Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2372 and Ac3H11_2373 are separated by 205 nucleotides Ac3H11_2373 and Ac3H11_2374 overlap by 4 nucleotides Ac3H11_2374 and Ac3H11_2375 are separated by 11 nucleotides Ac3H11_2375 and Ac3H11_2376 are separated by 106 nucleotides
Ac3H11_2372 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 634,283 to 636,163
_2372
Ac3H11_2373 - hypothetical protein, at 636,369 to 636,752
_2373
Ac3H11_2374 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 636,749 to 636,967
_2374
Ac3H11_2375 - Glutathione S-transferase (EC 2.5.1.18), at 636,979 to 637,596
_2375
Ac3H11_2376 - Transcriptional regulator, LysR family, at 637,703 to 638,614
_2376
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 636.022 kb on - strand at 636.022 kb on - strand at 636.111 kb on + strand at 636.112 kb on - strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.589 kb on - strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.686 kb on - strand, within Ac3H11_2373 at 636.700 kb on + strand, within Ac3H11_2373 at 636.701 kb on - strand, within Ac3H11_2373 at 636.960 kb on + strand at 636.960 kb on + strand at 636.960 kb on + strand at 636.960 kb on + strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 637.085 kb on - strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.154 kb on + strand, within Ac3H11_2375 at 637.155 kb on - strand, within Ac3H11_2375 at 637.155 kb on - strand, within Ac3H11_2375 at 637.199 kb on + strand, within Ac3H11_2375 at 637.199 kb on + strand, within Ac3H11_2375 at 637.199 kb on + strand, within Ac3H11_2375 at 637.200 kb on - strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.237 kb on + strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.238 kb on - strand, within Ac3H11_2375 at 637.289 kb on + strand, within Ac3H11_2375 at 637.289 kb on + strand, within Ac3H11_2375 at 637.289 kb on + strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.290 kb on - strand, within Ac3H11_2375 at 637.373 kb on + strand, within Ac3H11_2375 at 637.373 kb on + strand, within Ac3H11_2375 at 637.373 kb on + strand, within Ac3H11_2375 at 637.373 kb on + strand, within Ac3H11_2375 at 637.373 kb on + strand, within Ac3H11_2375 at 637.374 kb on - strand, within Ac3H11_2375 at 637.374 kb on - strand, within Ac3H11_2375 at 637.374 kb on - strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.457 kb on + strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.458 kb on - strand, within Ac3H11_2375 at 637.571 kb on + strand at 637.571 kb on + strand at 637.571 kb on + strand at 637.571 kb on + strand at 637.571 kb on + strand at 637.572 kb on - strand at 637.572 kb on - strand at 637.572 kb on - strand at 637.572 kb on - strand at 637.572 kb on - strand at 637.572 kb on - strand at 637.574 kb on + strand at 637.574 kb on + strand at 637.574 kb on + strand at 637.574 kb on + strand at 637.575 kb on - strand at 637.575 kb on - strand at 637.575 kb on - strand at 637.575 kb on - strand at 637.575 kb on - strand at 637.575 kb on - strand at 637.584 kb on + strand at 637.584 kb on + strand at 637.584 kb on + strand at 637.584 kb on + strand at 637.585 kb on - strand at 637.585 kb on - strand at 637.585 kb on - strand at 637.585 kb on - strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.609 kb on + strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.610 kb on - strand at 637.638 kb on + strand at 637.659 kb on + strand at 637.660 kb on - strand at 637.660 kb on - strand at 637.669 kb on + strand at 637.687 kb on + strand at 637.688 kb on - strand at 637.693 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.725 kb on + strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.726 kb on - strand at 637.913 kb on + strand, within Ac3H11_2376 at 637.914 kb on - strand, within Ac3H11_2376 at 637.916 kb on + strand, within Ac3H11_2376 at 637.916 kb on + strand, within Ac3H11_2376 at 637.916 kb on + strand, within Ac3H11_2376 at 637.916 kb on + strand, within Ac3H11_2376 at 637.916 kb on + strand, within Ac3H11_2376 at 637.917 kb on - strand, within Ac3H11_2376 at 637.917 kb on - strand, within Ac3H11_2376 at 637.917 kb on - strand, within Ac3H11_2376 at 637.917 kb on - strand, within Ac3H11_2376 at 638.024 kb on + strand, within Ac3H11_2376 at 638.024 kb on + strand, within Ac3H11_2376 at 638.025 kb on - strand, within Ac3H11_2376 at 638.073 kb on - strand, within Ac3H11_2376 at 638.231 kb on + strand, within Ac3H11_2376 at 638.231 kb on + strand, within Ac3H11_2376 at 638.447 kb on + strand, within Ac3H11_2376 at 638.447 kb on + strand, within Ac3H11_2376 at 638.448 kb on - strand, within Ac3H11_2376 at 638.541 kb on - strand at 638.589 kb on - strand at 638.589 kb on - strand at 638.589 kb on - strand at 638.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 636,022 - -0.2 636,022 - -0.7 636,111 + +0.6 636,112 - +0.9 636,207 + -3.1 636,207 + -0.8 636,207 + +0.4 636,207 + +0.7 636,207 + +0.2 636,207 + -0.8 636,208 - +0.3 636,208 - +1.0 636,208 - +1.7 636,208 - -0.3 636,208 - +0.7 636,208 - +0.9 636,210 + -1.2 636,210 + -0.1 636,210 + +0.7 636,210 + -1.1 636,210 + +0.3 636,210 + -0.7 636,210 + -2.6 636,210 + -0.2 636,211 - -0.4 636,211 - -0.4 636,211 - -0.6 636,211 - +1.7 636,211 - +0.6 636,211 - -0.4 636,211 - +0.8 636,211 - -0.9 636,211 - +1.2 636,211 - -1.4 636,211 - -0.3 636,211 - -0.6 636,211 - +1.1 636,211 - -0.1 636,211 - -0.4 636,211 - +2.7 636,211 - +0.7 636,211 - -0.7 636,385 + -1.3 636,385 + +0.3 636,385 + -0.2 636,385 + -1.7 636,385 + +0.6 636,385 + -1.0 636,386 - +1.5 636,386 - -0.5 636,386 - +0.3 636,386 - -0.9 636,587 - Ac3H11_2373 0.57 -1.8 636,587 - Ac3H11_2373 0.57 -0.3 636,587 - Ac3H11_2373 0.57 +0.2 636,587 - Ac3H11_2373 0.57 -1.6 636,587 - Ac3H11_2373 0.57 +0.2 636,587 - Ac3H11_2373 0.57 +1.7 636,587 - Ac3H11_2373 0.57 -0.3 636,587 - Ac3H11_2373 0.57 +3.7 636,589 - Ac3H11_2373 0.57 +0.4 636,634 + Ac3H11_2373 0.69 +0.6 636,634 + Ac3H11_2373 0.69 -0.8 636,634 + Ac3H11_2373 0.69 +0.9 636,635 - Ac3H11_2373 0.69 +1.5 636,635 - Ac3H11_2373 0.69 +0.2 636,635 - Ac3H11_2373 0.69 -1.3 636,635 - Ac3H11_2373 0.69 -0.3 636,685 + Ac3H11_2373 0.82 -1.7 636,685 + Ac3H11_2373 0.82 -1.0 636,685 + Ac3H11_2373 0.82 -0.8 636,685 + Ac3H11_2373 0.82 -0.4 636,686 - Ac3H11_2373 0.83 +0.1 636,700 + Ac3H11_2373 0.86 +0.8 636,701 - Ac3H11_2373 0.86 -0.7 636,960 + +4.4 636,960 + -0.8 636,960 + -0.6 636,960 + +0.7 636,961 - -0.4 636,961 - -0.3 636,961 - +0.2 636,961 - -0.5 636,961 - -1.3 636,961 - +0.2 636,961 - -1.7 636,961 - -0.7 636,961 - -1.8 637,085 - Ac3H11_2375 0.17 -1.2 637,118 + Ac3H11_2375 0.22 +0.4 637,118 + Ac3H11_2375 0.22 -0.5 637,118 + Ac3H11_2375 0.22 -1.6 637,119 - Ac3H11_2375 0.23 -2.0 637,119 - Ac3H11_2375 0.23 -1.5 637,119 - Ac3H11_2375 0.23 -0.7 637,119 - Ac3H11_2375 0.23 +2.7 637,119 - Ac3H11_2375 0.23 +0.1 637,154 + Ac3H11_2375 0.28 +0.7 637,155 - Ac3H11_2375 0.28 -0.6 637,155 - Ac3H11_2375 0.28 -1.3 637,199 + Ac3H11_2375 0.36 -0.3 637,199 + Ac3H11_2375 0.36 -0.0 637,199 + Ac3H11_2375 0.36 -0.3 637,200 - Ac3H11_2375 0.36 -0.5 637,237 + Ac3H11_2375 0.42 -2.3 637,237 + Ac3H11_2375 0.42 -0.3 637,237 + Ac3H11_2375 0.42 -2.1 637,237 + Ac3H11_2375 0.42 -0.8 637,237 + Ac3H11_2375 0.42 -0.5 637,237 + Ac3H11_2375 0.42 +0.6 637,237 + Ac3H11_2375 0.42 +0.0 637,237 + Ac3H11_2375 0.42 -1.5 637,237 + Ac3H11_2375 0.42 -2.1 637,237 + Ac3H11_2375 0.42 -0.2 637,238 - Ac3H11_2375 0.42 -1.2 637,238 - Ac3H11_2375 0.42 +0.3 637,238 - Ac3H11_2375 0.42 +1.4 637,238 - Ac3H11_2375 0.42 -0.6 637,238 - Ac3H11_2375 0.42 +0.1 637,238 - Ac3H11_2375 0.42 -1.6 637,238 - Ac3H11_2375 0.42 +0.4 637,238 - Ac3H11_2375 0.42 -1.2 637,238 - Ac3H11_2375 0.42 -0.4 637,238 - Ac3H11_2375 0.42 +0.7 637,238 - Ac3H11_2375 0.42 -2.3 637,238 - Ac3H11_2375 0.42 -1.1 637,289 + Ac3H11_2375 0.50 -0.6 637,289 + Ac3H11_2375 0.50 -3.1 637,289 + Ac3H11_2375 0.50 +1.2 637,290 - Ac3H11_2375 0.50 -1.9 637,290 - Ac3H11_2375 0.50 -1.1 637,290 - Ac3H11_2375 0.50 +0.7 637,290 - Ac3H11_2375 0.50 -0.6 637,290 - Ac3H11_2375 0.50 -0.8 637,290 - Ac3H11_2375 0.50 +0.3 637,290 - Ac3H11_2375 0.50 +0.2 637,290 - Ac3H11_2375 0.50 -0.2 637,373 + Ac3H11_2375 0.64 -0.8 637,373 + Ac3H11_2375 0.64 -2.2 637,373 + Ac3H11_2375 0.64 +0.0 637,373 + Ac3H11_2375 0.64 -2.2 637,373 + Ac3H11_2375 0.64 +0.4 637,374 - Ac3H11_2375 0.64 -2.4 637,374 - Ac3H11_2375 0.64 -1.9 637,374 - Ac3H11_2375 0.64 -0.2 637,457 + Ac3H11_2375 0.77 -0.8 637,457 + Ac3H11_2375 0.77 -0.3 637,457 + Ac3H11_2375 0.77 +0.2 637,457 + Ac3H11_2375 0.77 -3.5 637,457 + Ac3H11_2375 0.77 -0.5 637,457 + Ac3H11_2375 0.77 -1.4 637,457 + Ac3H11_2375 0.77 +1.2 637,457 + Ac3H11_2375 0.77 -1.2 637,457 + Ac3H11_2375 0.77 +0.5 637,457 + Ac3H11_2375 0.77 +0.5 637,457 + Ac3H11_2375 0.77 -0.6 637,457 + Ac3H11_2375 0.77 +0.1 637,457 + Ac3H11_2375 0.77 -0.2 637,458 - Ac3H11_2375 0.78 +0.7 637,458 - Ac3H11_2375 0.78 +0.1 637,458 - Ac3H11_2375 0.78 -0.4 637,458 - Ac3H11_2375 0.78 +1.3 637,458 - Ac3H11_2375 0.78 +0.5 637,458 - Ac3H11_2375 0.78 -0.1 637,458 - Ac3H11_2375 0.78 +0.4 637,458 - Ac3H11_2375 0.78 +2.4 637,458 - Ac3H11_2375 0.78 -0.3 637,458 - Ac3H11_2375 0.78 -3.0 637,458 - Ac3H11_2375 0.78 -0.9 637,571 + +0.8 637,571 + -0.1 637,571 + +0.0 637,571 + +0.9 637,571 + +0.5 637,572 - +1.7 637,572 - -0.8 637,572 - -0.8 637,572 - -1.1 637,572 - -1.4 637,572 - -1.0 637,574 + +2.6 637,574 + +0.9 637,574 + +1.2 637,574 + +0.3 637,575 - -1.0 637,575 - -3.2 637,575 - +0.6 637,575 - -0.8 637,575 - +0.7 637,575 - -0.1 637,584 + -0.1 637,584 + -0.7 637,584 + +0.0 637,584 + +0.7 637,585 - +0.1 637,585 - +0.4 637,585 - +0.7 637,585 - -1.0 637,609 + -0.3 637,609 + +1.5 637,609 + +0.6 637,609 + -2.1 637,609 + -0.7 637,609 + -1.2 637,609 + +0.7 637,609 + -2.5 637,609 + +0.2 637,609 + -1.1 637,609 + +4.2 637,609 + -0.8 637,610 - -1.3 637,610 - -2.0 637,610 - -0.7 637,610 - +0.4 637,610 - -0.8 637,610 - -0.3 637,610 - +0.3 637,610 - +0.7 637,610 - +2.3 637,610 - -0.3 637,610 - +0.4 637,610 - -2.2 637,610 - -1.4 637,610 - +1.3 637,610 - -0.0 637,610 - +0.1 637,610 - +1.2 637,610 - +0.0 637,610 - +0.9 637,638 + -2.4 637,659 + +0.2 637,660 - +0.3 637,660 - -0.3 637,669 + -0.4 637,687 + -0.1 637,688 - +1.4 637,693 + -0.1 637,725 + -1.4 637,725 + +0.2 637,725 + -3.1 637,725 + -0.3 637,725 + -1.7 637,725 + +0.1 637,725 + -0.8 637,725 + -0.4 637,725 + +0.6 637,725 + -0.8 637,725 + -0.8 637,725 + +0.1 637,725 + +0.1 637,725 + +0.8 637,725 + +0.7 637,725 + +0.2 637,726 - -1.4 637,726 - -0.2 637,726 - +0.5 637,726 - -0.3 637,726 - -0.3 637,726 - +0.7 637,726 - -0.6 637,726 - -0.1 637,726 - -1.5 637,726 - -1.9 637,726 - -1.0 637,913 + Ac3H11_2376 0.23 +1.3 637,914 - Ac3H11_2376 0.23 +1.7 637,916 + Ac3H11_2376 0.23 +0.1 637,916 + Ac3H11_2376 0.23 -0.7 637,916 + Ac3H11_2376 0.23 -0.3 637,916 + Ac3H11_2376 0.23 +0.5 637,916 + Ac3H11_2376 0.23 +0.0 637,917 - Ac3H11_2376 0.23 -0.5 637,917 - Ac3H11_2376 0.23 -0.1 637,917 - Ac3H11_2376 0.23 -1.8 637,917 - Ac3H11_2376 0.23 +0.3 638,024 + Ac3H11_2376 0.35 -0.3 638,024 + Ac3H11_2376 0.35 -0.3 638,025 - Ac3H11_2376 0.35 -0.9 638,073 - Ac3H11_2376 0.41 +0.5 638,231 + Ac3H11_2376 0.58 +0.3 638,231 + Ac3H11_2376 0.58 -0.4 638,447 + Ac3H11_2376 0.82 +0.2 638,447 + Ac3H11_2376 0.82 +1.0 638,448 - Ac3H11_2376 0.82 -2.4 638,541 - -0.1 638,589 - -1.0 638,589 - -0.2 638,589 - -1.8 638,589 - +1.7
Or see this region's nucleotide sequence