Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3680 and Ac3H11_3681 are separated by 293 nucleotides Ac3H11_3681 and Ac3H11_3682 are separated by 203 nucleotides Ac3H11_3682 and Ac3H11_3683 are separated by 586 nucleotides
Ac3H11_3680 - putative regulatory prophage protein, at 35,090 to 36,721
_3680
Ac3H11_3681 - hypothetical protein, at 37,015 to 37,164
_3681
Ac3H11_3682 - hypothetical protein, at 37,368 to 37,865
_3682
Ac3H11_3683 - Integrase, at 38,452 to 39,783
_3683
Position (kb) 37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.393 kb on + strand, within Ac3H11_3680 at 36.393 kb on + strand, within Ac3H11_3680 at 36.393 kb on + strand, within Ac3H11_3680 at 36.393 kb on + strand, within Ac3H11_3680 at 36.393 kb on + strand, within Ac3H11_3680 at 36.394 kb on - strand, within Ac3H11_3680 at 36.394 kb on - strand, within Ac3H11_3680 at 36.573 kb on + strand at 36.573 kb on + strand at 36.574 kb on - strand at 36.574 kb on - strand at 36.617 kb on + strand at 36.617 kb on + strand at 36.618 kb on - strand at 36.618 kb on - strand at 36.701 kb on - strand at 36.755 kb on - strand at 36.755 kb on - strand at 36.814 kb on + strand at 36.814 kb on + strand at 36.814 kb on + strand at 36.814 kb on + strand at 36.814 kb on + strand at 36.815 kb on - strand at 36.815 kb on - strand at 36.815 kb on - strand at 36.901 kb on + strand at 36.901 kb on + strand at 36.902 kb on - strand at 36.902 kb on - strand at 36.905 kb on + strand at 36.905 kb on + strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.906 kb on - strand at 36.942 kb on + strand at 36.942 kb on + strand at 36.942 kb on + strand at 36.943 kb on - strand at 36.943 kb on - strand at 36.943 kb on - strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.956 kb on + strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.957 kb on - strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.960 kb on + strand at 36.961 kb on - strand at 36.961 kb on - strand at 36.961 kb on - strand at 36.961 kb on - strand at 36.961 kb on - strand at 36.986 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.991 kb on - strand at 36.991 kb on - strand at 36.991 kb on - strand at 36.991 kb on - strand at 37.016 kb on + strand at 37.016 kb on + strand at 37.016 kb on + strand at 37.017 kb on - strand at 37.098 kb on + strand, within Ac3H11_3681 at 37.098 kb on + strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.099 kb on - strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.133 kb on + strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.134 kb on - strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.140 kb on + strand, within Ac3H11_3681 at 37.141 kb on - strand, within Ac3H11_3681 at 37.141 kb on - strand, within Ac3H11_3681 at 37.141 kb on - strand, within Ac3H11_3681 at 37.141 kb on - strand, within Ac3H11_3681 at 37.279 kb on + strand at 37.292 kb on - strand at 37.292 kb on - strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.371 kb on + strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.372 kb on - strand at 37.380 kb on + strand at 37.380 kb on + strand at 37.380 kb on + strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.381 kb on - strand at 37.617 kb on + strand, within Ac3H11_3682 at 37.618 kb on - strand, within Ac3H11_3682 at 37.660 kb on - strand, within Ac3H11_3682 at 37.713 kb on + strand, within Ac3H11_3682 at 37.713 kb on + strand, within Ac3H11_3682 at 37.714 kb on - strand, within Ac3H11_3682 at 37.758 kb on + strand, within Ac3H11_3682 at 37.759 kb on - strand, within Ac3H11_3682 at 37.759 kb on - strand, within Ac3H11_3682 at 37.830 kb on + strand at 37.830 kb on + strand at 37.830 kb on + strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.831 kb on - strand at 37.851 kb on + strand at 37.851 kb on + strand at 37.867 kb on + strand at 37.867 kb on + strand at 37.867 kb on + strand at 37.868 kb on - strand at 37.868 kb on - strand at 37.868 kb on - strand at 37.868 kb on - strand at 37.868 kb on - strand at 38.079 kb on + strand at 38.234 kb on + strand at 38.234 kb on + strand at 38.235 kb on - strand at 38.235 kb on - strand at 38.235 kb on - strand at 38.235 kb on - strand at 38.353 kb on + strand at 38.353 kb on + strand at 38.354 kb on - strand at 38.354 kb on - strand at 38.395 kb on - strand at 38.395 kb on - strand at 38.395 kb on - strand at 38.395 kb on - strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.402 kb on + strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.403 kb on - strand at 38.564 kb on - strand at 38.564 kb on - strand at 38.564 kb on - strand at 38.564 kb on - strand at 38.564 kb on - strand at 38.591 kb on - strand, within Ac3H11_3683 at 38.632 kb on + strand, within Ac3H11_3683 at 38.792 kb on - strand, within Ac3H11_3683 at 38.792 kb on - strand, within Ac3H11_3683 at 38.859 kb on + strand, within Ac3H11_3683 at 38.859 kb on + strand, within Ac3H11_3683 at 38.859 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.863 kb on + strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683 at 38.864 kb on - strand, within Ac3H11_3683
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 36,393 + Ac3H11_3680 0.80 -0.1 36,393 + Ac3H11_3680 0.80 +1.0 36,393 + Ac3H11_3680 0.80 -0.1 36,393 + Ac3H11_3680 0.80 +0.4 36,393 + Ac3H11_3680 0.80 +1.3 36,394 - Ac3H11_3680 0.80 -0.6 36,394 - Ac3H11_3680 0.80 +2.9 36,573 + -1.4 36,573 + -1.0 36,574 - +0.2 36,574 - -0.7 36,617 + -0.4 36,617 + +0.0 36,618 - -1.8 36,618 - +0.8 36,701 - -0.3 36,755 - -1.1 36,755 - +0.7 36,814 + -1.3 36,814 + -0.1 36,814 + +1.0 36,814 + -0.0 36,814 + -2.6 36,815 - -0.4 36,815 - -0.7 36,815 - +0.3 36,901 + +2.1 36,901 + +0.3 36,902 - +0.4 36,902 - -0.1 36,905 + +1.0 36,905 + -0.6 36,906 - -2.1 36,906 - -0.1 36,906 - +0.9 36,906 - +2.5 36,906 - -0.9 36,906 - +1.0 36,906 - -2.0 36,906 - -1.8 36,906 - +0.3 36,906 - -1.6 36,906 - +0.3 36,942 + -1.6 36,942 + +0.0 36,942 + -0.8 36,943 - +0.7 36,943 - -1.4 36,943 - +0.3 36,956 + -0.8 36,956 + -1.8 36,956 + -1.1 36,956 + +0.0 36,956 + -0.0 36,956 + -0.7 36,956 + -0.9 36,956 + +0.9 36,956 + -0.5 36,956 + -2.1 36,956 + +0.5 36,956 + +2.3 36,957 - +0.3 36,957 - -0.4 36,957 - +0.6 36,957 - -0.5 36,957 - +0.4 36,957 - +1.0 36,957 - -0.3 36,957 - -0.1 36,957 - -2.1 36,957 - -0.3 36,957 - -0.1 36,957 - +0.6 36,957 - -1.8 36,957 - +0.7 36,960 + -1.2 36,960 + +0.7 36,960 + +1.7 36,960 + +1.2 36,960 + +0.9 36,960 + +2.0 36,960 + -0.6 36,961 - +0.6 36,961 - +1.6 36,961 - +0.6 36,961 - -0.7 36,961 - -2.4 36,986 + -1.6 36,990 + -0.5 36,990 + -0.9 36,990 + +0.4 36,990 + -0.3 36,990 + +0.9 36,990 + +0.7 36,990 + -0.5 36,990 + +0.7 36,991 - -3.1 36,991 - +0.7 36,991 - +1.0 36,991 - +1.5 37,016 + +0.3 37,016 + -0.1 37,016 + -1.3 37,017 - +0.4 37,098 + Ac3H11_3681 0.55 +1.7 37,098 + Ac3H11_3681 0.55 -0.4 37,099 - Ac3H11_3681 0.56 +0.7 37,099 - Ac3H11_3681 0.56 +0.1 37,099 - Ac3H11_3681 0.56 +0.3 37,099 - Ac3H11_3681 0.56 -1.2 37,099 - Ac3H11_3681 0.56 -1.6 37,099 - Ac3H11_3681 0.56 +0.8 37,133 + Ac3H11_3681 0.79 -1.6 37,133 + Ac3H11_3681 0.79 -1.1 37,133 + Ac3H11_3681 0.79 -1.1 37,133 + Ac3H11_3681 0.79 +0.0 37,133 + Ac3H11_3681 0.79 -0.4 37,133 + Ac3H11_3681 0.79 -0.1 37,133 + Ac3H11_3681 0.79 -1.5 37,133 + Ac3H11_3681 0.79 +3.0 37,133 + Ac3H11_3681 0.79 +0.2 37,133 + Ac3H11_3681 0.79 +0.1 37,133 + Ac3H11_3681 0.79 -2.3 37,133 + Ac3H11_3681 0.79 -1.7 37,134 - Ac3H11_3681 0.79 +1.0 37,134 - Ac3H11_3681 0.79 -0.6 37,134 - Ac3H11_3681 0.79 +0.5 37,134 - Ac3H11_3681 0.79 +0.3 37,134 - Ac3H11_3681 0.79 -2.4 37,134 - Ac3H11_3681 0.79 -0.1 37,134 - Ac3H11_3681 0.79 -2.2 37,134 - Ac3H11_3681 0.79 -0.1 37,134 - Ac3H11_3681 0.79 +0.2 37,134 - Ac3H11_3681 0.79 +0.4 37,134 - Ac3H11_3681 0.79 +0.2 37,140 + Ac3H11_3681 0.83 +1.1 37,140 + Ac3H11_3681 0.83 +0.6 37,140 + Ac3H11_3681 0.83 -1.1 37,140 + Ac3H11_3681 0.83 +1.1 37,140 + Ac3H11_3681 0.83 -0.5 37,140 + Ac3H11_3681 0.83 +1.3 37,141 - Ac3H11_3681 0.84 +1.0 37,141 - Ac3H11_3681 0.84 +0.2 37,141 - Ac3H11_3681 0.84 +0.3 37,141 - Ac3H11_3681 0.84 +0.2 37,279 + +0.6 37,292 - -2.2 37,292 - +1.0 37,371 + -0.4 37,371 + +1.2 37,371 + +0.7 37,371 + +1.7 37,371 + +0.8 37,371 + -1.5 37,371 + +0.1 37,371 + +0.0 37,372 - +0.4 37,372 - +0.3 37,372 - -0.7 37,372 - +1.2 37,372 - +0.4 37,372 - +0.1 37,372 - -0.3 37,372 - -1.1 37,380 + +0.7 37,380 + +0.4 37,380 + -0.9 37,381 - -2.0 37,381 - +0.9 37,381 - +0.0 37,381 - +1.6 37,381 - -1.5 37,381 - +0.4 37,381 - +2.0 37,617 + Ac3H11_3682 0.50 -0.9 37,618 - Ac3H11_3682 0.50 -0.5 37,660 - Ac3H11_3682 0.59 +0.9 37,713 + Ac3H11_3682 0.69 +0.7 37,713 + Ac3H11_3682 0.69 -0.0 37,714 - Ac3H11_3682 0.69 +0.6 37,758 + Ac3H11_3682 0.78 +0.2 37,759 - Ac3H11_3682 0.79 -1.1 37,759 - Ac3H11_3682 0.79 +0.3 37,830 + -0.7 37,830 + -0.6 37,830 + +1.5 37,831 - -0.4 37,831 - -0.5 37,831 - +0.5 37,831 - -0.5 37,831 - -0.8 37,851 + -2.9 37,851 + -1.4 37,867 + -0.8 37,867 + -3.6 37,867 + -0.4 37,868 - +1.4 37,868 - +0.5 37,868 - +0.9 37,868 - +0.6 37,868 - +0.0 38,079 + +0.3 38,234 + -0.8 38,234 + +0.5 38,235 - -0.1 38,235 - -0.0 38,235 - +0.8 38,235 - -0.6 38,353 + -2.5 38,353 + -0.5 38,354 - +0.3 38,354 - +0.3 38,395 - +2.0 38,395 - -0.7 38,395 - +0.9 38,395 - +0.2 38,402 + -0.3 38,402 + -0.1 38,402 + +0.4 38,402 + -0.1 38,402 + -1.7 38,402 + -1.3 38,402 + -1.7 38,402 + -0.9 38,402 + -0.1 38,402 + +0.4 38,402 + -0.0 38,402 + -1.1 38,403 - -1.1 38,403 - +0.3 38,403 - +0.1 38,403 - -0.6 38,403 - -0.5 38,403 - +0.7 38,403 - +1.1 38,403 - -0.3 38,403 - -0.8 38,403 - -1.7 38,564 - +1.0 38,564 - -1.0 38,564 - -0.1 38,564 - +0.0 38,564 - +0.2 38,591 - Ac3H11_3683 0.10 -1.4 38,632 + Ac3H11_3683 0.14 +2.0 38,792 - Ac3H11_3683 0.26 -0.3 38,792 - Ac3H11_3683 0.26 -3.0 38,859 + Ac3H11_3683 0.31 -1.6 38,859 + Ac3H11_3683 0.31 +1.6 38,859 + Ac3H11_3683 0.31 +0.0 38,863 + Ac3H11_3683 0.31 -0.1 38,863 + Ac3H11_3683 0.31 +0.4 38,863 + Ac3H11_3683 0.31 +0.6 38,863 + Ac3H11_3683 0.31 -0.3 38,863 + Ac3H11_3683 0.31 -0.2 38,863 + Ac3H11_3683 0.31 -0.1 38,863 + Ac3H11_3683 0.31 -0.2 38,863 + Ac3H11_3683 0.31 -0.3 38,863 + Ac3H11_3683 0.31 +1.4 38,864 - Ac3H11_3683 0.31 -0.1 38,864 - Ac3H11_3683 0.31 -1.7 38,864 - Ac3H11_3683 0.31 -1.1 38,864 - Ac3H11_3683 0.31 +0.8 38,864 - Ac3H11_3683 0.31 +0.3 38,864 - Ac3H11_3683 0.31 +2.5 38,864 - Ac3H11_3683 0.31 +0.6 38,864 - Ac3H11_3683 0.31 -0.3 38,864 - Ac3H11_3683 0.31 +0.1
Or see this region's nucleotide sequence