are separated by 99 nucleotidesAc3H11_4134 and Ac3H11_4135 are separated by 216 nucleotidesAc3H11_4135 and Ac3H11_4136 are separated by 38 nucleotides Ac3H11_4133 - Aldo-keto reductase, at 389,227 to 390,267 _4133 Ac3H11_4134 - hypothetical protein; putative signal peptide, at 390,367 to 390,993 _4134 Ac3H11_4135 - secreted protein, at 391,210 to 391,497 _4135 Ac3H11_4136 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase., at 391,536 to 392,381 _4136 Position (kb) 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 389.569 kb on + strand, within Ac3H11_4133at 389.569 kb on + strand, within Ac3H11_4133at 389.570 kb on - strand, within Ac3H11_4133at 389.597 kb on + strand, within Ac3H11_4133at 389.598 kb on - strand, within Ac3H11_4133at 389.598 kb on - strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.873 kb on - strand, within Ac3H11_4133at 390.070 kb on - strand, within Ac3H11_4133at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.613 kb on + strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.614 kb on - strand, within Ac3H11_4134at 390.692 kb on - strand, within Ac3H11_4134at 390.692 kb on - strand, within Ac3H11_4134at 390.727 kb on + strand, within Ac3H11_4134at 390.733 kb on + strand, within Ac3H11_4134at 390.756 kb on + strand, within Ac3H11_4134at 390.756 kb on + strand, within Ac3H11_4134at 390.756 kb on + strand, within Ac3H11_4134at 390.756 kb on + strand, within Ac3H11_4134at 390.757 kb on - strand, within Ac3H11_4134at 390.757 kb on - strand, within Ac3H11_4134at 391.042 kb on + strandat 391.046 kb on + strandat 391.046 kb on + strandat 391.047 kb on - strandat 391.047 kb on - strandat 391.047 kb on - strandat 391.047 kb on - strandat 391.047 kb on - strandat 391.234 kb on + strandat 391.234 kb on + strandat 391.234 kb on + strandat 391.234 kb on + strandat 391.235 kb on - strandat 391.235 kb on - strandat 391.312 kb on + strand, within Ac3H11_4135at 391.313 kb on - strand, within Ac3H11_4135at 391.495 kb on + strandat 391.495 kb on + strandat 391.495 kb on + strandat 391.496 kb on - strandat 391.496 kb on - strandat 391.496 kb on - strandat 391.510 kb on + strandat 391.510 kb on + strandat 391.510 kb on + strandat 391.510 kb on + strandat 391.511 kb on - strandat 391.511 kb on - strandat 391.511 kb on - strandat 391.705 kb on + strand, within Ac3H11_4136at 391.705 kb on + strand, within Ac3H11_4136at 391.705 kb on + strand, within Ac3H11_4136at 391.705 kb on + strand, within Ac3H11_4136at 391.705 kb on + strand, within Ac3H11_4136at 391.705 kb on + strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.706 kb on - strand, within Ac3H11_4136at 391.933 kb on + strand, within Ac3H11_4136at 391.933 kb on + strand, within Ac3H11_4136at 391.933 kb on + strand, within Ac3H11_4136at 391.933 kb on + strand, within Ac3H11_4136at 391.934 kb on - strand, within Ac3H11_4136at 391.934 kb on - strand, within Ac3H11_4136

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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389,569 + Ac3H11_4133 0.33 -2.1
389,569 + Ac3H11_4133 0.33 +0.9
389,570 - Ac3H11_4133 0.33 -0.3
389,597 + Ac3H11_4133 0.36 +0.3
389,598 - Ac3H11_4133 0.36 +0.3
389,598 - Ac3H11_4133 0.36 +1.0
389,629 + Ac3H11_4133 0.39 +1.3
389,629 + Ac3H11_4133 0.39 -0.0
389,629 + Ac3H11_4133 0.39 -0.1
389,630 - Ac3H11_4133 0.39 -0.4
389,630 - Ac3H11_4133 0.39 -2.1
389,630 - Ac3H11_4133 0.39 -0.5
389,630 - Ac3H11_4133 0.39 +0.6
389,630 - Ac3H11_4133 0.39 -0.7
389,630 - Ac3H11_4133 0.39 +0.6
389,630 - Ac3H11_4133 0.39 +1.9
389,632 + Ac3H11_4133 0.39 +0.4
389,632 + Ac3H11_4133 0.39 +0.2
389,632 + Ac3H11_4133 0.39 -0.1
389,632 + Ac3H11_4133 0.39 +0.5
389,632 + Ac3H11_4133 0.39 +0.3
389,632 + Ac3H11_4133 0.39 +0.1
389,633 - Ac3H11_4133 0.39 +0.2
389,633 - Ac3H11_4133 0.39 +0.5
389,633 - Ac3H11_4133 0.39 +1.0
389,633 - Ac3H11_4133 0.39 +0.1
389,633 - Ac3H11_4133 0.39 +1.6
389,797 + Ac3H11_4133 0.55 +0.9
389,797 + Ac3H11_4133 0.55 +0.5
389,797 + Ac3H11_4133 0.55 +0.1
389,873 - Ac3H11_4133 0.62 +0.6
390,070 - Ac3H11_4133 0.81 -0.2
390,613 + Ac3H11_4134 0.39 +0.0
390,613 + Ac3H11_4134 0.39 +1.0
390,613 + Ac3H11_4134 0.39 -1.9
390,613 + Ac3H11_4134 0.39 +0.6
390,613 + Ac3H11_4134 0.39 +0.8
390,613 + Ac3H11_4134 0.39 +1.4
390,613 + Ac3H11_4134 0.39 -2.1
390,613 + Ac3H11_4134 0.39 -0.3
390,613 + Ac3H11_4134 0.39 +0.3
390,614 - Ac3H11_4134 0.39 -0.2
390,614 - Ac3H11_4134 0.39 +1.9
390,614 - Ac3H11_4134 0.39 +2.9
390,614 - Ac3H11_4134 0.39 +1.2
390,614 - Ac3H11_4134 0.39 -0.8
390,614 - Ac3H11_4134 0.39 +0.5
390,614 - Ac3H11_4134 0.39 +0.1
390,692 - Ac3H11_4134 0.52 +1.3
390,692 - Ac3H11_4134 0.52 +1.3
390,727 + Ac3H11_4134 0.57 +0.3
390,733 + Ac3H11_4134 0.58 +0.7
390,756 + Ac3H11_4134 0.62 -0.3
390,756 + Ac3H11_4134 0.62 +1.1
390,756 + Ac3H11_4134 0.62 +0.3
390,756 + Ac3H11_4134 0.62 -3.0
390,757 - Ac3H11_4134 0.62 -0.8
390,757 - Ac3H11_4134 0.62 +0.0
391,042 + +0.6
391,046 + +1.1
391,046 + -0.3
391,047 - -2.7
391,047 - +0.5
391,047 - +0.6
391,047 - +0.6
391,047 - +0.2
391,234 + -0.2
391,234 + +1.9
391,234 + +0.3
391,234 + -0.0
391,235 - +0.0
391,235 - +0.3
391,312 + Ac3H11_4135 0.35 +1.3
391,313 - Ac3H11_4135 0.36 +0.8
391,495 + -0.2
391,495 + -0.1
391,495 + +1.8
391,496 - -0.7
391,496 - -0.7
391,496 - +2.9
391,510 + +1.1
391,510 + +1.1
391,510 + -0.1
391,510 + -0.2
391,511 - +4.3
391,511 - -0.9
391,511 - -1.1
391,705 + Ac3H11_4136 0.20 +1.6
391,705 + Ac3H11_4136 0.20 -0.9
391,705 + Ac3H11_4136 0.20 +0.6
391,705 + Ac3H11_4136 0.20 +0.8
391,705 + Ac3H11_4136 0.20 +1.3
391,705 + Ac3H11_4136 0.20 +0.1
391,706 - Ac3H11_4136 0.20 +0.9
391,706 - Ac3H11_4136 0.20 -0.2
391,706 - Ac3H11_4136 0.20 -0.5
391,706 - Ac3H11_4136 0.20 +2.1
391,706 - Ac3H11_4136 0.20 -1.5
391,706 - Ac3H11_4136 0.20 -1.5
391,933 + Ac3H11_4136 0.47 +0.7
391,933 + Ac3H11_4136 0.47 -1.2
391,933 + Ac3H11_4136 0.47 +1.1
391,933 + Ac3H11_4136 0.47 -0.7
391,934 - Ac3H11_4136 0.47 -0.4
391,934 - Ac3H11_4136 0.47 +0.2

Or see this region's nucleotide sequence