Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2082

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2081 and Ac3H11_2082 are separated by 99 nucleotidesAc3H11_2082 and Ac3H11_2083 are separated by 38 nucleotidesAc3H11_2083 and Ac3H11_2084 are separated by 234 nucleotides Ac3H11_2081 - Gluconolactonase (EC 3.1.1.17), at 306,473 to 307,423 _2081 Ac3H11_2082 - Phosphogluconate dehydratase (EC 4.2.1.12), at 307,523 to 309,292 _2082 Ac3H11_2083 - 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 309,331 to 309,960 _2083 Ac3H11_2084 - protein of unknown function DUF805, at 310,195 to 310,497 _2084 Position (kb) 307 308 309 310Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 307.469 kb on + strandat 309.290 kb on + strandat 309.290 kb on + strandat 309.290 kb on + strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.303 kb on - strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.319 kb on - strandat 309.393 kb on - strandat 309.808 kb on - strandat 309.829 kb on + strand, within Ac3H11_2083at 309.829 kb on + strand, within Ac3H11_2083at 309.981 kb on + strandat 310.016 kb on - strandat 310.028 kb on - strandat 310.127 kb on - strandat 310.195 kb on - strandat 310.234 kb on + strand, within Ac3H11_2084at 310.234 kb on + strand, within Ac3H11_2084

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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307,469 + +0.7
309,290 + -1.7
309,290 + +0.4
309,290 + +0.6
309,291 - -2.9
309,291 - -2.2
309,291 - -0.1
309,291 - -2.8
309,291 - -3.3
309,303 - -2.4
309,314 + -1.4
309,314 + -3.4
309,314 + -0.4
309,314 + -1.0
309,314 + +0.1
309,314 + -0.7
309,314 + +0.6
309,314 + -0.5
309,314 + -0.6
309,315 - -2.0
309,315 - -1.2
309,315 - -0.9
309,315 - -1.4
309,315 - -2.0
309,315 - -1.3
309,315 - -2.0
309,315 - -0.5
309,318 + -1.4
309,318 + +2.1
309,318 + -1.3
309,318 + -0.5
309,319 - -2.5
309,393 - -1.7
309,808 - -2.3
309,829 + Ac3H11_2083 0.79 -0.5
309,829 + Ac3H11_2083 0.79 -1.9
309,981 + -1.0
310,016 - +1.4
310,028 - +0.0
310,127 - -1.0
310,195 - -0.3
310,234 + Ac3H11_2084 0.13 -0.9
310,234 + Ac3H11_2084 0.13 -0.4

Or see this region's nucleotide sequence