Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2135 and Ac3H11_2136 are separated by 225 nucleotides Ac3H11_2136 and Ac3H11_2137 are separated by 26 nucleotides Ac3H11_2137 and Ac3H11_2138 are separated by 30 nucleotides Ac3H11_2138 and Ac3H11_2139 overlap by 23 nucleotides
Ac3H11_2135 - LSU ribosomal protein L3p (L3e), at 366,267 to 366,941
_2135
Ac3H11_2136 - SSU ribosomal protein S10p (S20e), at 367,167 to 367,478
_2136
Ac3H11_2137 - Translation elongation factor Tu, at 367,505 to 368,995
_2137
Ac3H11_2138 - hypothetical protein, at 369,026 to 369,160
_2138
Ac3H11_2139 - Translation elongation factor G, at 369,138 to 371,240
_2139
Position (kb) 367
368
369 Strain fitness (log2 ratio) -1
0
1 at 367.093 kb on - strand at 367.168 kb on + strand at 367.168 kb on + strand at 367.168 kb on + strand at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 367,093 - +0.1 367,168 + -0.9 367,168 + -0.3 367,168 + -0.1 369,136 - Ac3H11_2138 0.81 -1.1 369,136 - Ac3H11_2138 0.81 -0.7 369,136 - Ac3H11_2138 0.81 -0.1 369,136 - Ac3H11_2138 0.81 -0.4 369,136 - Ac3H11_2138 0.81 -0.2 369,136 - Ac3H11_2138 0.81 -1.2 369,136 - Ac3H11_2138 0.81 -0.6 369,136 - Ac3H11_2138 0.81 -0.8 369,140 - -1.5 369,140 - -0.7 369,140 - -0.7 369,140 - -1.4 369,140 - -0.3 369,140 - -1.5 369,140 - -1.5 369,140 - -0.5 369,140 - -0.6 369,140 - -0.5
Or see this region's nucleotide sequence