Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3609

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3607 and Ac3H11_3608 are separated by 137 nucleotidesAc3H11_3608 and Ac3H11_3609 are separated by 30 nucleotidesAc3H11_3609 and Ac3H11_3610 are separated by 90 nucleotidesAc3H11_3610 and Ac3H11_3611 overlap by 4 nucleotides Ac3H11_3607 - Metallo-beta-lactamase superfamily protein, at 160,272 to 161,240 _3607 Ac3H11_3608 - hypothetical protein, at 161,378 to 161,746 _3608 Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529 _3609 Ac3H11_3610 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 162,620 to 163,465 _3610 Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796 _3611 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 160.802 kb on - strand, within Ac3H11_3607at 160.954 kb on + strand, within Ac3H11_3607at 160.955 kb on - strand, within Ac3H11_3607at 160.969 kb on + strand, within Ac3H11_3607at 160.969 kb on + strand, within Ac3H11_3607at 160.970 kb on - strand, within Ac3H11_3607at 160.970 kb on - strand, within Ac3H11_3607at 161.191 kb on + strandat 161.557 kb on - strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.693 kb on - strand, within Ac3H11_3608at 161.718 kb on + strandat 161.734 kb on - strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.763 kb on + strandat 161.778 kb on + strandat 161.779 kb on - strandat 161.779 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.345 kb on + strand, within Ac3H11_3609at 162.346 kb on - strand, within Ac3H11_3609at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.815 kb on - strand, within Ac3H11_3610at 162.815 kb on - strand, within Ac3H11_3610at 162.869 kb on - strand, within Ac3H11_3610at 163.169 kb on + strand, within Ac3H11_3610at 163.169 kb on + strand, within Ac3H11_3610

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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160,802 - Ac3H11_3607 0.55 -0.6
160,954 + Ac3H11_3607 0.70 -1.9
160,955 - Ac3H11_3607 0.70 +0.5
160,969 + Ac3H11_3607 0.72 +0.5
160,969 + Ac3H11_3607 0.72 +0.1
160,970 - Ac3H11_3607 0.72 +0.2
160,970 - Ac3H11_3607 0.72 -0.4
161,191 + +0.5
161,557 - Ac3H11_3608 0.49 -3.0
161,669 + Ac3H11_3608 0.79 +0.7
161,669 + Ac3H11_3608 0.79 +0.2
161,669 + Ac3H11_3608 0.79 +1.2
161,669 + Ac3H11_3608 0.79 +0.8
161,669 + Ac3H11_3608 0.79 -0.1
161,670 - Ac3H11_3608 0.79 +1.6
161,670 - Ac3H11_3608 0.79 +1.0
161,670 - Ac3H11_3608 0.79 +1.8
161,670 - Ac3H11_3608 0.79 +0.3
161,670 - Ac3H11_3608 0.79 +0.0
161,670 - Ac3H11_3608 0.79 -0.2
161,693 - Ac3H11_3608 0.85 +0.7
161,718 + -0.3
161,734 - +1.7
161,746 + +0.0
161,746 + -0.2
161,746 + -0.6
161,746 + +2.0
161,746 + -0.1
161,746 + -0.1
161,746 + +1.0
161,746 + +0.8
161,746 + -1.9
161,747 - +1.0
161,747 - -0.3
161,747 - +0.6
161,747 - +0.2
161,747 - -1.0
161,747 - -2.0
161,747 - -1.0
161,747 - +0.1
161,747 - +1.3
161,747 - -0.2
161,747 - -2.4
161,747 - +0.4
161,747 - +1.4
161,763 + -0.3
161,778 + +0.8
161,779 - -1.0
161,779 - +0.2
161,835 - +0.9
161,835 - +0.6
161,835 - +0.4
161,945 + Ac3H11_3609 0.22 +0.5
161,945 + Ac3H11_3609 0.22 +1.4
161,945 + Ac3H11_3609 0.22 -0.3
161,945 + Ac3H11_3609 0.22 -2.0
161,946 - Ac3H11_3609 0.22 -0.4
161,946 - Ac3H11_3609 0.22 +0.4
161,946 - Ac3H11_3609 0.22 +1.2
161,946 - Ac3H11_3609 0.22 -0.6
161,970 + Ac3H11_3609 0.26 -2.1
161,970 + Ac3H11_3609 0.26 +0.0
162,195 + Ac3H11_3609 0.56 -1.4
162,195 + Ac3H11_3609 0.56 -0.5
162,195 + Ac3H11_3609 0.56 +0.8
162,195 + Ac3H11_3609 0.56 -1.1
162,195 + Ac3H11_3609 0.56 -0.3
162,345 + Ac3H11_3609 0.75 -1.7
162,346 - Ac3H11_3609 0.76 +0.0
162,785 + Ac3H11_3610 0.20 +0.2
162,785 + Ac3H11_3610 0.20 -1.3
162,785 + Ac3H11_3610 0.20 +0.3
162,785 + Ac3H11_3610 0.20 -1.1
162,815 - Ac3H11_3610 0.23 +0.5
162,815 - Ac3H11_3610 0.23 +1.0
162,869 - Ac3H11_3610 0.29 -0.3
163,169 + Ac3H11_3610 0.65 +0.4
163,169 + Ac3H11_3610 0.65 +0.9

Or see this region's nucleotide sequence