Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_306

Experiment: phage 93.2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_304 and Ac3H11_305 overlap by 4 nucleotidesAc3H11_305 and Ac3H11_306 are separated by 83 nucleotidesAc3H11_306 and Ac3H11_307 are separated by 12 nucleotidesAc3H11_307 and Ac3H11_308 are separated by 6 nucleotides Ac3H11_304 - putative membrane protein, at 125,772 to 126,677 _304 Ac3H11_305 - Acyl-CoA thioesterase I, at 126,674 to 127,360 _305 Ac3H11_306 - Epoxyqueuosine (oQ) reductase QueG, at 127,444 to 128,490 _306 Ac3H11_307 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 128,503 to 129,021 _307 Ac3H11_308 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 129,028 to 130,491 _308 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 126.564 kb on + strand, within Ac3H11_304at 126.564 kb on + strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.588 kb on + strandat 126.589 kb on - strandat 126.589 kb on - strandat 126.589 kb on - strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.900 kb on + strand, within Ac3H11_305at 126.900 kb on + strand, within Ac3H11_305at 126.900 kb on + strand, within Ac3H11_305at 127.023 kb on + strand, within Ac3H11_305at 127.023 kb on + strand, within Ac3H11_305at 127.023 kb on + strand, within Ac3H11_305at 127.023 kb on + strand, within Ac3H11_305at 127.024 kb on - strand, within Ac3H11_305at 127.024 kb on - strand, within Ac3H11_305at 127.187 kb on + strand, within Ac3H11_305at 127.187 kb on + strand, within Ac3H11_305at 127.188 kb on - strand, within Ac3H11_305at 127.188 kb on - strand, within Ac3H11_305at 127.299 kb on - strandat 127.358 kb on + strandat 127.358 kb on + strandat 127.358 kb on + strandat 127.358 kb on + strandat 127.359 kb on - strandat 127.359 kb on - strandat 127.362 kb on - strandat 127.375 kb on + strandat 127.375 kb on + strandat 127.375 kb on + strandat 127.375 kb on + strandat 127.375 kb on + strandat 127.376 kb on - strandat 127.376 kb on - strandat 127.448 kb on - strandat 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.535 kb on - strandat 128.535 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
remove
126,564 + Ac3H11_304 0.87 -1.3
126,564 + Ac3H11_304 0.87 -0.1
126,565 - Ac3H11_304 0.88 -0.1
126,565 - Ac3H11_304 0.88 +0.3
126,565 - Ac3H11_304 0.88 -1.8
126,565 - Ac3H11_304 0.88 +1.4
126,588 + +2.6
126,589 - -0.4
126,589 - -1.0
126,589 - -0.7
126,600 + +0.2
126,600 + -0.2
126,600 + -2.3
126,600 + -0.6
126,600 + +1.3
126,600 + -0.1
126,600 + -0.2
126,601 - -0.1
126,601 - +0.5
126,601 - -0.5
126,601 - +0.1
126,601 - +0.7
126,601 - -2.2
126,601 - -1.3
126,601 - -1.4
126,601 - -2.3
126,601 - -1.1
126,900 + Ac3H11_305 0.33 +1.2
126,900 + Ac3H11_305 0.33 +0.1
126,900 + Ac3H11_305 0.33 -1.5
127,023 + Ac3H11_305 0.51 +0.6
127,023 + Ac3H11_305 0.51 -1.0
127,023 + Ac3H11_305 0.51 -1.3
127,023 + Ac3H11_305 0.51 -1.1
127,024 - Ac3H11_305 0.51 +0.3
127,024 - Ac3H11_305 0.51 -0.7
127,187 + Ac3H11_305 0.75 -1.0
127,187 + Ac3H11_305 0.75 -0.8
127,188 - Ac3H11_305 0.75 -1.3
127,188 - Ac3H11_305 0.75 -2.8
127,299 - +0.2
127,358 + -1.9
127,358 + +1.3
127,358 + -0.1
127,358 + +0.6
127,359 - +0.9
127,359 - -0.4
127,362 - -0.1
127,375 + -1.1
127,375 + -2.6
127,375 + -0.1
127,375 + -0.4
127,375 + +0.6
127,376 - -1.8
127,376 - -1.3
127,448 - -2.1
127,769 + Ac3H11_306 0.31 +0.4
127,769 + Ac3H11_306 0.31 +0.2
127,769 + Ac3H11_306 0.31 +0.3
127,769 + Ac3H11_306 0.31 +2.9
127,769 + Ac3H11_306 0.31 +0.3
127,769 + Ac3H11_306 0.31 -1.1
127,769 + Ac3H11_306 0.31 +0.1
127,770 - Ac3H11_306 0.31 -0.4
127,770 - Ac3H11_306 0.31 -1.4
127,770 - Ac3H11_306 0.31 -1.3
127,770 - Ac3H11_306 0.31 +0.3
127,835 + Ac3H11_306 0.37 +0.9
127,835 + Ac3H11_306 0.37 -0.1
127,835 + Ac3H11_306 0.37 -1.1
127,835 + Ac3H11_306 0.37 -2.5
127,836 - Ac3H11_306 0.37 -0.5
127,836 - Ac3H11_306 0.37 +0.3
127,836 - Ac3H11_306 0.37 -0.5
127,836 - Ac3H11_306 0.37 -0.7
127,967 + Ac3H11_306 0.50 +0.9
127,967 + Ac3H11_306 0.50 +0.9
127,967 + Ac3H11_306 0.50 -0.7
127,967 + Ac3H11_306 0.50 +0.4
127,967 + Ac3H11_306 0.50 -0.3
127,967 + Ac3H11_306 0.50 -0.2
127,967 + Ac3H11_306 0.50 +0.3
127,967 + Ac3H11_306 0.50 -0.5
127,967 + Ac3H11_306 0.50 -0.8
127,967 + Ac3H11_306 0.50 -0.7
127,967 + Ac3H11_306 0.50 -0.7
127,967 + Ac3H11_306 0.50 -0.3
127,967 + Ac3H11_306 0.50 -0.4
127,968 - Ac3H11_306 0.50 -0.8
127,968 - Ac3H11_306 0.50 -1.1
127,968 - Ac3H11_306 0.50 -1.3
127,968 - Ac3H11_306 0.50 -0.1
127,968 - Ac3H11_306 0.50 +0.3
127,968 - Ac3H11_306 0.50 -0.6
127,968 - Ac3H11_306 0.50 +0.3
127,968 - Ac3H11_306 0.50 -0.5
127,968 - Ac3H11_306 0.50 +0.2
127,968 - Ac3H11_306 0.50 -1.0
127,968 - Ac3H11_306 0.50 +1.1
127,968 - Ac3H11_306 0.50 -0.8
127,968 - Ac3H11_306 0.50 +0.3
127,968 - Ac3H11_306 0.50 -0.6
127,968 - Ac3H11_306 0.50 -1.7
127,968 - Ac3H11_306 0.50 +0.7
128,171 + Ac3H11_306 0.69 -2.3
128,171 + Ac3H11_306 0.69 -1.1
128,171 + Ac3H11_306 0.69 +0.9
128,171 + Ac3H11_306 0.69 +0.9
128,171 + Ac3H11_306 0.69 -1.9
128,172 - Ac3H11_306 0.70 -0.3
128,172 - Ac3H11_306 0.70 -1.7
128,189 + Ac3H11_306 0.71 -1.5
128,189 + Ac3H11_306 0.71 +0.9
128,285 + Ac3H11_306 0.80 -0.7
128,285 + Ac3H11_306 0.80 -0.4
128,285 + Ac3H11_306 0.80 +0.1
128,285 + Ac3H11_306 0.80 +0.3
128,285 + Ac3H11_306 0.80 +0.1
128,286 - Ac3H11_306 0.80 +1.7
128,286 - Ac3H11_306 0.80 +1.0
128,369 + Ac3H11_306 0.88 +0.9
128,369 + Ac3H11_306 0.88 -1.5
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 -2.0
128,369 + Ac3H11_306 0.88 -0.2
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 +1.3
128,369 + Ac3H11_306 0.88 -0.8
128,369 + Ac3H11_306 0.88 -0.7
128,369 + Ac3H11_306 0.88 +0.3
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 +0.1
128,369 + Ac3H11_306 0.88 +1.3
128,369 + Ac3H11_306 0.88 +0.3
128,369 + Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 -1.8
128,370 - Ac3H11_306 0.88 +0.4
128,370 - Ac3H11_306 0.88 -0.9
128,370 - Ac3H11_306 0.88 +1.4
128,370 - Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 -0.8
128,370 - Ac3H11_306 0.88 +1.4
128,370 - Ac3H11_306 0.88 -2.3
128,370 - Ac3H11_306 0.88 -0.5
128,370 - Ac3H11_306 0.88 -1.0
128,370 - Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 +1.2
128,370 - Ac3H11_306 0.88 -0.3
128,370 - Ac3H11_306 0.88 +0.8
128,370 - Ac3H11_306 0.88 -1.1
128,370 - Ac3H11_306 0.88 -0.8
128,370 - Ac3H11_306 0.88 -0.3
128,370 - Ac3H11_306 0.88 +0.1
128,370 - Ac3H11_306 0.88 +0.2
128,370 - Ac3H11_306 0.88 -1.8
128,370 - Ac3H11_306 0.88 +0.1
128,370 - Ac3H11_306 0.88 -0.4
128,370 - Ac3H11_306 0.88 +1.2
128,370 - Ac3H11_306 0.88 +0.0
128,370 - Ac3H11_306 0.88 -0.7
128,370 - Ac3H11_306 0.88 -0.5
128,370 - Ac3H11_306 0.88 +1.2
128,370 - Ac3H11_306 0.88 -0.4
128,370 - Ac3H11_306 0.88 +0.7
128,370 - Ac3H11_306 0.88 -1.8
128,370 - Ac3H11_306 0.88 -0.3
128,370 - Ac3H11_306 0.88 +0.5
128,370 - Ac3H11_306 0.88 -1.4
128,370 - Ac3H11_306 0.88 -1.8
128,370 - Ac3H11_306 0.88 -0.4
128,535 - +0.9
128,535 - -0.1

Or see this region's nucleotide sequence