Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3074 and Ac3H11_3075 are separated by 193 nucleotides Ac3H11_3075 and Ac3H11_3076 are separated by 55 nucleotides Ac3H11_3076 and Ac3H11_3077 are separated by 46 nucleotides Ac3H11_3077 and Ac3H11_3078 overlap by 9 nucleotides
Ac3H11_3074 - hypothetical protein, at 99,383 to 99,502
_3074
Ac3H11_3075 - hypothetical protein, at 99,696 to 99,809
_3075
Ac3H11_3076 - Antibiotic biosynthesis monooxygenase, at 99,865 to 100,164
_3076
Ac3H11_3077 - hypothetical protein, at 100,211 to 100,540
_3077
Ac3H11_3078 - ATP-dependent DNA helicase UvrD/PcrA, at 100,532 to 102,562
_3078
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.101 kb on + strand at 99.101 kb on + strand at 99.102 kb on - strand at 99.102 kb on - strand at 99.102 kb on - strand at 99.298 kb on + strand at 99.298 kb on + strand at 99.298 kb on + strand at 99.298 kb on + strand at 99.298 kb on + strand at 99.299 kb on - strand at 99.299 kb on - strand at 99.299 kb on - strand at 99.299 kb on - strand at 99.354 kb on + strand at 99.355 kb on - strand at 99.355 kb on - strand at 99.355 kb on - strand at 99.355 kb on - strand at 99.407 kb on + strand, within Ac3H11_3074 at 99.407 kb on + strand, within Ac3H11_3074 at 99.407 kb on + strand, within Ac3H11_3074 at 99.407 kb on + strand, within Ac3H11_3074 at 99.408 kb on - strand, within Ac3H11_3074 at 99.408 kb on - strand, within Ac3H11_3074 at 99.408 kb on - strand, within Ac3H11_3074 at 99.408 kb on - strand, within Ac3H11_3074 at 99.408 kb on - strand, within Ac3H11_3074 at 99.416 kb on + strand, within Ac3H11_3074 at 99.416 kb on + strand, within Ac3H11_3074 at 99.416 kb on + strand, within Ac3H11_3074 at 99.417 kb on - strand, within Ac3H11_3074 at 99.418 kb on + strand, within Ac3H11_3074 at 99.418 kb on + strand, within Ac3H11_3074 at 99.418 kb on + strand, within Ac3H11_3074 at 99.418 kb on + strand, within Ac3H11_3074 at 99.418 kb on + strand, within Ac3H11_3074 at 99.419 kb on - strand, within Ac3H11_3074 at 99.432 kb on - strand, within Ac3H11_3074 at 99.432 kb on - strand, within Ac3H11_3074 at 99.497 kb on + strand at 99.497 kb on + strand at 99.498 kb on - strand at 99.631 kb on + strand at 99.631 kb on + strand at 99.632 kb on - strand at 99.632 kb on - strand at 99.632 kb on - strand at 99.632 kb on - strand at 99.637 kb on + strand at 99.637 kb on + strand at 99.637 kb on + strand at 99.637 kb on + strand at 99.637 kb on + strand at 99.637 kb on + strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.667 kb on + strand at 99.668 kb on - strand at 99.668 kb on - strand at 99.668 kb on - strand at 99.668 kb on - strand at 99.668 kb on - strand at 99.668 kb on - strand at 99.688 kb on - strand at 99.688 kb on - strand at 99.688 kb on - strand at 99.749 kb on + strand, within Ac3H11_3075 at 99.750 kb on - strand, within Ac3H11_3075 at 99.759 kb on + strand, within Ac3H11_3075 at 99.759 kb on + strand, within Ac3H11_3075 at 99.760 kb on - strand, within Ac3H11_3075 at 99.760 kb on - strand, within Ac3H11_3075 at 99.760 kb on - strand, within Ac3H11_3075 at 99.903 kb on + strand, within Ac3H11_3076 at 99.903 kb on + strand, within Ac3H11_3076 at 100.135 kb on + strand at 100.135 kb on + strand at 100.135 kb on + strand at 100.135 kb on + strand at 100.135 kb on + strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.136 kb on - strand at 100.171 kb on + strand at 100.171 kb on + strand at 100.172 kb on - strand at 100.179 kb on + strand at 100.180 kb on - strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.212 kb on + strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.213 kb on - strand at 100.216 kb on + strand at 100.216 kb on + strand at 100.216 kb on + strand at 100.216 kb on + strand at 100.217 kb on - strand at 100.217 kb on - strand at 100.217 kb on - strand at 100.217 kb on - strand at 100.226 kb on + strand at 100.226 kb on + strand at 100.226 kb on + strand at 100.226 kb on + strand at 100.226 kb on + strand at 100.227 kb on - strand at 100.227 kb on - strand at 100.227 kb on - strand at 100.227 kb on - strand at 100.227 kb on - strand at 100.256 kb on - strand, within Ac3H11_3077 at 100.256 kb on - strand, within Ac3H11_3077 at 100.342 kb on + strand, within Ac3H11_3077 at 100.342 kb on + strand, within Ac3H11_3077 at 100.343 kb on - strand, within Ac3H11_3077 at 100.343 kb on - strand, within Ac3H11_3077 at 100.343 kb on - strand, within Ac3H11_3077 at 100.343 kb on - strand, within Ac3H11_3077 at 100.387 kb on - strand, within Ac3H11_3077 at 100.387 kb on - strand, within Ac3H11_3077 at 100.387 kb on - strand, within Ac3H11_3077 at 100.730 kb on + strand at 100.731 kb on - strand at 101.111 kb on + strand, within Ac3H11_3078 at 101.112 kb on - strand, within Ac3H11_3078 at 101.129 kb on + strand, within Ac3H11_3078 at 101.130 kb on - strand, within Ac3H11_3078
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 99,019 + -0.5 99,019 + +0.6 99,019 + -0.9 99,020 - +0.4 99,020 - -0.0 99,020 - -0.8 99,020 - +0.2 99,101 + +1.4 99,101 + +1.2 99,102 - +0.2 99,102 - +0.9 99,102 - -0.1 99,298 + -0.4 99,298 + +1.8 99,298 + +0.8 99,298 + -0.3 99,298 + -0.1 99,299 - +0.6 99,299 - +0.8 99,299 - -0.1 99,299 - +1.4 99,354 + -0.8 99,355 - -0.8 99,355 - -1.1 99,355 - -1.6 99,355 - +2.9 99,407 + Ac3H11_3074 0.20 -0.8 99,407 + Ac3H11_3074 0.20 -0.2 99,407 + Ac3H11_3074 0.20 +0.9 99,407 + Ac3H11_3074 0.20 -2.5 99,408 - Ac3H11_3074 0.21 -1.5 99,408 - Ac3H11_3074 0.21 -0.7 99,408 - Ac3H11_3074 0.21 -0.4 99,408 - Ac3H11_3074 0.21 -2.8 99,408 - Ac3H11_3074 0.21 +0.1 99,416 + Ac3H11_3074 0.28 -1.6 99,416 + Ac3H11_3074 0.28 -1.9 99,416 + Ac3H11_3074 0.28 -0.4 99,417 - Ac3H11_3074 0.28 +0.1 99,418 + Ac3H11_3074 0.29 -1.7 99,418 + Ac3H11_3074 0.29 -0.7 99,418 + Ac3H11_3074 0.29 -0.3 99,418 + Ac3H11_3074 0.29 -1.9 99,418 + Ac3H11_3074 0.29 -0.4 99,419 - Ac3H11_3074 0.30 +0.7 99,432 - Ac3H11_3074 0.41 +0.5 99,432 - Ac3H11_3074 0.41 -1.8 99,497 + +0.0 99,497 + +0.8 99,498 - +1.8 99,631 + +2.2 99,631 + -1.4 99,632 - +1.3 99,632 - +0.4 99,632 - +1.1 99,632 - +1.1 99,637 + +0.2 99,637 + +0.6 99,637 + +1.1 99,637 + +0.2 99,637 + +1.2 99,637 + +0.6 99,638 - +0.7 99,638 - +0.4 99,638 - +0.5 99,638 - +0.3 99,638 - +1.0 99,638 - -1.2 99,638 - +1.3 99,667 + -0.8 99,667 + +0.5 99,667 + -0.1 99,667 + -0.3 99,667 + +0.0 99,667 + +1.1 99,667 + +0.7 99,668 - -0.1 99,668 - +0.2 99,668 - -0.0 99,668 - +2.8 99,668 - +2.0 99,668 - +1.2 99,688 - +0.0 99,688 - +0.4 99,688 - -1.6 99,749 + Ac3H11_3075 0.46 +8.0 99,750 - Ac3H11_3075 0.47 +0.2 99,759 + Ac3H11_3075 0.55 -1.0 99,759 + Ac3H11_3075 0.55 -0.2 99,760 - Ac3H11_3075 0.56 -1.0 99,760 - Ac3H11_3075 0.56 +0.9 99,760 - Ac3H11_3075 0.56 +1.3 99,903 + Ac3H11_3076 0.13 +0.5 99,903 + Ac3H11_3076 0.13 -0.4 100,135 + +0.3 100,135 + +0.3 100,135 + +1.4 100,135 + +0.3 100,135 + -0.5 100,136 - +0.6 100,136 - +0.8 100,136 - -0.4 100,136 - -1.1 100,136 - +0.2 100,136 - -3.1 100,136 - +0.4 100,136 - -0.4 100,136 - -0.1 100,136 - +0.3 100,136 - +0.4 100,171 + -0.1 100,171 + -0.1 100,172 - -0.1 100,179 + +0.5 100,180 - -1.8 100,212 + +0.7 100,212 + +0.4 100,212 + -0.1 100,212 + -1.3 100,212 + +0.6 100,212 + +0.1 100,212 + -3.2 100,212 + +0.2 100,212 + +0.1 100,212 + +1.7 100,212 + +1.5 100,212 + +0.8 100,212 + +0.0 100,212 + -0.1 100,212 + +0.3 100,213 - -1.5 100,213 - -0.2 100,213 - +0.6 100,213 - +0.7 100,213 - -0.8 100,213 - +0.0 100,213 - +0.4 100,213 - +2.8 100,213 - +0.4 100,213 - +0.2 100,213 - -1.3 100,213 - +0.5 100,213 - -0.8 100,213 - -0.2 100,216 + -0.7 100,216 + +0.8 100,216 + -2.1 100,216 + -1.7 100,217 - +1.3 100,217 - +1.0 100,217 - -2.7 100,217 - -1.0 100,226 + -0.5 100,226 + -0.1 100,226 + -1.3 100,226 + -1.6 100,226 + -1.3 100,227 - +0.8 100,227 - +0.2 100,227 - -1.3 100,227 - -1.6 100,227 - +0.4 100,256 - Ac3H11_3077 0.14 +0.6 100,256 - Ac3H11_3077 0.14 -0.4 100,342 + Ac3H11_3077 0.40 +0.9 100,342 + Ac3H11_3077 0.40 -0.7 100,343 - Ac3H11_3077 0.40 +1.8 100,343 - Ac3H11_3077 0.40 -2.1 100,343 - Ac3H11_3077 0.40 +0.8 100,343 - Ac3H11_3077 0.40 +0.1 100,387 - Ac3H11_3077 0.53 +0.7 100,387 - Ac3H11_3077 0.53 -0.0 100,387 - Ac3H11_3077 0.53 +2.2 100,730 + -0.4 100,731 - -0.8 101,111 + Ac3H11_3078 0.29 +0.5 101,112 - Ac3H11_3078 0.29 -1.1 101,129 + Ac3H11_3078 0.29 +0.6 101,130 - Ac3H11_3078 0.29 +0.4
Or see this region's nucleotide sequence