Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1849

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1848 and Ac3H11_1849 are separated by 73 nucleotidesAc3H11_1849 and Ac3H11_1850 are separated by 146 nucleotides Ac3H11_1848 - Tricarboxylate transport protein TctC, at 51,524 to 52,492 _1848 Ac3H11_1849 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data), at 52,566 to 53,711 _1849 Ac3H11_1850 - Lipase chaperone, at 53,858 to 54,853 _1850 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.628 kb on + strand, within Ac3H11_1848at 51.629 kb on - strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.029 kb on + strand, within Ac3H11_1848at 52.030 kb on - strand, within Ac3H11_1848at 52.030 kb on - strand, within Ac3H11_1848at 52.030 kb on - strand, within Ac3H11_1848at 52.030 kb on - strand, within Ac3H11_1848at 52.030 kb on - strand, within Ac3H11_1848at 52.059 kb on + strand, within Ac3H11_1848at 52.059 kb on + strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.060 kb on - strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.179 kb on + strand, within Ac3H11_1848at 52.180 kb on - strand, within Ac3H11_1848at 52.194 kb on + strand, within Ac3H11_1848at 52.194 kb on + strand, within Ac3H11_1848at 52.194 kb on + strand, within Ac3H11_1848at 52.195 kb on - strand, within Ac3H11_1848at 52.195 kb on - strand, within Ac3H11_1848at 52.276 kb on + strand, within Ac3H11_1848at 52.277 kb on - strand, within Ac3H11_1848at 52.318 kb on + strand, within Ac3H11_1848at 52.392 kb on + strand, within Ac3H11_1848at 52.481 kb on - strandat 52.481 kb on - strandat 52.525 kb on + strandat 52.525 kb on + strandat 52.525 kb on + strandat 52.525 kb on + strandat 52.526 kb on - strandat 52.526 kb on - strandat 52.526 kb on - strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.528 kb on - strandat 52.528 kb on - strandat 52.528 kb on - strandat 52.528 kb on - strandat 52.546 kb on - strandat 52.748 kb on + strand, within Ac3H11_1849at 52.748 kb on + strand, within Ac3H11_1849at 52.832 kb on - strand, within Ac3H11_1849at 52.832 kb on - strand, within Ac3H11_1849at 52.832 kb on - strand, within Ac3H11_1849at 52.832 kb on - strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.834 kb on + strand, within Ac3H11_1849at 52.835 kb on - strand, within Ac3H11_1849at 52.835 kb on - strand, within Ac3H11_1849at 52.835 kb on - strand, within Ac3H11_1849at 52.835 kb on - strand, within Ac3H11_1849at 52.835 kb on - strand, within Ac3H11_1849at 53.056 kb on + strand, within Ac3H11_1849at 53.057 kb on - strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.111 kb on - strand, within Ac3H11_1849at 53.111 kb on - strand, within Ac3H11_1849at 53.143 kb on + strand, within Ac3H11_1849at 53.144 kb on - strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.371 kb on + strand, within Ac3H11_1849at 53.371 kb on + strand, within Ac3H11_1849at 53.372 kb on - strand, within Ac3H11_1849at 53.372 kb on - strand, within Ac3H11_1849at 53.440 kb on + strand, within Ac3H11_1849at 53.440 kb on + strand, within Ac3H11_1849at 53.441 kb on - strand, within Ac3H11_1849at 53.497 kb on + strand, within Ac3H11_1849at 53.497 kb on + strand, within Ac3H11_1849at 53.718 kb on + strandat 53.718 kb on + strandat 53.718 kb on + strandat 53.718 kb on + strandat 53.833 kb on - strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.845 kb on - strandat 53.845 kb on - strandat 53.845 kb on - strandat 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.001 kb on - strand, within Ac3H11_1850at 54.001 kb on - strand, within Ac3H11_1850at 54.076 kb on - strand, within Ac3H11_1850at 54.105 kb on + strand, within Ac3H11_1850at 54.105 kb on + strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.288 kb on + strandat 54.289 kb on - strand, within Ac3H11_1850at 54.327 kb on + strand, within Ac3H11_1850at 54.327 kb on + strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.342 kb on - strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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51,628 + Ac3H11_1848 0.11 -0.6
51,629 - Ac3H11_1848 0.11 -0.7
52,029 + Ac3H11_1848 0.52 -0.1
52,029 + Ac3H11_1848 0.52 +1.8
52,029 + Ac3H11_1848 0.52 +0.3
52,029 + Ac3H11_1848 0.52 -0.7
52,029 + Ac3H11_1848 0.52 +0.3
52,029 + Ac3H11_1848 0.52 +2.5
52,029 + Ac3H11_1848 0.52 +0.1
52,030 - Ac3H11_1848 0.52 -0.6
52,030 - Ac3H11_1848 0.52 -1.7
52,030 - Ac3H11_1848 0.52 -1.0
52,030 - Ac3H11_1848 0.52 -1.8
52,030 - Ac3H11_1848 0.52 +1.5
52,059 + Ac3H11_1848 0.55 -0.6
52,059 + Ac3H11_1848 0.55 -1.2
52,060 - Ac3H11_1848 0.55 +0.3
52,060 - Ac3H11_1848 0.55 -0.5
52,060 - Ac3H11_1848 0.55 -0.7
52,060 - Ac3H11_1848 0.55 +1.6
52,060 - Ac3H11_1848 0.55 +0.7
52,060 - Ac3H11_1848 0.55 -0.4
52,060 - Ac3H11_1848 0.55 +0.7
52,060 - Ac3H11_1848 0.55 -1.5
52,179 + Ac3H11_1848 0.68 -1.5
52,179 + Ac3H11_1848 0.68 -0.4
52,179 + Ac3H11_1848 0.68 -0.0
52,179 + Ac3H11_1848 0.68 -0.6
52,179 + Ac3H11_1848 0.68 -0.1
52,179 + Ac3H11_1848 0.68 -0.0
52,180 - Ac3H11_1848 0.68 +0.2
52,194 + Ac3H11_1848 0.69 +1.5
52,194 + Ac3H11_1848 0.69 -0.2
52,194 + Ac3H11_1848 0.69 -0.0
52,195 - Ac3H11_1848 0.69 +0.1
52,195 - Ac3H11_1848 0.69 -0.1
52,276 + Ac3H11_1848 0.78 -1.2
52,277 - Ac3H11_1848 0.78 -0.1
52,318 + Ac3H11_1848 0.82 -0.7
52,392 + Ac3H11_1848 0.90 -0.2
52,481 - +1.3
52,481 - +0.4
52,525 + +0.1
52,525 + +0.5
52,525 + -1.0
52,525 + +0.5
52,526 - +0.7
52,526 - -0.0
52,526 - +1.2
52,527 + -0.4
52,527 + -2.8
52,527 + -1.7
52,527 + -0.2
52,527 + -0.8
52,527 + +0.2
52,527 + -1.2
52,527 + -0.6
52,527 + -1.0
52,527 + -1.7
52,527 + -0.4
52,528 - -1.6
52,528 - +0.0
52,528 - -0.4
52,528 - -1.2
52,546 - +0.6
52,748 + Ac3H11_1849 0.16 -1.4
52,748 + Ac3H11_1849 0.16 -2.0
52,832 - Ac3H11_1849 0.23 -0.4
52,832 - Ac3H11_1849 0.23 -0.3
52,832 - Ac3H11_1849 0.23 +0.2
52,832 - Ac3H11_1849 0.23 +0.3
52,834 + Ac3H11_1849 0.23 +0.2
52,834 + Ac3H11_1849 0.23 -1.4
52,834 + Ac3H11_1849 0.23 +0.3
52,834 + Ac3H11_1849 0.23 -0.0
52,834 + Ac3H11_1849 0.23 -0.4
52,834 + Ac3H11_1849 0.23 +0.9
52,834 + Ac3H11_1849 0.23 -0.1
52,834 + Ac3H11_1849 0.23 +0.6
52,835 - Ac3H11_1849 0.23 -1.9
52,835 - Ac3H11_1849 0.23 +2.2
52,835 - Ac3H11_1849 0.23 -0.5
52,835 - Ac3H11_1849 0.23 -1.2
52,835 - Ac3H11_1849 0.23 -0.2
53,056 + Ac3H11_1849 0.43 -0.2
53,057 - Ac3H11_1849 0.43 +0.4
53,110 + Ac3H11_1849 0.47 +0.6
53,110 + Ac3H11_1849 0.47 -0.3
53,110 + Ac3H11_1849 0.47 -2.0
53,111 - Ac3H11_1849 0.48 -1.2
53,111 - Ac3H11_1849 0.48 -0.0
53,143 + Ac3H11_1849 0.50 -0.1
53,144 - Ac3H11_1849 0.50 -2.2
53,233 + Ac3H11_1849 0.58 -2.8
53,233 + Ac3H11_1849 0.58 +1.1
53,233 + Ac3H11_1849 0.58 -0.6
53,233 + Ac3H11_1849 0.58 -0.7
53,233 + Ac3H11_1849 0.58 -0.8
53,233 + Ac3H11_1849 0.58 +0.1
53,234 - Ac3H11_1849 0.58 -0.3
53,234 - Ac3H11_1849 0.58 +0.3
53,234 - Ac3H11_1849 0.58 +0.1
53,234 - Ac3H11_1849 0.58 +0.8
53,234 - Ac3H11_1849 0.58 +0.6
53,234 - Ac3H11_1849 0.58 +0.6
53,234 - Ac3H11_1849 0.58 +3.2
53,269 + Ac3H11_1849 0.61 -0.1
53,269 + Ac3H11_1849 0.61 -0.7
53,269 + Ac3H11_1849 0.61 -0.7
53,270 - Ac3H11_1849 0.61 -1.1
53,270 - Ac3H11_1849 0.61 -1.0
53,270 - Ac3H11_1849 0.61 -0.8
53,270 - Ac3H11_1849 0.61 -1.5
53,371 + Ac3H11_1849 0.70 +0.4
53,371 + Ac3H11_1849 0.70 +2.2
53,372 - Ac3H11_1849 0.70 -0.4
53,372 - Ac3H11_1849 0.70 +0.6
53,440 + Ac3H11_1849 0.76 -0.5
53,440 + Ac3H11_1849 0.76 -1.2
53,441 - Ac3H11_1849 0.76 -1.7
53,497 + Ac3H11_1849 0.81 +0.2
53,497 + Ac3H11_1849 0.81 -0.2
53,718 + -1.0
53,718 + -0.4
53,718 + +0.7
53,718 + -0.1
53,833 - +0.5
53,844 + -1.1
53,844 + +0.1
53,844 + -0.8
53,844 + +3.0
53,844 + -0.8
53,844 + +1.1
53,844 + +0.3
53,845 - +0.0
53,845 - +0.3
53,845 - -1.6
54,000 + Ac3H11_1850 0.14 -0.2
54,000 + Ac3H11_1850 0.14 +0.4
54,000 + Ac3H11_1850 0.14 -0.5
54,000 + Ac3H11_1850 0.14 -0.5
54,001 - Ac3H11_1850 0.14 +0.6
54,001 - Ac3H11_1850 0.14 +0.6
54,076 - Ac3H11_1850 0.22 -0.5
54,105 + Ac3H11_1850 0.25 -0.1
54,105 + Ac3H11_1850 0.25 +0.1
54,106 - Ac3H11_1850 0.25 +0.1
54,106 - Ac3H11_1850 0.25 -0.5
54,106 - Ac3H11_1850 0.25 -0.6
54,288 + +0.0
54,289 - Ac3H11_1850 0.43 +0.5
54,327 + Ac3H11_1850 0.47 +0.4
54,327 + Ac3H11_1850 0.47 -2.5
54,328 - Ac3H11_1850 0.47 +0.3
54,328 - Ac3H11_1850 0.47 -0.4
54,328 - Ac3H11_1850 0.47 +0.4
54,328 - Ac3H11_1850 0.47 +0.8
54,342 - Ac3H11_1850 0.49 +0.1
54,453 + Ac3H11_1850 0.60 -0.2
54,453 + Ac3H11_1850 0.60 -2.3
54,453 + Ac3H11_1850 0.60 +1.1
54,453 + Ac3H11_1850 0.60 +0.7
54,453 + Ac3H11_1850 0.60 +0.9
54,453 + Ac3H11_1850 0.60 -0.4
54,453 + Ac3H11_1850 0.60 +0.4
54,454 - Ac3H11_1850 0.60 -0.4
54,454 - Ac3H11_1850 0.60 -3.0
54,454 - Ac3H11_1850 0.60 -1.2
54,454 - Ac3H11_1850 0.60 +1.0
54,454 - Ac3H11_1850 0.60 +0.6
54,454 - Ac3H11_1850 0.60 +0.8
54,454 - Ac3H11_1850 0.60 +0.3

Or see this region's nucleotide sequence