Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4132

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4131 and Ac3H11_4132 are separated by 483 nucleotidesAc3H11_4132 and Ac3H11_4133 are separated by 167 nucleotides Ac3H11_4131 - D-serine dehydratase transcriptional activator, at 386,720 to 387,673 _4131 Ac3H11_4132 - Transcriptional regulator, LysR family, at 388,157 to 389,059 _4132 Ac3H11_4133 - Aldo-keto reductase, at 389,227 to 390,267 _4133 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1 2at 387.344 kb on + strand, within Ac3H11_4131at 387.344 kb on + strand, within Ac3H11_4131at 387.344 kb on + strand, within Ac3H11_4131at 387.345 kb on - strand, within Ac3H11_4131at 387.345 kb on - strand, within Ac3H11_4131at 387.345 kb on - strand, within Ac3H11_4131at 387.345 kb on - strand, within Ac3H11_4131at 387.345 kb on - strand, within Ac3H11_4131at 387.554 kb on + strand, within Ac3H11_4131at 387.554 kb on + strand, within Ac3H11_4131at 387.554 kb on + strand, within Ac3H11_4131at 387.725 kb on + strandat 387.725 kb on + strandat 387.725 kb on + strandat 387.725 kb on + strandat 387.725 kb on + strandat 387.726 kb on - strandat 387.726 kb on - strandat 387.726 kb on - strandat 387.726 kb on - strandat 387.734 kb on + strandat 387.734 kb on + strandat 387.735 kb on - strandat 387.735 kb on - strandat 387.735 kb on - strandat 387.765 kb on - strandat 387.765 kb on - strandat 387.892 kb on + strandat 387.983 kb on - strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.010 kb on + strandat 388.011 kb on - strandat 388.011 kb on - strandat 388.011 kb on - strandat 388.011 kb on - strandat 388.018 kb on - strandat 388.018 kb on - strandat 388.018 kb on - strandat 388.076 kb on + strandat 388.159 kb on - strandat 388.224 kb on + strandat 388.225 kb on - strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.227 kb on + strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.228 kb on - strandat 388.317 kb on + strand, within Ac3H11_4132at 388.318 kb on - strand, within Ac3H11_4132at 388.318 kb on - strand, within Ac3H11_4132at 388.318 kb on - strand, within Ac3H11_4132at 388.318 kb on - strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.323 kb on + strand, within Ac3H11_4132at 388.324 kb on - strand, within Ac3H11_4132at 388.324 kb on - strand, within Ac3H11_4132at 388.324 kb on - strand, within Ac3H11_4132at 388.324 kb on - strand, within Ac3H11_4132at 388.449 kb on + strand, within Ac3H11_4132at 389.227 kb on - strandat 389.335 kb on + strand, within Ac3H11_4133at 389.335 kb on + strand, within Ac3H11_4133at 389.336 kb on - strand, within Ac3H11_4133at 389.336 kb on - strand, within Ac3H11_4133at 389.336 kb on - strand, within Ac3H11_4133at 389.569 kb on + strand, within Ac3H11_4133at 389.569 kb on + strand, within Ac3H11_4133at 389.570 kb on - strand, within Ac3H11_4133at 389.597 kb on + strand, within Ac3H11_4133at 389.598 kb on - strand, within Ac3H11_4133at 389.598 kb on - strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.629 kb on + strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.630 kb on - strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.632 kb on + strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.633 kb on - strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.797 kb on + strand, within Ac3H11_4133at 389.873 kb on - strand, within Ac3H11_4133

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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387,344 + Ac3H11_4131 0.65 -0.5
387,344 + Ac3H11_4131 0.65 +0.8
387,344 + Ac3H11_4131 0.65 +1.0
387,345 - Ac3H11_4131 0.66 -0.5
387,345 - Ac3H11_4131 0.66 -1.1
387,345 - Ac3H11_4131 0.66 +0.3
387,345 - Ac3H11_4131 0.66 +0.6
387,345 - Ac3H11_4131 0.66 +0.4
387,554 + Ac3H11_4131 0.87 +0.1
387,554 + Ac3H11_4131 0.87 +1.0
387,554 + Ac3H11_4131 0.87 -2.2
387,725 + -0.5
387,725 + -0.6
387,725 + +0.3
387,725 + -1.0
387,725 + +0.1
387,726 - +2.3
387,726 - +0.9
387,726 - +0.4
387,726 - +0.4
387,734 + -1.1
387,734 + -0.1
387,735 - -2.0
387,735 - -1.2
387,735 - +1.3
387,765 - -0.2
387,765 - +0.9
387,892 + +0.8
387,983 - +0.3
388,010 + -0.7
388,010 + +1.0
388,010 + -0.8
388,010 + +0.8
388,010 + +0.2
388,010 + -0.2
388,010 + +1.2
388,011 - +0.9
388,011 - +0.2
388,011 - -2.7
388,011 - +0.4
388,018 - -0.2
388,018 - -0.3
388,018 - +1.2
388,076 + -0.4
388,159 - +0.4
388,224 + -0.3
388,225 - -0.8
388,227 + -0.7
388,227 + -0.2
388,227 + +0.9
388,227 + -0.7
388,227 + +0.1
388,227 + -1.0
388,227 + -0.3
388,228 - +0.7
388,228 - +2.1
388,228 - -0.7
388,228 - -1.3
388,228 - -0.2
388,228 - +0.3
388,228 - +0.5
388,317 + Ac3H11_4132 0.18 +0.1
388,318 - Ac3H11_4132 0.18 -0.5
388,318 - Ac3H11_4132 0.18 +1.1
388,318 - Ac3H11_4132 0.18 +0.8
388,318 - Ac3H11_4132 0.18 +1.6
388,323 + Ac3H11_4132 0.18 -0.4
388,323 + Ac3H11_4132 0.18 +0.3
388,323 + Ac3H11_4132 0.18 +1.4
388,323 + Ac3H11_4132 0.18 -1.3
388,323 + Ac3H11_4132 0.18 +1.3
388,323 + Ac3H11_4132 0.18 +0.8
388,324 - Ac3H11_4132 0.18 +0.8
388,324 - Ac3H11_4132 0.18 +0.0
388,324 - Ac3H11_4132 0.18 -0.9
388,324 - Ac3H11_4132 0.18 +1.5
388,449 + Ac3H11_4132 0.32 -2.1
389,227 - +0.5
389,335 + Ac3H11_4133 0.10 -0.9
389,335 + Ac3H11_4133 0.10 -0.4
389,336 - Ac3H11_4133 0.10 -0.1
389,336 - Ac3H11_4133 0.10 +1.6
389,336 - Ac3H11_4133 0.10 +0.0
389,569 + Ac3H11_4133 0.33 -2.1
389,569 + Ac3H11_4133 0.33 +0.9
389,570 - Ac3H11_4133 0.33 -0.3
389,597 + Ac3H11_4133 0.36 +0.3
389,598 - Ac3H11_4133 0.36 +0.3
389,598 - Ac3H11_4133 0.36 +1.0
389,629 + Ac3H11_4133 0.39 +1.3
389,629 + Ac3H11_4133 0.39 -0.0
389,629 + Ac3H11_4133 0.39 -0.1
389,630 - Ac3H11_4133 0.39 -0.4
389,630 - Ac3H11_4133 0.39 -2.1
389,630 - Ac3H11_4133 0.39 -0.5
389,630 - Ac3H11_4133 0.39 +0.6
389,630 - Ac3H11_4133 0.39 -0.7
389,630 - Ac3H11_4133 0.39 +0.6
389,630 - Ac3H11_4133 0.39 +1.9
389,632 + Ac3H11_4133 0.39 +0.4
389,632 + Ac3H11_4133 0.39 +0.2
389,632 + Ac3H11_4133 0.39 -0.1
389,632 + Ac3H11_4133 0.39 +0.5
389,632 + Ac3H11_4133 0.39 +0.3
389,632 + Ac3H11_4133 0.39 +0.1
389,633 - Ac3H11_4133 0.39 +0.2
389,633 - Ac3H11_4133 0.39 +0.5
389,633 - Ac3H11_4133 0.39 +1.0
389,633 - Ac3H11_4133 0.39 +0.1
389,633 - Ac3H11_4133 0.39 +1.6
389,797 + Ac3H11_4133 0.55 +0.9
389,797 + Ac3H11_4133 0.55 +0.5
389,797 + Ac3H11_4133 0.55 +0.1
389,873 - Ac3H11_4133 0.62 +0.6

Or see this region's nucleotide sequence