Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_339

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_338 and Ac3H11_339 are separated by 109 nucleotidesAc3H11_339 and Ac3H11_340 are separated by 151 nucleotides Ac3H11_338 - Glucarate dehydratase (EC 4.2.1.40), at 14,282 to 15,646 _338 Ac3H11_339 - Transcriptional regulator, PadR family, at 15,756 to 16,292 _339 Ac3H11_340 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 16,444 to 18,510 _340 Position (kb) 15 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 14.756 kb on + strand, within Ac3H11_338at 14.757 kb on - strand, within Ac3H11_338at 14.765 kb on + strand, within Ac3H11_338at 14.765 kb on + strand, within Ac3H11_338at 14.766 kb on - strand, within Ac3H11_338at 14.798 kb on + strand, within Ac3H11_338at 14.798 kb on + strand, within Ac3H11_338at 14.895 kb on - strand, within Ac3H11_338at 14.895 kb on - strand, within Ac3H11_338at 14.903 kb on + strand, within Ac3H11_338at 14.903 kb on + strand, within Ac3H11_338at 15.546 kb on - strandat 15.593 kb on + strandat 15.594 kb on - strandat 15.620 kb on - strandat 15.634 kb on + strandat 15.634 kb on + strandat 15.778 kb on - strandat 15.910 kb on + strand, within Ac3H11_339at 15.911 kb on - strand, within Ac3H11_339at 15.911 kb on - strand, within Ac3H11_339at 15.911 kb on - strand, within Ac3H11_339at 16.172 kb on - strand, within Ac3H11_339at 16.201 kb on + strand, within Ac3H11_339at 16.201 kb on + strand, within Ac3H11_339at 16.401 kb on + strandat 16.401 kb on + strandat 16.499 kb on - strandat 16.621 kb on + strandat 16.621 kb on + strandat 16.621 kb on + strandat 16.621 kb on + strandat 16.621 kb on + strandat 16.622 kb on - strandat 16.622 kb on - strandat 16.814 kb on - strand, within Ac3H11_340at 16.819 kb on + strand, within Ac3H11_340at 16.820 kb on - strand, within Ac3H11_340at 16.958 kb on - strand, within Ac3H11_340at 16.990 kb on + strand, within Ac3H11_340at 17.020 kb on - strand, within Ac3H11_340at 17.053 kb on + strand, within Ac3H11_340at 17.053 kb on + strand, within Ac3H11_340at 17.054 kb on - strand, within Ac3H11_340at 17.054 kb on - strand, within Ac3H11_340at 17.131 kb on + strand, within Ac3H11_340at 17.132 kb on - strand, within Ac3H11_340at 17.132 kb on - strand, within Ac3H11_340

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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14,756 + Ac3H11_338 0.35 -0.3
14,757 - Ac3H11_338 0.35 -0.9
14,765 + Ac3H11_338 0.35 -0.3
14,765 + Ac3H11_338 0.35 +0.2
14,766 - Ac3H11_338 0.35 -0.2
14,798 + Ac3H11_338 0.38 -0.6
14,798 + Ac3H11_338 0.38 +1.4
14,895 - Ac3H11_338 0.45 +0.3
14,895 - Ac3H11_338 0.45 +0.5
14,903 + Ac3H11_338 0.45 -1.4
14,903 + Ac3H11_338 0.45 +0.3
15,546 - -0.4
15,593 + +0.2
15,594 - -0.9
15,620 - +0.7
15,634 + -0.1
15,634 + -1.3
15,778 - -1.9
15,910 + Ac3H11_339 0.29 +0.6
15,911 - Ac3H11_339 0.29 +0.1
15,911 - Ac3H11_339 0.29 +0.5
15,911 - Ac3H11_339 0.29 +0.7
16,172 - Ac3H11_339 0.77 +2.4
16,201 + Ac3H11_339 0.83 +0.1
16,201 + Ac3H11_339 0.83 +0.3
16,401 + -0.3
16,401 + -1.0
16,499 - +1.4
16,621 + -0.4
16,621 + +1.1
16,621 + -0.1
16,621 + -1.7
16,621 + +1.3
16,622 - +0.2
16,622 - +0.3
16,814 - Ac3H11_340 0.18 -1.7
16,819 + Ac3H11_340 0.18 +0.4
16,820 - Ac3H11_340 0.18 -1.3
16,958 - Ac3H11_340 0.25 -0.7
16,990 + Ac3H11_340 0.26 +0.2
17,020 - Ac3H11_340 0.28 -2.8
17,053 + Ac3H11_340 0.29 +2.1
17,053 + Ac3H11_340 0.29 -0.3
17,054 - Ac3H11_340 0.30 -1.6
17,054 - Ac3H11_340 0.30 +1.4
17,131 + Ac3H11_340 0.33 +0.8
17,132 - Ac3H11_340 0.33 -1.4
17,132 - Ac3H11_340 0.33 -0.8

Or see this region's nucleotide sequence