Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1918

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1917 and Ac3H11_1918 are separated by 27 nucleotidesAc3H11_1918 and Ac3H11_1919 are separated by 12 nucleotides Ac3H11_1917 - conserved hypothetical protein, at 125,809 to 126,699 _1917 Ac3H11_1918 - TesB-like acyl-CoA thioesterase 2, at 126,727 to 127,593 _1918 Ac3H11_1919 - Enoyl-CoA hydratase (EC 4.2.1.17), at 127,606 to 128,445 _1919 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 125.743 kb on + strandat 125.744 kb on - strandat 125.757 kb on - strandat 125.757 kb on - strandat 125.757 kb on - strandat 125.863 kb on + strandat 125.863 kb on + strandat 125.864 kb on - strandat 125.932 kb on + strand, within Ac3H11_1917at 125.932 kb on + strand, within Ac3H11_1917at 125.932 kb on + strand, within Ac3H11_1917at 125.933 kb on - strand, within Ac3H11_1917at 125.933 kb on - strand, within Ac3H11_1917at 125.979 kb on + strand, within Ac3H11_1917at 125.979 kb on + strand, within Ac3H11_1917at 125.979 kb on + strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 125.980 kb on - strand, within Ac3H11_1917at 126.064 kb on + strand, within Ac3H11_1917at 126.064 kb on + strand, within Ac3H11_1917at 126.064 kb on + strand, within Ac3H11_1917at 126.065 kb on - strand, within Ac3H11_1917at 126.065 kb on - strand, within Ac3H11_1917at 126.115 kb on + strand, within Ac3H11_1917at 126.115 kb on + strand, within Ac3H11_1917at 126.115 kb on + strand, within Ac3H11_1917at 126.116 kb on - strand, within Ac3H11_1917at 126.116 kb on - strand, within Ac3H11_1917at 126.116 kb on - strand, within Ac3H11_1917at 126.116 kb on - strand, within Ac3H11_1917at 126.211 kb on + strand, within Ac3H11_1917at 126.212 kb on - strand, within Ac3H11_1917at 126.253 kb on + strand, within Ac3H11_1917at 126.253 kb on + strand, within Ac3H11_1917at 126.253 kb on + strand, within Ac3H11_1917at 126.253 kb on + strand, within Ac3H11_1917at 126.253 kb on + strand, within Ac3H11_1917at 126.254 kb on - strand, within Ac3H11_1917at 126.298 kb on + strand, within Ac3H11_1917at 126.299 kb on - strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.385 kb on + strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.386 kb on - strand, within Ac3H11_1917at 126.424 kb on + strand, within Ac3H11_1917at 126.424 kb on + strand, within Ac3H11_1917at 126.514 kb on + strand, within Ac3H11_1917at 126.514 kb on + strand, within Ac3H11_1917at 126.515 kb on - strand, within Ac3H11_1917at 126.688 kb on - strandat 126.688 kb on - strandat 126.826 kb on + strand, within Ac3H11_1918at 126.826 kb on + strand, within Ac3H11_1918at 126.827 kb on - strand, within Ac3H11_1918at 126.827 kb on - strand, within Ac3H11_1918at 126.827 kb on - strand, within Ac3H11_1918at 126.850 kb on + strand, within Ac3H11_1918at 126.851 kb on - strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.958 kb on + strand, within Ac3H11_1918at 126.959 kb on - strand, within Ac3H11_1918at 126.959 kb on - strand, within Ac3H11_1918at 126.959 kb on - strand, within Ac3H11_1918at 126.959 kb on - strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.423 kb on + strand, within Ac3H11_1918at 127.424 kb on - strand, within Ac3H11_1918at 127.424 kb on - strand, within Ac3H11_1918at 127.424 kb on - strand, within Ac3H11_1918at 127.424 kb on - strand, within Ac3H11_1918at 127.424 kb on - strand, within Ac3H11_1918at 127.579 kb on + strandat 127.582 kb on + strandat 127.582 kb on + strandat 127.582 kb on + strandat 127.582 kb on + strandat 127.583 kb on - strandat 127.591 kb on + strandat 127.592 kb on - strandat 127.592 kb on - strandat 127.592 kb on - strandat 127.592 kb on - strandat 127.592 kb on - strandat 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strand, within Ac3H11_1919at 127.771 kb on + strandat 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 127.772 kb on - strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.029 kb on + strand, within Ac3H11_1919at 128.030 kb on - strand, within Ac3H11_1919at 128.030 kb on - strand, within Ac3H11_1919at 128.030 kb on - strand, within Ac3H11_1919at 128.125 kb on + strand, within Ac3H11_1919at 128.233 kb on + strand, within Ac3H11_1919at 128.233 kb on + strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.234 kb on - strand, within Ac3H11_1919at 128.409 kb on + strandat 128.409 kb on + strandat 128.409 kb on + strandat 128.410 kb on - strandat 128.503 kb on - strandat 128.574 kb on + strandat 128.574 kb on + strandat 128.574 kb on + strandat 128.574 kb on + strandat 128.574 kb on + strandat 128.575 kb on - strandat 128.575 kb on - strandat 128.575 kb on - strandat 128.575 kb on - strandat 128.575 kb on - strandat 128.575 kb on - strandat 128.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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125,743 + +0.7
125,744 - -0.5
125,757 - -1.0
125,757 - +1.7
125,757 - +0.1
125,863 + +0.8
125,863 + +0.3
125,864 - -0.7
125,932 + Ac3H11_1917 0.14 -0.5
125,932 + Ac3H11_1917 0.14 -1.0
125,932 + Ac3H11_1917 0.14 -0.8
125,933 - Ac3H11_1917 0.14 -0.4
125,933 - Ac3H11_1917 0.14 +1.4
125,979 + Ac3H11_1917 0.19 +0.1
125,979 + Ac3H11_1917 0.19 +0.1
125,979 + Ac3H11_1917 0.19 -1.2
125,980 - Ac3H11_1917 0.19 +2.4
125,980 - Ac3H11_1917 0.19 +0.7
125,980 - Ac3H11_1917 0.19 -1.0
125,980 - Ac3H11_1917 0.19 +0.7
125,980 - Ac3H11_1917 0.19 -0.6
125,980 - Ac3H11_1917 0.19 -0.7
126,064 + Ac3H11_1917 0.29 +1.0
126,064 + Ac3H11_1917 0.29 +1.6
126,064 + Ac3H11_1917 0.29 -0.5
126,065 - Ac3H11_1917 0.29 -0.4
126,065 - Ac3H11_1917 0.29 -2.0
126,115 + Ac3H11_1917 0.34 -2.4
126,115 + Ac3H11_1917 0.34 +0.9
126,115 + Ac3H11_1917 0.34 +0.5
126,116 - Ac3H11_1917 0.34 +0.8
126,116 - Ac3H11_1917 0.34 +0.2
126,116 - Ac3H11_1917 0.34 -0.4
126,116 - Ac3H11_1917 0.34 -1.9
126,211 + Ac3H11_1917 0.45 +0.2
126,212 - Ac3H11_1917 0.45 -0.1
126,253 + Ac3H11_1917 0.50 -0.8
126,253 + Ac3H11_1917 0.50 -2.3
126,253 + Ac3H11_1917 0.50 -0.4
126,253 + Ac3H11_1917 0.50 +2.4
126,253 + Ac3H11_1917 0.50 -0.2
126,254 - Ac3H11_1917 0.50 +0.9
126,298 + Ac3H11_1917 0.55 -0.2
126,299 - Ac3H11_1917 0.55 -1.8
126,385 + Ac3H11_1917 0.65 +0.2
126,385 + Ac3H11_1917 0.65 +0.4
126,385 + Ac3H11_1917 0.65 +1.4
126,385 + Ac3H11_1917 0.65 -0.1
126,385 + Ac3H11_1917 0.65 -0.6
126,385 + Ac3H11_1917 0.65 -0.2
126,385 + Ac3H11_1917 0.65 -0.4
126,385 + Ac3H11_1917 0.65 -0.8
126,385 + Ac3H11_1917 0.65 -0.4
126,385 + Ac3H11_1917 0.65 +0.3
126,385 + Ac3H11_1917 0.65 +0.2
126,385 + Ac3H11_1917 0.65 -1.0
126,386 - Ac3H11_1917 0.65 -1.6
126,386 - Ac3H11_1917 0.65 +0.7
126,386 - Ac3H11_1917 0.65 +0.9
126,386 - Ac3H11_1917 0.65 +0.9
126,386 - Ac3H11_1917 0.65 +0.3
126,386 - Ac3H11_1917 0.65 +1.3
126,386 - Ac3H11_1917 0.65 +0.5
126,386 - Ac3H11_1917 0.65 -0.1
126,386 - Ac3H11_1917 0.65 +2.6
126,386 - Ac3H11_1917 0.65 -1.0
126,386 - Ac3H11_1917 0.65 -1.1
126,386 - Ac3H11_1917 0.65 +1.5
126,386 - Ac3H11_1917 0.65 +1.5
126,386 - Ac3H11_1917 0.65 -0.0
126,424 + Ac3H11_1917 0.69 +1.0
126,424 + Ac3H11_1917 0.69 -0.4
126,514 + Ac3H11_1917 0.79 +1.2
126,514 + Ac3H11_1917 0.79 +0.6
126,515 - Ac3H11_1917 0.79 +0.3
126,688 - +1.2
126,688 - -1.6
126,826 + Ac3H11_1918 0.11 +1.0
126,826 + Ac3H11_1918 0.11 +1.3
126,827 - Ac3H11_1918 0.12 +0.9
126,827 - Ac3H11_1918 0.12 -0.4
126,827 - Ac3H11_1918 0.12 -2.5
126,850 + Ac3H11_1918 0.14 -0.5
126,851 - Ac3H11_1918 0.14 +1.0
126,958 + Ac3H11_1918 0.27 -0.5
126,958 + Ac3H11_1918 0.27 -1.1
126,958 + Ac3H11_1918 0.27 +0.7
126,958 + Ac3H11_1918 0.27 -1.2
126,958 + Ac3H11_1918 0.27 -0.8
126,958 + Ac3H11_1918 0.27 +0.0
126,959 - Ac3H11_1918 0.27 -2.9
126,959 - Ac3H11_1918 0.27 +1.1
126,959 - Ac3H11_1918 0.27 +1.2
126,959 - Ac3H11_1918 0.27 -0.1
127,423 + Ac3H11_1918 0.80 -1.5
127,423 + Ac3H11_1918 0.80 -1.0
127,423 + Ac3H11_1918 0.80 +0.9
127,423 + Ac3H11_1918 0.80 +1.2
127,423 + Ac3H11_1918 0.80 -0.1
127,423 + Ac3H11_1918 0.80 -0.1
127,424 - Ac3H11_1918 0.80 +0.3
127,424 - Ac3H11_1918 0.80 +0.5
127,424 - Ac3H11_1918 0.80 +1.3
127,424 - Ac3H11_1918 0.80 -0.3
127,424 - Ac3H11_1918 0.80 -1.2
127,579 + -0.5
127,582 + -1.2
127,582 + -0.1
127,582 + +1.2
127,582 + -1.6
127,583 - -0.3
127,591 + +3.1
127,592 - +1.4
127,592 - +1.4
127,592 - -1.1
127,592 - -0.4
127,592 - -0.9
127,771 + Ac3H11_1919 0.20 +0.0
127,771 + Ac3H11_1919 0.20 -0.0
127,771 + Ac3H11_1919 0.20 +0.3
127,771 + Ac3H11_1919 0.20 -0.5
127,771 + Ac3H11_1919 0.20 +0.4
127,771 + Ac3H11_1919 0.20 +1.1
127,771 + Ac3H11_1919 0.20 -0.9
127,771 + Ac3H11_1919 0.20 +0.8
127,771 + Ac3H11_1919 0.20 +0.6
127,771 + Ac3H11_1919 0.20 -0.7
127,771 + Ac3H11_1919 0.20 -0.2
127,771 + Ac3H11_1919 0.20 +0.9
127,771 + Ac3H11_1919 0.20 -0.2
127,771 + Ac3H11_1919 0.20 +0.3
127,771 + Ac3H11_1919 0.20 +0.5
127,771 + Ac3H11_1919 0.20 +0.5
127,771 + Ac3H11_1919 0.20 -1.2
127,771 + Ac3H11_1919 0.20 -0.4
127,771 + Ac3H11_1919 0.20 -1.5
127,771 + Ac3H11_1919 0.20 +1.8
127,771 + Ac3H11_1919 0.20 +0.6
127,771 + Ac3H11_1919 0.20 +0.0
127,771 + Ac3H11_1919 0.20 -0.0
127,771 + Ac3H11_1919 0.20 -0.3
127,771 + Ac3H11_1919 0.20 +1.2
127,771 + Ac3H11_1919 0.20 +3.8
127,771 + Ac3H11_1919 0.20 -1.2
127,771 + Ac3H11_1919 0.20 +0.1
127,771 + Ac3H11_1919 0.20 +0.5
127,771 + Ac3H11_1919 0.20 +0.5
127,771 + -1.3
127,772 - Ac3H11_1919 0.20 +0.0
127,772 - Ac3H11_1919 0.20 -1.0
127,772 - Ac3H11_1919 0.20 -0.1
127,772 - Ac3H11_1919 0.20 +0.1
127,772 - Ac3H11_1919 0.20 +0.2
127,772 - Ac3H11_1919 0.20 -0.4
127,772 - Ac3H11_1919 0.20 +0.6
127,772 - Ac3H11_1919 0.20 -0.3
127,772 - Ac3H11_1919 0.20 +0.1
127,772 - Ac3H11_1919 0.20 -0.7
127,772 - Ac3H11_1919 0.20 -0.0
127,772 - Ac3H11_1919 0.20 +0.2
127,772 - Ac3H11_1919 0.20 -0.4
127,772 - Ac3H11_1919 0.20 +0.2
127,772 - Ac3H11_1919 0.20 +0.8
127,772 - Ac3H11_1919 0.20 -0.5
127,772 - Ac3H11_1919 0.20 -1.6
127,772 - Ac3H11_1919 0.20 -1.5
127,772 - Ac3H11_1919 0.20 +0.2
127,772 - Ac3H11_1919 0.20 -0.1
127,772 - Ac3H11_1919 0.20 -0.3
127,772 - Ac3H11_1919 0.20 -2.6
127,772 - Ac3H11_1919 0.20 +0.8
128,029 + Ac3H11_1919 0.50 +1.2
128,029 + Ac3H11_1919 0.50 +1.9
128,029 + Ac3H11_1919 0.50 -0.1
128,029 + Ac3H11_1919 0.50 +0.8
128,029 + Ac3H11_1919 0.50 -0.4
128,029 + Ac3H11_1919 0.50 +1.3
128,030 - Ac3H11_1919 0.50 +1.2
128,030 - Ac3H11_1919 0.50 -2.1
128,030 - Ac3H11_1919 0.50 -3.1
128,125 + Ac3H11_1919 0.62 +0.4
128,233 + Ac3H11_1919 0.75 -0.6
128,233 + Ac3H11_1919 0.75 +0.0
128,234 - Ac3H11_1919 0.75 -0.7
128,234 - Ac3H11_1919 0.75 +0.5
128,234 - Ac3H11_1919 0.75 +1.2
128,234 - Ac3H11_1919 0.75 +1.9
128,234 - Ac3H11_1919 0.75 +0.3
128,234 - Ac3H11_1919 0.75 -0.2
128,409 + +0.2
128,409 + -0.1
128,409 + -0.5
128,410 - +0.3
128,503 - +0.2
128,574 + +1.0
128,574 + +1.3
128,574 + +0.4
128,574 + +0.1
128,574 + -0.2
128,575 - -1.4
128,575 - +1.5
128,575 - -1.0
128,575 - +0.5
128,575 - +0.6
128,575 - +1.2
128,575 - +1.8

Or see this region's nucleotide sequence