Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_347 and Ac3H11_348 are separated by 28 nucleotides Ac3H11_348 and Ac3H11_349 overlap by 1 nucleotides Ac3H11_349 and Ac3H11_350 are separated by 59 nucleotides Ac3H11_350 and Ac3H11_351 are separated by 34 nucleotides Ac3H11_351 and Ac3H11_352 are separated by 3 nucleotides Ac3H11_352 and Ac3H11_353 are separated by 13 nucleotides
Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197
_347
Ac3H11_348 - hypothetical protein, at 24,226 to 24,549
_348
Ac3H11_349 - hypothetical protein, at 24,549 to 24,758
_349
Ac3H11_350 - hypothetical protein, at 24,818 to 25,024
_350
Ac3H11_351 - hypothetical protein, at 25,059 to 25,223
_351
Ac3H11_352 - hypothetical protein, at 25,227 to 25,445
_352
Ac3H11_353 - PE-PGRS FAMILY PROTEIN, at 25,459 to 27,096
_353
Position (kb) 24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.613 kb on + strand, within Ac3H11_347 at 23.739 kb on + strand, within Ac3H11_347 at 23.739 kb on + strand, within Ac3H11_347 at 23.740 kb on - strand at 23.827 kb on + strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.983 kb on + strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 24.127 kb on + strand at 24.165 kb on - strand at 24.195 kb on + strand at 24.195 kb on + strand at 24.196 kb on - strand at 24.196 kb on - strand at 24.278 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.555 kb on + strand at 24.556 kb on - strand at 24.601 kb on - strand, within Ac3H11_349 at 24.601 kb on - strand, within Ac3H11_349 at 24.791 kb on - strand at 24.800 kb on + strand at 24.800 kb on + strand at 24.801 kb on - strand at 24.801 kb on - strand at 25.188 kb on - strand at 25.188 kb on - strand, within Ac3H11_351 at 25.443 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.601 kb on + strand at 25.602 kb on - strand at 25.602 kb on - strand at 25.602 kb on - strand at 25.724 kb on + strand, within Ac3H11_353 at 25.725 kb on - strand, within Ac3H11_353 at 25.725 kb on - strand, within Ac3H11_353
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 23,613 + Ac3H11_347 0.41 +0.9 23,739 + Ac3H11_347 0.53 +0.7 23,739 + Ac3H11_347 0.53 -1.1 23,740 - -1.3 23,827 + Ac3H11_347 0.62 +1.4 23,828 - Ac3H11_347 0.63 +1.9 23,828 - Ac3H11_347 0.63 -1.1 23,828 - Ac3H11_347 0.63 +1.5 23,842 + Ac3H11_347 0.64 -0.4 23,842 + Ac3H11_347 0.64 +1.1 23,842 + Ac3H11_347 0.64 +0.9 23,842 + Ac3H11_347 0.64 -1.9 23,842 + Ac3H11_347 0.64 -0.7 23,842 + Ac3H11_347 0.64 -2.2 23,842 + Ac3H11_347 0.64 +0.3 23,842 + Ac3H11_347 0.64 -0.5 23,842 + Ac3H11_347 0.64 -2.5 23,843 - Ac3H11_347 0.64 +0.1 23,843 - Ac3H11_347 0.64 +0.5 23,843 - Ac3H11_347 0.64 -0.2 23,843 - Ac3H11_347 0.64 -0.5 23,843 - Ac3H11_347 0.64 -0.6 23,843 - Ac3H11_347 0.64 +2.9 23,843 - Ac3H11_347 0.64 +1.4 23,843 - Ac3H11_347 0.64 -0.1 23,983 + Ac3H11_347 0.78 +0.9 23,984 - Ac3H11_347 0.78 +0.8 23,984 - Ac3H11_347 0.78 -2.9 23,984 - Ac3H11_347 0.78 +0.3 24,127 + -0.7 24,165 - -1.2 24,195 + +0.3 24,195 + -0.9 24,196 - -0.4 24,196 - -0.1 24,278 + Ac3H11_348 0.16 +0.9 24,354 + Ac3H11_348 0.40 +0.3 24,354 + Ac3H11_348 0.40 -0.4 24,354 + Ac3H11_348 0.40 -1.6 24,555 + -0.9 24,556 - -1.1 24,601 - Ac3H11_349 0.25 -1.7 24,601 - Ac3H11_349 0.25 -0.6 24,791 - +0.6 24,800 + -1.5 24,800 + +0.1 24,801 - -0.1 24,801 - -1.5 25,188 - +0.3 25,188 - Ac3H11_351 0.78 -0.7 25,443 + -0.6 25,536 + -0.3 25,536 + +1.3 25,536 + +0.7 25,536 + +1.9 25,537 - +1.1 25,537 - +1.1 25,537 - -1.3 25,537 - -2.4 25,537 - +0.4 25,601 + -0.7 25,602 - +0.3 25,602 - +0.9 25,602 - -0.0 25,724 + Ac3H11_353 0.16 +0.4 25,725 - Ac3H11_353 0.16 -0.8 25,725 - Ac3H11_353 0.16 +1.4
Or see this region's nucleotide sequence