Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_338 and Ac3H11_339 are separated by 109 nucleotides Ac3H11_339 and Ac3H11_340 are separated by 151 nucleotides
Ac3H11_338 - Glucarate dehydratase (EC 4.2.1.40), at 14,282 to 15,646
_338
Ac3H11_339 - Transcriptional regulator, PadR family, at 15,756 to 16,292
_339
Ac3H11_340 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 16,444 to 18,510
_340
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 14.756 kb on + strand, within Ac3H11_338 at 14.757 kb on - strand, within Ac3H11_338 at 14.765 kb on + strand, within Ac3H11_338 at 14.765 kb on + strand, within Ac3H11_338 at 14.766 kb on - strand, within Ac3H11_338 at 14.798 kb on + strand, within Ac3H11_338 at 14.798 kb on + strand, within Ac3H11_338 at 14.895 kb on - strand, within Ac3H11_338 at 14.895 kb on - strand, within Ac3H11_338 at 14.903 kb on + strand, within Ac3H11_338 at 14.903 kb on + strand, within Ac3H11_338 at 15.546 kb on - strand at 15.593 kb on + strand at 15.594 kb on - strand at 15.620 kb on - strand at 15.634 kb on + strand at 15.634 kb on + strand at 15.778 kb on - strand at 15.910 kb on + strand, within Ac3H11_339 at 15.911 kb on - strand, within Ac3H11_339 at 15.911 kb on - strand, within Ac3H11_339 at 15.911 kb on - strand, within Ac3H11_339 at 16.172 kb on - strand, within Ac3H11_339 at 16.201 kb on + strand, within Ac3H11_339 at 16.201 kb on + strand, within Ac3H11_339 at 16.401 kb on + strand at 16.401 kb on + strand at 16.499 kb on - strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.622 kb on - strand at 16.622 kb on - strand at 16.814 kb on - strand, within Ac3H11_340 at 16.819 kb on + strand, within Ac3H11_340 at 16.820 kb on - strand, within Ac3H11_340 at 16.958 kb on - strand, within Ac3H11_340 at 16.990 kb on + strand, within Ac3H11_340 at 17.020 kb on - strand, within Ac3H11_340 at 17.053 kb on + strand, within Ac3H11_340 at 17.053 kb on + strand, within Ac3H11_340 at 17.054 kb on - strand, within Ac3H11_340 at 17.054 kb on - strand, within Ac3H11_340 at 17.131 kb on + strand, within Ac3H11_340 at 17.132 kb on - strand, within Ac3H11_340 at 17.132 kb on - strand, within Ac3H11_340
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 14,756 + Ac3H11_338 0.35 -0.3 14,757 - Ac3H11_338 0.35 -0.9 14,765 + Ac3H11_338 0.35 -0.3 14,765 + Ac3H11_338 0.35 +0.2 14,766 - Ac3H11_338 0.35 -0.2 14,798 + Ac3H11_338 0.38 -0.6 14,798 + Ac3H11_338 0.38 +1.4 14,895 - Ac3H11_338 0.45 +0.3 14,895 - Ac3H11_338 0.45 +0.5 14,903 + Ac3H11_338 0.45 -1.4 14,903 + Ac3H11_338 0.45 +0.3 15,546 - -0.4 15,593 + +0.2 15,594 - -0.9 15,620 - +0.7 15,634 + -0.1 15,634 + -1.3 15,778 - -1.9 15,910 + Ac3H11_339 0.29 +0.6 15,911 - Ac3H11_339 0.29 +0.1 15,911 - Ac3H11_339 0.29 +0.5 15,911 - Ac3H11_339 0.29 +0.7 16,172 - Ac3H11_339 0.77 +2.4 16,201 + Ac3H11_339 0.83 +0.1 16,201 + Ac3H11_339 0.83 +0.3 16,401 + -0.3 16,401 + -1.0 16,499 - +1.4 16,621 + -0.4 16,621 + +1.1 16,621 + -0.1 16,621 + -1.7 16,621 + +1.3 16,622 - +0.2 16,622 - +0.3 16,814 - Ac3H11_340 0.18 -1.7 16,819 + Ac3H11_340 0.18 +0.4 16,820 - Ac3H11_340 0.18 -1.3 16,958 - Ac3H11_340 0.25 -0.7 16,990 + Ac3H11_340 0.26 +0.2 17,020 - Ac3H11_340 0.28 -2.8 17,053 + Ac3H11_340 0.29 +2.1 17,053 + Ac3H11_340 0.29 -0.3 17,054 - Ac3H11_340 0.30 -1.6 17,054 - Ac3H11_340 0.30 +1.4 17,131 + Ac3H11_340 0.33 +0.8 17,132 - Ac3H11_340 0.33 -1.4 17,132 - Ac3H11_340 0.33 -0.8
Or see this region's nucleotide sequence