Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3800 and Ac3H11_3801 are separated by 8 nucleotides Ac3H11_3801 and Ac3H11_3802 overlap by 4 nucleotides Ac3H11_3802 and Ac3H11_3803 are separated by 23 nucleotides
Ac3H11_3800 - Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2), at 11,386 to 12,600
_3800
Ac3H11_3801 - putative lipoprotein, at 12,609 to 12,848
_3801
Ac3H11_3802 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 12,845 to 13,462
_3802
Ac3H11_3803 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 13,486 to 16,455
_3803
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.942 kb on + strand, within Ac3H11_3800 at 11.943 kb on - strand, within Ac3H11_3800 at 11.943 kb on - strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.146 kb on + strand, within Ac3H11_3800 at 12.248 kb on + strand at 12.326 kb on + strand, within Ac3H11_3800 at 12.326 kb on + strand, within Ac3H11_3800 at 12.327 kb on - strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.416 kb on + strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.417 kb on - strand, within Ac3H11_3800 at 12.631 kb on + strand at 12.631 kb on + strand at 12.631 kb on + strand at 12.631 kb on + strand at 12.647 kb on - strand, within Ac3H11_3801 at 12.647 kb on - strand, within Ac3H11_3801 at 12.736 kb on + strand, within Ac3H11_3801 at 12.737 kb on - strand, within Ac3H11_3801 at 12.889 kb on - strand at 12.889 kb on - strand at 12.889 kb on - strand at 12.889 kb on - strand at 13.050 kb on + strand, within Ac3H11_3802 at 13.051 kb on - strand, within Ac3H11_3802 at 13.051 kb on - strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.179 kb on + strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.180 kb on - strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.188 kb on + strand, within Ac3H11_3802 at 13.189 kb on - strand, within Ac3H11_3802 at 13.245 kb on + strand, within Ac3H11_3802 at 13.245 kb on + strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.246 kb on - strand, within Ac3H11_3802 at 13.548 kb on - strand at 13.548 kb on - strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.553 kb on + strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.554 kb on - strand at 13.610 kb on + strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.611 kb on - strand at 13.613 kb on + strand at 13.613 kb on + strand at 13.614 kb on - strand at 13.614 kb on - strand at 13.614 kb on - strand at 13.863 kb on - strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.946 kb on + strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.947 kb on - strand, within Ac3H11_3803 at 13.995 kb on - strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.024 kb on + strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.025 kb on - strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.375 kb on + strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.376 kb on - strand, within Ac3H11_3803 at 14.417 kb on + strand, within Ac3H11_3803 at 14.441 kb on + strand, within Ac3H11_3803 at 14.442 kb on - strand, within Ac3H11_3803 at 14.442 kb on - strand, within Ac3H11_3803
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 11,942 + Ac3H11_3800 0.46 -1.2 11,942 + Ac3H11_3800 0.46 -2.1 11,942 + Ac3H11_3800 0.46 +0.7 11,942 + Ac3H11_3800 0.46 +0.5 11,942 + Ac3H11_3800 0.46 +0.1 11,942 + Ac3H11_3800 0.46 +0.9 11,942 + Ac3H11_3800 0.46 -1.7 11,943 - Ac3H11_3800 0.46 -0.4 11,943 - Ac3H11_3800 0.46 +0.2 12,146 + Ac3H11_3800 0.63 -0.4 12,146 + Ac3H11_3800 0.63 +0.6 12,146 + Ac3H11_3800 0.63 -0.2 12,248 + +0.7 12,326 + Ac3H11_3800 0.77 +0.3 12,326 + Ac3H11_3800 0.77 +1.9 12,327 - Ac3H11_3800 0.77 -1.4 12,416 + Ac3H11_3800 0.85 -1.3 12,416 + Ac3H11_3800 0.85 -0.6 12,416 + Ac3H11_3800 0.85 -0.6 12,416 + Ac3H11_3800 0.85 +0.9 12,416 + Ac3H11_3800 0.85 -0.5 12,416 + Ac3H11_3800 0.85 -0.3 12,416 + Ac3H11_3800 0.85 -2.5 12,417 - Ac3H11_3800 0.85 -0.2 12,417 - Ac3H11_3800 0.85 -1.1 12,417 - Ac3H11_3800 0.85 +0.3 12,417 - Ac3H11_3800 0.85 -0.5 12,417 - Ac3H11_3800 0.85 +0.5 12,417 - Ac3H11_3800 0.85 +0.2 12,631 + -0.2 12,631 + +0.2 12,631 + +0.5 12,631 + -1.5 12,647 - Ac3H11_3801 0.16 +0.7 12,647 - Ac3H11_3801 0.16 +0.6 12,736 + Ac3H11_3801 0.53 +0.6 12,737 - Ac3H11_3801 0.53 -0.6 12,889 - +0.0 12,889 - -2.3 12,889 - -0.9 12,889 - -0.7 13,050 + Ac3H11_3802 0.33 -2.2 13,051 - Ac3H11_3802 0.33 +0.8 13,051 - Ac3H11_3802 0.33 -0.3 13,179 + Ac3H11_3802 0.54 +1.4 13,179 + Ac3H11_3802 0.54 -2.0 13,179 + Ac3H11_3802 0.54 -0.4 13,180 - Ac3H11_3802 0.54 +1.6 13,180 - Ac3H11_3802 0.54 +1.8 13,180 - Ac3H11_3802 0.54 -0.1 13,188 + Ac3H11_3802 0.56 -1.1 13,188 + Ac3H11_3802 0.56 -0.2 13,188 + Ac3H11_3802 0.56 -0.7 13,189 - Ac3H11_3802 0.56 +0.2 13,245 + Ac3H11_3802 0.65 -0.1 13,245 + Ac3H11_3802 0.65 -0.6 13,246 - Ac3H11_3802 0.65 -0.2 13,246 - Ac3H11_3802 0.65 +0.4 13,246 - Ac3H11_3802 0.65 -1.0 13,548 - -0.2 13,548 - -0.6 13,553 + +1.3 13,553 + -1.7 13,553 + -0.3 13,553 + -1.2 13,553 + -0.9 13,553 + +0.2 13,553 + +0.1 13,553 + -2.9 13,554 - -1.9 13,554 - +0.6 13,554 - +0.5 13,554 - +0.2 13,554 - -0.3 13,554 - -0.9 13,554 - -3.1 13,554 - +0.3 13,554 - +0.1 13,554 - +0.6 13,554 - +0.4 13,554 - +1.5 13,554 - +1.4 13,610 + -0.2 13,611 - -0.2 13,611 - -0.9 13,611 - +0.1 13,611 - -0.7 13,613 + -0.8 13,613 + -0.5 13,614 - +0.9 13,614 - -0.1 13,614 - -0.3 13,863 - Ac3H11_3803 0.13 -0.9 13,946 + Ac3H11_3803 0.15 -0.5 13,946 + Ac3H11_3803 0.15 -0.5 13,946 + Ac3H11_3803 0.15 +1.5 13,946 + Ac3H11_3803 0.15 +0.2 13,946 + Ac3H11_3803 0.15 +0.2 13,946 + Ac3H11_3803 0.15 -0.3 13,946 + Ac3H11_3803 0.15 -1.0 13,946 + Ac3H11_3803 0.15 +0.8 13,947 - Ac3H11_3803 0.16 +1.1 13,947 - Ac3H11_3803 0.16 -1.0 13,947 - Ac3H11_3803 0.16 +1.7 13,947 - Ac3H11_3803 0.16 -2.3 13,995 - Ac3H11_3803 0.17 +0.0 14,024 + Ac3H11_3803 0.18 -1.2 14,024 + Ac3H11_3803 0.18 +0.4 14,024 + Ac3H11_3803 0.18 -1.6 14,024 + Ac3H11_3803 0.18 -0.6 14,024 + Ac3H11_3803 0.18 +1.5 14,025 - Ac3H11_3803 0.18 -0.5 14,025 - Ac3H11_3803 0.18 +0.1 14,025 - Ac3H11_3803 0.18 +1.2 14,025 - Ac3H11_3803 0.18 -1.9 14,025 - Ac3H11_3803 0.18 +1.2 14,375 + Ac3H11_3803 0.30 +0.4 14,375 + Ac3H11_3803 0.30 -0.1 14,375 + Ac3H11_3803 0.30 -0.2 14,375 + Ac3H11_3803 0.30 +0.1 14,376 - Ac3H11_3803 0.30 -0.2 14,376 - Ac3H11_3803 0.30 +1.1 14,376 - Ac3H11_3803 0.30 +1.0 14,376 - Ac3H11_3803 0.30 -1.1 14,417 + Ac3H11_3803 0.31 -1.4 14,441 + Ac3H11_3803 0.32 +1.6 14,442 - Ac3H11_3803 0.32 +0.1 14,442 - Ac3H11_3803 0.32 +0.5
Or see this region's nucleotide sequence