Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_232 and Ac3H11_233 are separated by 183 nucleotides Ac3H11_233 and Ac3H11_234 are separated by 286 nucleotides
Ac3H11_232 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 46,713 to 48,290
_232
Ac3H11_233 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 48,474 to 49,049
_233
Ac3H11_234 - Bacterioferritin, at 49,336 to 49,812
_234
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 47.602 kb on + strand, within Ac3H11_232 at 47.603 kb on - strand, within Ac3H11_232 at 47.654 kb on - strand, within Ac3H11_232 at 47.921 kb on - strand, within Ac3H11_232 at 47.921 kb on - strand at 48.253 kb on + strand at 48.317 kb on + strand at 48.318 kb on - strand at 48.318 kb on - strand at 48.318 kb on - strand at 48.318 kb on - strand at 48.318 kb on - strand at 48.318 kb on - strand at 48.475 kb on + strand at 48.476 kb on - strand at 48.476 kb on - strand at 48.569 kb on - strand, within Ac3H11_233 at 48.865 kb on + strand at 49.062 kb on - strand at 49.093 kb on + strand at 49.094 kb on - strand at 49.152 kb on + strand at 49.153 kb on - strand at 49.153 kb on - strand at 49.153 kb on - strand at 49.310 kb on + strand at 49.311 kb on - strand at 49.311 kb on - strand at 49.380 kb on + strand at 49.380 kb on + strand at 49.380 kb on + strand at 49.381 kb on - strand at 49.381 kb on - strand at 49.381 kb on - strand at 49.381 kb on - strand at 49.408 kb on + strand, within Ac3H11_234 at 49.409 kb on - strand, within Ac3H11_234 at 49.420 kb on + strand, within Ac3H11_234 at 49.420 kb on + strand, within Ac3H11_234 at 49.468 kb on + strand, within Ac3H11_234 at 49.468 kb on + strand, within Ac3H11_234 at 49.469 kb on - strand, within Ac3H11_234 at 49.675 kb on + strand, within Ac3H11_234 at 49.676 kb on - strand, within Ac3H11_234 at 49.780 kb on + strand at 49.780 kb on + strand at 49.780 kb on + strand at 49.781 kb on - strand at 49.781 kb on - strand at 50.038 kb on + strand at 50.038 kb on + strand at 50.038 kb on + strand at 50.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 47,602 + Ac3H11_232 0.56 +0.1 47,603 - Ac3H11_232 0.56 +3.5 47,654 - Ac3H11_232 0.60 -0.9 47,921 - Ac3H11_232 0.77 -1.9 47,921 - -0.8 48,253 + +0.8 48,317 + -2.6 48,318 - +0.5 48,318 - +0.4 48,318 - -0.0 48,318 - +0.4 48,318 - +1.0 48,318 - -0.9 48,475 + +0.1 48,476 - -0.3 48,476 - +0.1 48,569 - Ac3H11_233 0.16 -1.8 48,865 + -2.8 49,062 - +0.1 49,093 + +0.6 49,094 - -0.5 49,152 + -0.8 49,153 - -0.4 49,153 - +0.1 49,153 - +0.6 49,310 + -1.1 49,311 - +1.5 49,311 - -2.0 49,380 + -0.8 49,380 + +1.4 49,380 + +3.0 49,381 - +0.8 49,381 - +0.7 49,381 - +0.7 49,381 - -1.4 49,408 + Ac3H11_234 0.15 +0.3 49,409 - Ac3H11_234 0.15 -1.9 49,420 + Ac3H11_234 0.18 -0.7 49,420 + Ac3H11_234 0.18 -1.6 49,468 + Ac3H11_234 0.28 -0.7 49,468 + Ac3H11_234 0.28 -0.8 49,469 - Ac3H11_234 0.28 -2.4 49,675 + Ac3H11_234 0.71 -0.9 49,676 - Ac3H11_234 0.71 -0.7 49,780 + -2.0 49,780 + +0.7 49,780 + -0.1 49,781 - -2.3 49,781 - -2.6 50,038 + +0.2 50,038 + +0.5 50,038 + +0.2 50,039 - +1.5
Or see this region's nucleotide sequence