Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2190 and Ac3H11_2191 are separated by 136 nucleotides Ac3H11_2191 and Ac3H11_2192 are separated by 27 nucleotides Ac3H11_2192 and Ac3H11_2193 are separated by 289 nucleotides Ac3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides
Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487
_2190
Ac3H11_2191 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 421,624 to 422,067
_2191
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616
_2193
Ac3H11_2194 - putative exported protein, at 423,687 to 424,688
_2194
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 421.195 kb on + strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.231 kb on + strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.437 kb on + strand at 421.438 kb on - strand at 421.487 kb on + strand at 421.487 kb on + strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.526 kb on + strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.528 kb on + strand at 421.561 kb on - strand at 421.561 kb on - strand at 421.563 kb on + strand at 421.563 kb on + strand at 421.778 kb on + strand, within Ac3H11_2191 at 421.804 kb on + strand, within Ac3H11_2191 at 422.558 kb on + strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.732 kb on + strand, within Ac3H11_2192 at 422.733 kb on - strand, within Ac3H11_2192 at 422.819 kb on + strand, within Ac3H11_2192 at 423.082 kb on - strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.133 kb on - strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.489 kb on - strand, within Ac3H11_2193 at 423.576 kb on - strand, within Ac3H11_2193 at 423.589 kb on - strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 421,195 + Ac3H11_2190 0.68 -0.5 421,196 - Ac3H11_2190 0.68 -1.7 421,196 - Ac3H11_2190 0.68 -0.7 421,196 - Ac3H11_2190 0.68 +4.3 421,231 + Ac3H11_2190 0.72 -0.4 421,232 - Ac3H11_2190 0.72 +0.1 421,232 - Ac3H11_2190 0.72 -0.3 421,437 + -0.5 421,438 - -1.2 421,487 + -0.7 421,487 + +0.9 421,488 - -0.7 421,488 - +0.6 421,488 - -0.0 421,526 + -0.4 421,527 - -1.8 421,527 - -0.8 421,527 - +0.4 421,528 + +0.9 421,561 - -0.8 421,561 - +4.0 421,563 + -0.3 421,563 + -1.8 421,778 + Ac3H11_2191 0.35 -0.3 421,804 + Ac3H11_2191 0.41 -1.5 422,558 + Ac3H11_2192 0.55 +0.4 422,559 - Ac3H11_2192 0.55 -0.9 422,559 - Ac3H11_2192 0.55 +0.3 422,559 - Ac3H11_2192 0.55 +0.3 422,600 + Ac3H11_2192 0.59 -0.0 422,600 + Ac3H11_2192 0.59 +0.1 422,600 + Ac3H11_2192 0.59 +0.3 422,601 - Ac3H11_2192 0.60 -1.1 422,601 - Ac3H11_2192 0.60 +0.6 422,601 - Ac3H11_2192 0.60 -0.8 422,601 - Ac3H11_2192 0.60 +1.0 422,732 + Ac3H11_2192 0.75 -0.9 422,733 - Ac3H11_2192 0.75 -1.2 422,819 + Ac3H11_2192 0.85 -0.1 423,082 - -0.4 423,127 + +1.5 423,127 + +0.6 423,127 + -0.3 423,127 + +1.1 423,127 + +1.4 423,127 + +0.1 423,127 + -0.0 423,128 - +1.3 423,128 - +1.1 423,128 - +0.3 423,128 - -0.4 423,128 - +0.3 423,132 + +1.3 423,132 + +0.8 423,132 + -1.2 423,132 + +1.1 423,133 - +1.0 423,139 + +0.9 423,139 + +0.1 423,139 + -0.3 423,139 + -1.5 423,139 + +0.7 423,139 + +0.4 423,139 + +0.5 423,140 - +0.7 423,140 - +0.6 423,140 - +0.6 423,140 - -0.1 423,140 - +0.1 423,140 - -0.2 423,140 - +1.4 423,140 - +1.3 423,140 - -0.3 423,368 + Ac3H11_2193 0.35 +1.0 423,368 + Ac3H11_2193 0.35 -0.2 423,368 + Ac3H11_2193 0.35 -0.6 423,368 + Ac3H11_2193 0.35 -0.7 423,369 - Ac3H11_2193 0.35 -0.2 423,369 - Ac3H11_2193 0.35 +1.3 423,401 + Ac3H11_2193 0.44 -1.9 423,401 + Ac3H11_2193 0.44 +0.5 423,401 + Ac3H11_2193 0.44 -0.3 423,401 + Ac3H11_2193 0.44 -0.1 423,401 + Ac3H11_2193 0.44 -0.2 423,401 + Ac3H11_2193 0.44 +0.9 423,402 - Ac3H11_2193 0.44 +0.7 423,402 - Ac3H11_2193 0.44 +1.1 423,402 - Ac3H11_2193 0.44 +1.5 423,402 - Ac3H11_2193 0.44 +0.1 423,402 - Ac3H11_2193 0.44 -0.7 423,402 - Ac3H11_2193 0.44 +1.3 423,402 - Ac3H11_2193 0.44 +0.3 423,402 - Ac3H11_2193 0.44 -1.4 423,488 + Ac3H11_2193 0.66 +1.3 423,488 + Ac3H11_2193 0.66 +0.5 423,488 + Ac3H11_2193 0.66 -0.4 423,488 + Ac3H11_2193 0.66 +1.3 423,488 + Ac3H11_2193 0.66 -1.0 423,489 - Ac3H11_2193 0.67 -0.1 423,576 - Ac3H11_2193 0.89 -0.2 423,589 - -1.1 423,668 + +1.9 423,668 + +0.6 423,668 + +0.5 423,668 + +1.1 423,668 + +0.3 423,668 + -0.6 423,668 + -0.7 423,668 + +0.8 423,668 + -1.6 423,669 - +0.7 423,669 - -0.7 423,669 - +1.2 423,669 - -0.2 423,669 - +1.0
Or see this region's nucleotide sequence