Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3609 and Ac3H11_3610 are separated by 90 nucleotides Ac3H11_3610 and Ac3H11_3611 overlap by 4 nucleotides Ac3H11_3611 and Ac3H11_3612 are separated by 10 nucleotides Ac3H11_3612 and Ac3H11_3613 overlap by 4 nucleotides
Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529
_3609
Ac3H11_3610 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 162,620 to 163,465
_3610
Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796
_3611
Ac3H11_3612 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 164,807 to 165,742
_3612
Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749
_3613
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 162.785 kb on + strand, within Ac3H11_3610 at 162.785 kb on + strand, within Ac3H11_3610 at 162.785 kb on + strand, within Ac3H11_3610 at 162.785 kb on + strand, within Ac3H11_3610 at 162.815 kb on - strand, within Ac3H11_3610 at 162.815 kb on - strand, within Ac3H11_3610 at 162.869 kb on - strand, within Ac3H11_3610 at 163.169 kb on + strand, within Ac3H11_3610 at 163.169 kb on + strand, within Ac3H11_3610 at 163.645 kb on + strand, within Ac3H11_3611 at 163.645 kb on + strand, within Ac3H11_3611 at 163.645 kb on + strand, within Ac3H11_3611 at 163.646 kb on - strand, within Ac3H11_3611 at 163.646 kb on - strand, within Ac3H11_3611 at 163.750 kb on + strand, within Ac3H11_3611 at 163.750 kb on + strand, within Ac3H11_3611 at 163.792 kb on + strand, within Ac3H11_3611 at 163.997 kb on - strand, within Ac3H11_3611 at 164.086 kb on + strand, within Ac3H11_3611 at 164.086 kb on + strand, within Ac3H11_3611 at 164.087 kb on - strand, within Ac3H11_3611 at 164.122 kb on + strand, within Ac3H11_3611 at 164.125 kb on + strand, within Ac3H11_3611 at 164.125 kb on + strand, within Ac3H11_3611 at 164.125 kb on + strand, within Ac3H11_3611 at 164.125 kb on + strand, within Ac3H11_3611 at 164.125 kb on + strand, within Ac3H11_3611 at 164.126 kb on - strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.140 kb on + strand, within Ac3H11_3611 at 164.141 kb on - strand, within Ac3H11_3611 at 164.141 kb on - strand at 164.141 kb on - strand, within Ac3H11_3611 at 164.276 kb on - strand, within Ac3H11_3611 at 164.284 kb on + strand, within Ac3H11_3611 at 164.285 kb on - strand, within Ac3H11_3611 at 164.285 kb on - strand, within Ac3H11_3611 at 164.285 kb on - strand, within Ac3H11_3611 at 164.285 kb on - strand, within Ac3H11_3611 at 164.413 kb on + strand, within Ac3H11_3611 at 164.413 kb on + strand, within Ac3H11_3611 at 164.414 kb on - strand, within Ac3H11_3611 at 164.441 kb on - strand, within Ac3H11_3611 at 164.452 kb on + strand, within Ac3H11_3611 at 164.452 kb on + strand, within Ac3H11_3611 at 164.453 kb on - strand, within Ac3H11_3611 at 164.507 kb on - strand, within Ac3H11_3611 at 164.507 kb on - strand, within Ac3H11_3611 at 164.507 kb on - strand, within Ac3H11_3611 at 164.591 kb on - strand, within Ac3H11_3611 at 164.711 kb on - strand at 164.734 kb on + strand at 164.735 kb on - strand at 164.737 kb on + strand at 164.737 kb on + strand at 164.737 kb on + strand at 164.738 kb on - strand at 164.738 kb on - strand at 164.756 kb on - strand at 164.826 kb on + strand at 164.826 kb on + strand at 164.827 kb on - strand at 165.036 kb on + strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.525 kb on - strand, within Ac3H11_3612
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 162,785 + Ac3H11_3610 0.20 +0.2 162,785 + Ac3H11_3610 0.20 -1.3 162,785 + Ac3H11_3610 0.20 +0.3 162,785 + Ac3H11_3610 0.20 -1.1 162,815 - Ac3H11_3610 0.23 +0.5 162,815 - Ac3H11_3610 0.23 +1.0 162,869 - Ac3H11_3610 0.29 -0.3 163,169 + Ac3H11_3610 0.65 +0.4 163,169 + Ac3H11_3610 0.65 +0.9 163,645 + Ac3H11_3611 0.14 +0.6 163,645 + Ac3H11_3611 0.14 +1.0 163,645 + Ac3H11_3611 0.14 +0.5 163,646 - Ac3H11_3611 0.14 -0.0 163,646 - Ac3H11_3611 0.14 +1.6 163,750 + Ac3H11_3611 0.22 +0.1 163,750 + Ac3H11_3611 0.22 +1.3 163,792 + Ac3H11_3611 0.25 +0.2 163,997 - Ac3H11_3611 0.40 -0.3 164,086 + Ac3H11_3611 0.47 +1.1 164,086 + Ac3H11_3611 0.47 +2.0 164,087 - Ac3H11_3611 0.47 -2.4 164,122 + Ac3H11_3611 0.49 +1.2 164,125 + Ac3H11_3611 0.50 +0.9 164,125 + Ac3H11_3611 0.50 +0.1 164,125 + Ac3H11_3611 0.50 -0.6 164,125 + Ac3H11_3611 0.50 +0.3 164,125 + Ac3H11_3611 0.50 -0.4 164,126 - Ac3H11_3611 0.50 -0.0 164,140 + Ac3H11_3611 0.51 -0.3 164,140 + Ac3H11_3611 0.51 +0.7 164,140 + Ac3H11_3611 0.51 -1.5 164,140 + Ac3H11_3611 0.51 +2.5 164,140 + Ac3H11_3611 0.51 -2.3 164,140 + Ac3H11_3611 0.51 -0.2 164,141 - Ac3H11_3611 0.51 -0.7 164,141 - +3.3 164,141 - Ac3H11_3611 0.51 -1.0 164,276 - Ac3H11_3611 0.61 +1.0 164,284 + Ac3H11_3611 0.62 -1.8 164,285 - Ac3H11_3611 0.62 -0.4 164,285 - Ac3H11_3611 0.62 +0.9 164,285 - Ac3H11_3611 0.62 +0.1 164,285 - Ac3H11_3611 0.62 -0.1 164,413 + Ac3H11_3611 0.71 +0.8 164,413 + Ac3H11_3611 0.71 +0.4 164,414 - Ac3H11_3611 0.71 -1.2 164,441 - Ac3H11_3611 0.73 +0.5 164,452 + Ac3H11_3611 0.74 -0.9 164,452 + Ac3H11_3611 0.74 -0.8 164,453 - Ac3H11_3611 0.74 +0.5 164,507 - Ac3H11_3611 0.78 +0.6 164,507 - Ac3H11_3611 0.78 +0.7 164,507 - Ac3H11_3611 0.78 +0.4 164,591 - Ac3H11_3611 0.85 +1.7 164,711 - -0.1 164,734 + +1.6 164,735 - +0.1 164,737 + +0.7 164,737 + -0.2 164,737 + -0.4 164,738 - +0.4 164,738 - -2.6 164,756 - +1.2 164,826 + -0.7 164,826 + -1.0 164,827 - -1.6 165,036 + Ac3H11_3612 0.24 -0.9 165,037 - Ac3H11_3612 0.25 +0.1 165,037 - Ac3H11_3612 0.25 -0.3 165,037 - Ac3H11_3612 0.25 +1.8 165,432 - Ac3H11_3612 0.67 +2.4 165,432 - Ac3H11_3612 0.67 -0.6 165,432 - Ac3H11_3612 0.67 -0.9 165,432 - Ac3H11_3612 0.67 +0.8 165,525 - Ac3H11_3612 0.77 +0.4
Or see this region's nucleotide sequence