Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_235

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_234 and Ac3H11_235 are separated by 451 nucleotidesAc3H11_235 and Ac3H11_236 overlap by 4 nucleotides Ac3H11_234 - Bacterioferritin, at 49,336 to 49,812 _234 Ac3H11_235 - FIG024006: iron uptake protein, at 50,264 to 50,572 _235 Ac3H11_236 - FIG138928: iron-regulated membrane protein, at 50,569 to 52,428 _236 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.310 kb on + strandat 49.311 kb on - strandat 49.311 kb on - strandat 49.380 kb on + strandat 49.380 kb on + strandat 49.380 kb on + strandat 49.381 kb on - strandat 49.381 kb on - strandat 49.381 kb on - strandat 49.381 kb on - strandat 49.408 kb on + strand, within Ac3H11_234at 49.409 kb on - strand, within Ac3H11_234at 49.420 kb on + strand, within Ac3H11_234at 49.420 kb on + strand, within Ac3H11_234at 49.468 kb on + strand, within Ac3H11_234at 49.468 kb on + strand, within Ac3H11_234at 49.469 kb on - strand, within Ac3H11_234at 49.675 kb on + strand, within Ac3H11_234at 49.676 kb on - strand, within Ac3H11_234at 49.780 kb on + strandat 49.780 kb on + strandat 49.780 kb on + strandat 49.781 kb on - strandat 49.781 kb on - strandat 50.038 kb on + strandat 50.038 kb on + strandat 50.038 kb on + strandat 50.039 kb on - strandat 50.060 kb on + strandat 50.061 kb on - strandat 50.444 kb on + strand, within Ac3H11_235at 50.444 kb on + strand, within Ac3H11_235at 50.444 kb on + strand, within Ac3H11_235at 50.444 kb on + strand, within Ac3H11_235at 50.444 kb on + strand, within Ac3H11_235at 50.444 kb on + strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.445 kb on - strand, within Ac3H11_235at 50.471 kb on + strand, within Ac3H11_235at 50.472 kb on - strand, within Ac3H11_235at 51.322 kb on + strand, within Ac3H11_236at 51.322 kb on + strand, within Ac3H11_236at 51.322 kb on + strand, within Ac3H11_236at 51.323 kb on - strand, within Ac3H11_236at 51.367 kb on + strand, within Ac3H11_236at 51.368 kb on - strand, within Ac3H11_236at 51.368 kb on - strand, within Ac3H11_236at 51.368 kb on - strand, within Ac3H11_236at 51.368 kb on - strand, within Ac3H11_236at 51.394 kb on + strand, within Ac3H11_236at 51.394 kb on + strand, within Ac3H11_236at 51.395 kb on - strand, within Ac3H11_236at 51.428 kb on - strand, within Ac3H11_236at 51.428 kb on - strand, within Ac3H11_236at 51.428 kb on - strand, within Ac3H11_236

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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49,310 + -1.1
49,311 - +1.5
49,311 - -2.0
49,380 + -0.8
49,380 + +1.4
49,380 + +3.0
49,381 - +0.8
49,381 - +0.7
49,381 - +0.7
49,381 - -1.4
49,408 + Ac3H11_234 0.15 +0.3
49,409 - Ac3H11_234 0.15 -1.9
49,420 + Ac3H11_234 0.18 -0.7
49,420 + Ac3H11_234 0.18 -1.6
49,468 + Ac3H11_234 0.28 -0.7
49,468 + Ac3H11_234 0.28 -0.8
49,469 - Ac3H11_234 0.28 -2.4
49,675 + Ac3H11_234 0.71 -0.9
49,676 - Ac3H11_234 0.71 -0.7
49,780 + -2.0
49,780 + +0.7
49,780 + -0.1
49,781 - -2.3
49,781 - -2.6
50,038 + +0.2
50,038 + +0.5
50,038 + +0.2
50,039 - +1.5
50,060 + -0.4
50,061 - -0.6
50,444 + Ac3H11_235 0.58 +0.1
50,444 + Ac3H11_235 0.58 +1.4
50,444 + Ac3H11_235 0.58 -0.4
50,444 + Ac3H11_235 0.58 -0.9
50,444 + Ac3H11_235 0.58 +0.4
50,444 + Ac3H11_235 0.58 +0.3
50,445 - Ac3H11_235 0.59 -0.3
50,445 - Ac3H11_235 0.59 +1.0
50,445 - Ac3H11_235 0.59 -0.5
50,445 - Ac3H11_235 0.59 -1.7
50,445 - Ac3H11_235 0.59 -0.4
50,445 - Ac3H11_235 0.59 -1.1
50,471 + Ac3H11_235 0.67 +0.5
50,472 - Ac3H11_235 0.67 -0.1
51,322 + Ac3H11_236 0.40 -0.8
51,322 + Ac3H11_236 0.40 +0.5
51,322 + Ac3H11_236 0.40 +3.2
51,323 - Ac3H11_236 0.41 +1.2
51,367 + Ac3H11_236 0.43 +0.4
51,368 - Ac3H11_236 0.43 +0.3
51,368 - Ac3H11_236 0.43 +0.3
51,368 - Ac3H11_236 0.43 -0.8
51,368 - Ac3H11_236 0.43 -1.0
51,394 + Ac3H11_236 0.44 -0.4
51,394 + Ac3H11_236 0.44 -0.6
51,395 - Ac3H11_236 0.44 -0.1
51,428 - Ac3H11_236 0.46 -0.4
51,428 - Ac3H11_236 0.46 -0.4
51,428 - Ac3H11_236 0.46 -1.1

Or see this region's nucleotide sequence