Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3604

Experiment: phage 93.2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3602 and Ac3H11_3603 are separated by 42 nucleotidesAc3H11_3603 and Ac3H11_3604 are separated by 68 nucleotidesAc3H11_3604 and Ac3H11_3605 are separated by 348 nucleotidesAc3H11_3605 and Ac3H11_3606 are separated by 152 nucleotides Ac3H11_3602 - Response regulator, at 154,852 to 155,631 _3602 Ac3H11_3603 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 155,674 to 156,474 _3603 Ac3H11_3604 - Probable sensor histidine kinase protein (EC 2.7.3.-), at 156,543 to 159,020 _3604 Ac3H11_3605 - FIG00349159: hypothetical protein, at 159,369 to 159,539 _3605 Ac3H11_3606 - Mlr1171 protein, at 159,692 to 160,294 _3606 Position (kb) 156 157 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 155.629 kb on + strandat 155.646 kb on + strandat 155.646 kb on + strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.722 kb on - strandat 155.722 kb on - strandat 155.722 kb on - strandat 155.729 kb on + strandat 155.729 kb on + strandat 155.730 kb on - strandat 155.812 kb on + strand, within Ac3H11_3603at 155.812 kb on + strand, within Ac3H11_3603at 155.813 kb on - strand, within Ac3H11_3603at 155.813 kb on - strand, within Ac3H11_3603at 155.815 kb on + strand, within Ac3H11_3603at 155.815 kb on + strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.914 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 156.034 kb on + strand, within Ac3H11_3603at 156.034 kb on + strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.259 kb on + strand, within Ac3H11_3603at 156.260 kb on - strand, within Ac3H11_3603at 156.265 kb on + strand, within Ac3H11_3603at 156.341 kb on - strand, within Ac3H11_3603at 156.347 kb on - strand, within Ac3H11_3603at 156.407 kb on + strandat 156.408 kb on - strandat 156.429 kb on - strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.540 kb on - strandat 156.540 kb on - strandat 156.540 kb on - strandat 156.860 kb on + strand, within Ac3H11_3604at 156.861 kb on - strand, within Ac3H11_3604at 156.946 kb on + strand, within Ac3H11_3604at 156.946 kb on + strand, within Ac3H11_3604at 157.022 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.155 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.242 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.272 kb on - strand, within Ac3H11_3604at 157.417 kb on + strand, within Ac3H11_3604at 157.418 kb on - strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.605 kb on + strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.606 kb on - strand, within Ac3H11_3604at 157.631 kb on + strand, within Ac3H11_3604at 157.632 kb on - strand, within Ac3H11_3604at 157.632 kb on - strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.745 kb on + strand, within Ac3H11_3604at 157.746 kb on - strand, within Ac3H11_3604at 157.746 kb on - strand, within Ac3H11_3604at 157.746 kb on - strand, within Ac3H11_3604at 157.746 kb on - strand, within Ac3H11_3604at 157.746 kb on - strand, within Ac3H11_3604at 157.769 kb on - strand, within Ac3H11_3604at 157.769 kb on - strand, within Ac3H11_3604at 158.001 kb on + strand, within Ac3H11_3604at 158.002 kb on - strand, within Ac3H11_3604at 158.002 kb on - strand, within Ac3H11_3604at 158.002 kb on - strand, within Ac3H11_3604at 158.417 kb on - strand, within Ac3H11_3604at 158.417 kb on - strand, within Ac3H11_3604at 158.922 kb on + strandat 158.922 kb on + strandat 158.922 kb on + strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 159.018 kb on + strandat 159.134 kb on + strandat 159.177 kb on + strandat 159.178 kb on - strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.472 kb on + strand, within Ac3H11_3605at 159.488 kb on + strand, within Ac3H11_3605at 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.576 kb on + strandat 159.995 kb on + strand, within Ac3H11_3606at 159.995 kb on + strand, within Ac3H11_3606at 159.996 kb on - strand, within Ac3H11_3606

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
remove
155,629 + +3.0
155,646 + -0.3
155,646 + +0.0
155,647 - -0.3
155,647 - +0.9
155,647 - +0.1
155,647 - -0.6
155,721 + +0.4
155,721 + -0.0
155,721 + -0.5
155,721 + +0.7
155,722 - -2.4
155,722 - -1.4
155,722 - +0.7
155,729 + +1.8
155,729 + -0.5
155,730 - +0.1
155,812 + Ac3H11_3603 0.17 -1.6
155,812 + Ac3H11_3603 0.17 -0.9
155,813 - Ac3H11_3603 0.17 -1.0
155,813 - Ac3H11_3603 0.17 -0.3
155,815 + Ac3H11_3603 0.18 +0.7
155,815 + Ac3H11_3603 0.18 -0.5
155,816 - Ac3H11_3603 0.18 +1.2
155,816 - Ac3H11_3603 0.18 +1.2
155,816 - Ac3H11_3603 0.18 +0.5
155,816 - Ac3H11_3603 0.18 +1.1
155,828 - Ac3H11_3603 0.19 -0.6
155,828 - Ac3H11_3603 0.19 -0.9
155,828 - Ac3H11_3603 0.19 +1.2
155,914 + Ac3H11_3603 0.30 +0.4
155,918 + Ac3H11_3603 0.30 +0.6
155,918 + Ac3H11_3603 0.30 -0.6
155,918 + Ac3H11_3603 0.30 +0.1
155,918 + Ac3H11_3603 0.30 +0.6
155,918 + Ac3H11_3603 0.30 +0.7
155,919 - Ac3H11_3603 0.31 +0.4
155,919 - Ac3H11_3603 0.31 -0.1
155,919 - Ac3H11_3603 0.31 +0.8
155,919 - Ac3H11_3603 0.31 +0.2
155,919 - Ac3H11_3603 0.31 -0.4
155,919 - Ac3H11_3603 0.31 +0.0
156,034 + Ac3H11_3603 0.45 +0.3
156,034 + Ac3H11_3603 0.45 -1.3
156,035 - Ac3H11_3603 0.45 +1.7
156,035 - Ac3H11_3603 0.45 +0.6
156,035 - Ac3H11_3603 0.45 +2.3
156,052 + Ac3H11_3603 0.47 +0.6
156,052 + Ac3H11_3603 0.47 +1.2
156,052 + Ac3H11_3603 0.47 +1.2
156,052 + Ac3H11_3603 0.47 -0.5
156,052 + Ac3H11_3603 0.47 -0.3
156,053 - Ac3H11_3603 0.47 +0.4
156,053 - Ac3H11_3603 0.47 -1.1
156,053 - Ac3H11_3603 0.47 +0.4
156,053 - Ac3H11_3603 0.47 -0.8
156,053 - Ac3H11_3603 0.47 +0.7
156,053 - Ac3H11_3603 0.47 +0.7
156,053 - Ac3H11_3603 0.47 -1.0
156,053 - Ac3H11_3603 0.47 -0.6
156,053 - Ac3H11_3603 0.47 -0.2
156,259 + Ac3H11_3603 0.73 -0.4
156,260 - Ac3H11_3603 0.73 +0.0
156,265 + Ac3H11_3603 0.74 -1.4
156,341 - Ac3H11_3603 0.83 -0.3
156,347 - Ac3H11_3603 0.84 +0.2
156,407 + -1.8
156,408 - +0.8
156,429 - +2.2
156,539 + +1.4
156,539 + +0.7
156,539 + +0.2
156,539 + +1.0
156,539 + +0.6
156,539 + +1.1
156,539 + +0.6
156,540 - +0.3
156,540 - +0.4
156,540 - +0.6
156,860 + Ac3H11_3604 0.13 -0.6
156,861 - Ac3H11_3604 0.13 -1.6
156,946 + Ac3H11_3604 0.16 -0.0
156,946 + Ac3H11_3604 0.16 +1.2
157,022 - Ac3H11_3604 0.19 -1.3
157,033 - Ac3H11_3604 0.20 +0.4
157,033 - Ac3H11_3604 0.20 +0.3
157,033 - Ac3H11_3604 0.20 +0.6
157,033 - Ac3H11_3604 0.20 +0.8
157,033 - Ac3H11_3604 0.20 +0.6
157,033 - Ac3H11_3604 0.20 +0.2
157,038 + Ac3H11_3604 0.20 +1.3
157,038 + Ac3H11_3604 0.20 +2.8
157,038 + Ac3H11_3604 0.20 -3.2
157,038 + Ac3H11_3604 0.20 -0.5
157,039 - Ac3H11_3604 0.20 +0.6
157,039 - Ac3H11_3604 0.20 -0.9
157,039 - Ac3H11_3604 0.20 +0.8
157,039 - Ac3H11_3604 0.20 +0.7
157,155 + Ac3H11_3604 0.25 -0.2
157,168 + Ac3H11_3604 0.25 -2.8
157,168 + Ac3H11_3604 0.25 -2.1
157,168 + Ac3H11_3604 0.25 -0.4
157,168 + Ac3H11_3604 0.25 -0.7
157,169 - Ac3H11_3604 0.25 +0.2
157,169 - Ac3H11_3604 0.25 +1.0
157,169 - Ac3H11_3604 0.25 +0.9
157,242 + Ac3H11_3604 0.28 -1.6
157,269 + Ac3H11_3604 0.29 -0.7
157,269 + Ac3H11_3604 0.29 +0.0
157,269 + Ac3H11_3604 0.29 -1.2
157,269 + Ac3H11_3604 0.29 -2.3
157,270 - Ac3H11_3604 0.29 +0.3
157,270 - Ac3H11_3604 0.29 -0.5
157,270 - Ac3H11_3604 0.29 +0.9
157,272 - Ac3H11_3604 0.29 +0.3
157,417 + Ac3H11_3604 0.35 +0.2
157,418 - Ac3H11_3604 0.35 +1.2
157,605 + Ac3H11_3604 0.43 -0.1
157,605 + Ac3H11_3604 0.43 -0.3
157,605 + Ac3H11_3604 0.43 +0.4
157,605 + Ac3H11_3604 0.43 -0.1
157,605 + Ac3H11_3604 0.43 -0.0
157,605 + Ac3H11_3604 0.43 -1.4
157,605 + Ac3H11_3604 0.43 -1.3
157,606 - Ac3H11_3604 0.43 +0.9
157,606 - Ac3H11_3604 0.43 +1.2
157,606 - Ac3H11_3604 0.43 -0.8
157,606 - Ac3H11_3604 0.43 -1.9
157,606 - Ac3H11_3604 0.43 +0.6
157,606 - Ac3H11_3604 0.43 +0.8
157,631 + Ac3H11_3604 0.44 +2.7
157,632 - Ac3H11_3604 0.44 -0.0
157,632 - Ac3H11_3604 0.44 -0.6
157,745 + Ac3H11_3604 0.49 +0.9
157,745 + Ac3H11_3604 0.49 +0.4
157,745 + Ac3H11_3604 0.49 +0.2
157,745 + Ac3H11_3604 0.49 -2.3
157,745 + Ac3H11_3604 0.49 +1.1
157,745 + Ac3H11_3604 0.49 -1.3
157,745 + Ac3H11_3604 0.49 -3.3
157,745 + Ac3H11_3604 0.49 +0.4
157,745 + Ac3H11_3604 0.49 +2.2
157,745 + Ac3H11_3604 0.49 +0.4
157,745 + Ac3H11_3604 0.49 -0.7
157,745 + Ac3H11_3604 0.49 +1.9
157,745 + Ac3H11_3604 0.49 +1.4
157,745 + Ac3H11_3604 0.49 -0.3
157,745 + Ac3H11_3604 0.49 -0.0
157,746 - Ac3H11_3604 0.49 -1.2
157,746 - Ac3H11_3604 0.49 -0.6
157,746 - Ac3H11_3604 0.49 +0.2
157,746 - Ac3H11_3604 0.49 -1.7
157,746 - Ac3H11_3604 0.49 +0.5
157,769 - Ac3H11_3604 0.49 -0.3
157,769 - Ac3H11_3604 0.49 +0.5
158,001 + Ac3H11_3604 0.59 +2.0
158,002 - Ac3H11_3604 0.59 +0.3
158,002 - Ac3H11_3604 0.59 -0.0
158,002 - Ac3H11_3604 0.59 -0.1
158,417 - Ac3H11_3604 0.76 +1.0
158,417 - Ac3H11_3604 0.76 -0.6
158,922 + +0.0
158,922 + -0.0
158,922 + -1.1
158,923 - +0.7
158,923 - +0.7
158,923 - +0.3
158,923 - +0.3
158,923 - -1.1
158,923 - +0.2
159,018 + -0.4
159,134 + -1.8
159,177 + -0.9
159,178 - -0.4
159,279 + -1.4
159,279 + +1.2
159,279 + +2.0
159,279 + +1.3
159,279 + -0.1
159,472 + Ac3H11_3605 0.60 +0.2
159,488 + Ac3H11_3605 0.70 +2.0
159,542 + +1.0
159,542 + +0.8
159,542 + +0.7
159,542 + +0.2
159,542 + -0.2
159,542 + -0.8
159,542 + -1.1
159,543 - +2.0
159,543 - +0.2
159,543 - -0.5
159,543 - +0.5
159,543 - -0.2
159,543 - +0.9
159,543 - -0.7
159,543 - +0.0
159,543 - +2.0
159,576 + -0.4
159,995 + Ac3H11_3606 0.50 +3.4
159,995 + Ac3H11_3606 0.50 +0.3
159,996 - Ac3H11_3606 0.50 +0.3

Or see this region's nucleotide sequence