Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_183

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_181 and Ac3H11_182 are separated by 144 nucleotidesAc3H11_182 and Ac3H11_183 are separated by 301 nucleotidesAc3H11_183 and Ac3H11_184 are separated by 135 nucleotidesAc3H11_184 and Ac3H11_185 are separated by 105 nucleotides Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156 _181 Ac3H11_182 - hypothetical protein, at 70,301 to 70,789 _182 Ac3H11_183 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 71,091 to 74,063 _183 Ac3H11_184 - hypothetical protein, at 74,199 to 74,573 _184 Ac3H11_185 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 74,679 to 76,364 _185 Position (kb) 71 72 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 70.157 kb on - strandat 70.170 kb on + strandat 70.170 kb on + strandat 70.170 kb on + strandat 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.531 kb on - strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.686 kb on + strand, within Ac3H11_182at 70.686 kb on + strand, within Ac3H11_182at 70.687 kb on - strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strandat 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.942 kb on + strandat 71.004 kb on - strandat 71.161 kb on + strandat 71.162 kb on - strandat 71.162 kb on - strandat 71.380 kb on + strandat 71.807 kb on - strand, within Ac3H11_183at 71.938 kb on + strand, within Ac3H11_183at 71.938 kb on + strand, within Ac3H11_183at 71.939 kb on - strand, within Ac3H11_183at 71.939 kb on - strand, within Ac3H11_183at 71.939 kb on - strand, within Ac3H11_183at 71.995 kb on + strand, within Ac3H11_183at 71.995 kb on + strand, within Ac3H11_183at 71.996 kb on - strand, within Ac3H11_183at 71.996 kb on - strand, within Ac3H11_183at 72.049 kb on + strand, within Ac3H11_183at 72.049 kb on + strand, within Ac3H11_183at 72.050 kb on - strand, within Ac3H11_183at 72.050 kb on - strand, within Ac3H11_183at 72.050 kb on - strand, within Ac3H11_183at 72.391 kb on + strand, within Ac3H11_183at 72.391 kb on + strand, within Ac3H11_183at 72.391 kb on + strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.392 kb on - strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.460 kb on + strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.461 kb on - strand, within Ac3H11_183at 72.598 kb on + strand, within Ac3H11_183at 72.598 kb on + strand, within Ac3H11_183at 72.599 kb on - strand, within Ac3H11_183at 72.599 kb on - strand, within Ac3H11_183at 72.685 kb on + strand, within Ac3H11_183at 72.685 kb on + strand, within Ac3H11_183at 72.686 kb on - strand, within Ac3H11_183at 72.686 kb on - strand, within Ac3H11_183at 72.874 kb on + strand, within Ac3H11_183at 72.875 kb on - strand, within Ac3H11_183at 73.067 kb on - strand, within Ac3H11_183at 73.073 kb on - strand, within Ac3H11_183at 73.079 kb on - strand, within Ac3H11_183at 73.096 kb on + strand, within Ac3H11_183at 73.096 kb on + strand, within Ac3H11_183at 73.097 kb on - strand, within Ac3H11_183at 73.097 kb on - strand, within Ac3H11_183at 73.310 kb on - strand, within Ac3H11_183at 73.310 kb on - strand, within Ac3H11_183at 73.445 kb on - strand, within Ac3H11_183at 73.679 kb on - strand, within Ac3H11_183at 73.679 kb on - strand, within Ac3H11_183at 73.723 kb on + strand, within Ac3H11_183at 73.723 kb on + strand, within Ac3H11_183at 73.724 kb on - strand, within Ac3H11_183at 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.928 kb on - strandat 73.928 kb on - strandat 73.983 kb on + strandat 74.047 kb on + strandat 74.048 kb on - strandat 74.048 kb on - strandat 74.101 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.434 kb on + strand, within Ac3H11_184at 74.434 kb on + strand, within Ac3H11_184at 74.776 kb on + strandat 74.776 kb on + strandat 74.776 kb on + strandat 74.776 kb on + strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 75.013 kb on + strand, within Ac3H11_185at 75.013 kb on + strand, within Ac3H11_185

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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70,157 - +0.8
70,170 + +0.3
70,170 + +0.5
70,170 + -1.1
70,506 + Ac3H11_182 0.42 +0.1
70,506 + Ac3H11_182 0.42 +0.0
70,506 + Ac3H11_182 0.42 -0.9
70,506 + Ac3H11_182 0.42 -0.4
70,507 - Ac3H11_182 0.42 -2.5
70,507 - Ac3H11_182 0.42 -0.2
70,507 - Ac3H11_182 0.42 -0.6
70,531 - Ac3H11_182 0.47 -0.6
70,578 + Ac3H11_182 0.57 -1.0
70,578 + Ac3H11_182 0.57 -1.0
70,578 + Ac3H11_182 0.57 +0.2
70,578 + Ac3H11_182 0.57 -0.0
70,578 + Ac3H11_182 0.57 -0.3
70,578 + Ac3H11_182 0.57 +0.4
70,578 + Ac3H11_182 0.57 +1.4
70,578 + Ac3H11_182 0.57 +0.6
70,578 + Ac3H11_182 0.57 +1.1
70,578 + Ac3H11_182 0.57 +0.5
70,578 + Ac3H11_182 0.57 -0.9
70,578 + Ac3H11_182 0.57 +1.3
70,579 - Ac3H11_182 0.57 +0.3
70,579 - Ac3H11_182 0.57 +0.3
70,579 - Ac3H11_182 0.57 +0.5
70,579 - Ac3H11_182 0.57 +1.5
70,579 - Ac3H11_182 0.57 -2.5
70,579 - Ac3H11_182 0.57 +0.1
70,579 - Ac3H11_182 0.57 -0.2
70,579 - Ac3H11_182 0.57 +0.4
70,579 - Ac3H11_182 0.57 -0.6
70,579 - Ac3H11_182 0.57 +1.9
70,579 - Ac3H11_182 0.57 -0.4
70,579 - Ac3H11_182 0.57 -0.2
70,579 - Ac3H11_182 0.57 -1.0
70,584 + Ac3H11_182 0.58 -1.1
70,584 + Ac3H11_182 0.58 +0.0
70,584 + Ac3H11_182 0.58 +1.7
70,584 + Ac3H11_182 0.58 -1.0
70,584 + Ac3H11_182 0.58 +2.7
70,584 + Ac3H11_182 0.58 +0.3
70,585 - Ac3H11_182 0.58 +1.7
70,585 - Ac3H11_182 0.58 +0.1
70,585 - Ac3H11_182 0.58 -2.1
70,686 + Ac3H11_182 0.79 +0.7
70,686 + Ac3H11_182 0.79 +0.4
70,687 - Ac3H11_182 0.79 -1.6
70,728 + Ac3H11_182 0.87 -1.9
70,728 + Ac3H11_182 0.87 +0.6
70,728 + +0.7
70,728 + Ac3H11_182 0.87 +1.1
70,728 + Ac3H11_182 0.87 +0.7
70,728 + Ac3H11_182 0.87 -0.6
70,728 + Ac3H11_182 0.87 +0.2
70,728 + Ac3H11_182 0.87 +1.0
70,728 + Ac3H11_182 0.87 -0.1
70,729 - Ac3H11_182 0.88 -0.3
70,729 - Ac3H11_182 0.88 +0.9
70,729 - Ac3H11_182 0.88 +0.6
70,729 - Ac3H11_182 0.88 -0.0
70,729 - Ac3H11_182 0.88 -0.2
70,729 - Ac3H11_182 0.88 +0.1
70,729 - Ac3H11_182 0.88 -2.2
70,828 + +0.4
70,828 + -0.1
70,828 + -1.1
70,828 + -1.5
70,828 + -1.5
70,828 + -1.3
70,828 + +0.9
70,828 + -0.7
70,828 + -1.1
70,828 + -0.2
70,828 + -1.1
70,829 - -0.4
70,829 - -0.8
70,829 - +0.5
70,829 - -0.6
70,829 - +0.1
70,829 - +0.5
70,829 - +1.2
70,829 - +1.3
70,829 - -0.6
70,829 - -2.2
70,829 - -0.6
70,942 + +0.0
71,004 - -1.3
71,161 + +0.9
71,162 - +1.9
71,162 - +1.3
71,380 + +0.0
71,807 - Ac3H11_183 0.24 +1.2
71,938 + Ac3H11_183 0.28 +0.1
71,938 + Ac3H11_183 0.28 -1.6
71,939 - Ac3H11_183 0.29 -2.0
71,939 - Ac3H11_183 0.29 -0.1
71,939 - Ac3H11_183 0.29 -1.2
71,995 + Ac3H11_183 0.30 -0.8
71,995 + Ac3H11_183 0.30 -1.6
71,996 - Ac3H11_183 0.30 +0.1
71,996 - Ac3H11_183 0.30 -0.1
72,049 + Ac3H11_183 0.32 -0.5
72,049 + Ac3H11_183 0.32 -0.5
72,050 - Ac3H11_183 0.32 +1.1
72,050 - Ac3H11_183 0.32 -0.5
72,050 - Ac3H11_183 0.32 -0.9
72,391 + Ac3H11_183 0.44 -0.7
72,391 + Ac3H11_183 0.44 -0.9
72,391 + Ac3H11_183 0.44 -0.7
72,392 - Ac3H11_183 0.44 -0.9
72,392 - Ac3H11_183 0.44 -0.0
72,392 - Ac3H11_183 0.44 -0.6
72,392 - Ac3H11_183 0.44 +0.8
72,392 - Ac3H11_183 0.44 -0.3
72,392 - Ac3H11_183 0.44 -1.3
72,392 - Ac3H11_183 0.44 +0.3
72,460 + Ac3H11_183 0.46 +0.4
72,460 + Ac3H11_183 0.46 +0.7
72,460 + Ac3H11_183 0.46 -0.1
72,460 + Ac3H11_183 0.46 +0.8
72,460 + Ac3H11_183 0.46 -0.2
72,460 + Ac3H11_183 0.46 -0.6
72,460 + Ac3H11_183 0.46 +0.8
72,461 - Ac3H11_183 0.46 -0.6
72,461 - Ac3H11_183 0.46 -1.1
72,461 - Ac3H11_183 0.46 -0.3
72,461 - Ac3H11_183 0.46 -1.4
72,461 - Ac3H11_183 0.46 +0.4
72,461 - Ac3H11_183 0.46 +0.0
72,461 - Ac3H11_183 0.46 +1.3
72,461 - Ac3H11_183 0.46 -1.6
72,598 + Ac3H11_183 0.51 -0.2
72,598 + Ac3H11_183 0.51 -0.3
72,599 - Ac3H11_183 0.51 -0.3
72,599 - Ac3H11_183 0.51 +0.9
72,685 + Ac3H11_183 0.54 +0.1
72,685 + Ac3H11_183 0.54 +0.0
72,686 - Ac3H11_183 0.54 +0.1
72,686 - Ac3H11_183 0.54 +0.3
72,874 + Ac3H11_183 0.60 +1.0
72,875 - Ac3H11_183 0.60 +1.2
73,067 - Ac3H11_183 0.66 +0.4
73,073 - Ac3H11_183 0.67 -0.3
73,079 - Ac3H11_183 0.67 -0.4
73,096 + Ac3H11_183 0.67 -0.1
73,096 + Ac3H11_183 0.67 +0.1
73,097 - Ac3H11_183 0.67 -0.6
73,097 - Ac3H11_183 0.67 +1.0
73,310 - Ac3H11_183 0.75 -0.3
73,310 - Ac3H11_183 0.75 -0.4
73,445 - Ac3H11_183 0.79 +1.7
73,679 - Ac3H11_183 0.87 +0.9
73,679 - Ac3H11_183 0.87 -0.4
73,723 + Ac3H11_183 0.89 +0.7
73,723 + Ac3H11_183 0.89 -1.3
73,724 - Ac3H11_183 0.89 -1.1
73,927 + -2.3
73,927 + +0.0
73,927 + -0.0
73,927 + +0.7
73,927 + +0.8
73,928 - +0.7
73,928 - -0.8
73,983 + -2.2
74,047 + +1.1
74,048 - -0.3
74,048 - +0.7
74,101 + -1.7
74,155 + -0.2
74,155 + -0.1
74,155 + -1.3
74,155 + +0.4
74,156 - -1.8
74,156 - -0.8
74,156 - +0.1
74,156 - -1.4
74,156 - -2.2
74,156 - +0.0
74,156 - -0.9
74,156 - -0.6
74,156 - -0.3
74,434 + Ac3H11_184 0.63 -2.4
74,434 + Ac3H11_184 0.63 -0.6
74,776 + -1.4
74,776 + -0.1
74,776 + -0.5
74,776 + -0.0
74,777 - +1.9
74,777 - +0.0
74,777 - -0.8
74,777 - +0.4
74,777 - +0.8
74,777 - +0.8
74,777 - +0.0
74,777 - -0.1
74,777 - +0.1
75,013 + Ac3H11_185 0.20 +1.8
75,013 + Ac3H11_185 0.20 -1.1

Or see this region's nucleotide sequence