Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_323

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_322 and Ac3H11_323 are separated by 129 nucleotidesAc3H11_323 and Ac3H11_324 are separated by 15 nucleotides Ac3H11_322 - Transcriptional regulatory protein, at 145,345 to 146,541 _322 Ac3H11_323 - hypothetical protein, at 146,671 to 146,787 _323 Ac3H11_324 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 146,803 to 149,469 _324 Position (kb) 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 145.675 kb on + strand, within Ac3H11_322at 145.741 kb on + strand, within Ac3H11_322at 145.741 kb on + strand, within Ac3H11_322at 145.741 kb on + strandat 145.741 kb on + strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.941 kb on - strand, within Ac3H11_322at 145.941 kb on - strand, within Ac3H11_322at 146.384 kb on - strand, within Ac3H11_322at 146.544 kb on + strandat 146.544 kb on + strandat 146.544 kb on + strandat 146.544 kb on + strandat 146.544 kb on + strandat 146.594 kb on + strandat 146.595 kb on - strandat 147.035 kb on - strandat 147.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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145,675 + Ac3H11_322 0.28 +0.7
145,741 + Ac3H11_322 0.33 +0.2
145,741 + Ac3H11_322 0.33 +0.3
145,741 + +0.6
145,741 + Ac3H11_322 0.33 -1.6
145,742 - Ac3H11_322 0.33 +2.1
145,742 - Ac3H11_322 0.33 +0.9
145,742 - Ac3H11_322 0.33 -0.8
145,742 - Ac3H11_322 0.33 -0.2
145,742 - Ac3H11_322 0.33 -2.4
145,742 - Ac3H11_322 0.33 -0.0
145,742 - Ac3H11_322 0.33 -0.0
145,742 - Ac3H11_322 0.33 -0.4
145,742 - Ac3H11_322 0.33 +0.2
145,742 - Ac3H11_322 0.33 +1.3
145,822 + Ac3H11_322 0.40 +0.9
145,822 + Ac3H11_322 0.40 -0.4
145,822 + Ac3H11_322 0.40 -0.7
145,940 + Ac3H11_322 0.50 -1.3
145,940 + Ac3H11_322 0.50 -0.9
145,940 + Ac3H11_322 0.50 -0.4
145,940 + Ac3H11_322 0.50 -1.5
145,941 - Ac3H11_322 0.50 +0.7
145,941 - Ac3H11_322 0.50 -0.4
146,384 - Ac3H11_322 0.87 -0.4
146,544 + -0.3
146,544 + -1.8
146,544 + -0.2
146,544 + +1.9
146,544 + +0.9
146,594 + +0.5
146,595 - -1.0
147,035 - +0.9
147,035 - -0.1

Or see this region's nucleotide sequence