Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3526

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3524 and Ac3H11_3525 are separated by 96 nucleotidesAc3H11_3525 and Ac3H11_3526 overlap by 36 nucleotidesAc3H11_3526 and Ac3H11_3527 are separated by 115 nucleotides Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193 _3524 Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421 _3525 Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324 _3526 Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925 _3527 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.533 kb on - strand, within Ac3H11_3524at 70.605 kb on - strand, within Ac3H11_3524at 71.163 kb on + strandat 71.163 kb on + strandat 71.163 kb on + strandat 71.164 kb on - strandat 71.164 kb on - strandat 71.291 kb on + strandat 71.292 kb on - strandat 71.292 kb on - strandat 71.292 kb on - strandat 71.349 kb on + strand, within Ac3H11_3525at 71.595 kb on + strand, within Ac3H11_3526at 71.596 kb on - strand, within Ac3H11_3526at 71.961 kb on + strand, within Ac3H11_3526at 71.961 kb on + strand, within Ac3H11_3526at 71.993 kb on - strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.270 kb on + strandat 72.322 kb on + strandat 72.338 kb on - strandat 72.457 kb on + strandat 73.109 kb on - strandat 73.109 kb on - strandat 73.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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70,493 + Ac3H11_3524 0.30 +0.8
70,493 + Ac3H11_3524 0.30 +0.1
70,493 + Ac3H11_3524 0.30 -0.3
70,493 + Ac3H11_3524 0.30 -0.4
70,494 - Ac3H11_3524 0.31 +0.4
70,494 - Ac3H11_3524 0.31 -0.5
70,494 - Ac3H11_3524 0.31 +0.3
70,494 - Ac3H11_3524 0.31 -2.6
70,494 - Ac3H11_3524 0.31 -0.2
70,494 - Ac3H11_3524 0.31 +1.3
70,494 - Ac3H11_3524 0.31 -1.6
70,532 + Ac3H11_3524 0.34 -0.2
70,532 + Ac3H11_3524 0.34 -0.4
70,532 + Ac3H11_3524 0.34 +0.3
70,532 + Ac3H11_3524 0.34 +0.3
70,532 + Ac3H11_3524 0.34 -0.5
70,533 - Ac3H11_3524 0.34 -0.6
70,605 - Ac3H11_3524 0.42 -1.6
71,163 + +1.2
71,163 + -1.3
71,163 + -0.3
71,164 - -3.1
71,164 - +2.0
71,291 + -0.3
71,292 - -1.6
71,292 - -1.3
71,292 - -1.3
71,349 + Ac3H11_3525 0.45 -2.7
71,595 + Ac3H11_3526 0.22 +0.5
71,596 - Ac3H11_3526 0.22 +0.7
71,961 + Ac3H11_3526 0.61 +0.4
71,961 + Ac3H11_3526 0.61 -0.5
71,993 - Ac3H11_3526 0.65 -0.1
72,157 + Ac3H11_3526 0.82 +0.9
72,157 + Ac3H11_3526 0.82 -0.7
72,157 + Ac3H11_3526 0.82 +0.6
72,158 - Ac3H11_3526 0.82 -0.4
72,158 - Ac3H11_3526 0.82 +0.6
72,158 - Ac3H11_3526 0.82 +0.1
72,217 + Ac3H11_3526 0.88 -0.4
72,217 + Ac3H11_3526 0.88 +0.1
72,217 + Ac3H11_3526 0.88 +0.4
72,270 + +0.1
72,322 + -0.1
72,338 - +0.3
72,457 + -0.6
73,109 - -0.8
73,109 - +0.7
73,187 - +1.6

Or see this region's nucleotide sequence