Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1735

Experiment: phage 93.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1734 and Ac3H11_1735 are separated by 11 nucleotidesAc3H11_1735 and Ac3H11_1736 are separated by 9 nucleotidesAc3H11_1736 and Ac3H11_1737 are separated by 102 nucleotides Ac3H11_1734 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 341,773 to 343,566 _1734 Ac3H11_1735 - Spermidine synthase (EC 2.5.1.16), at 343,578 to 344,342 _1735 Ac3H11_1736 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase, at 344,352 to 344,921 _1736 Ac3H11_1737 - Putative deoxyribonuclease YjjV, at 345,024 to 345,860 _1737 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 342.905 kb on + strand, within Ac3H11_1734at 342.905 kb on + strand, within Ac3H11_1734at 342.905 kb on + strand, within Ac3H11_1734at 342.905 kb on + strand, within Ac3H11_1734at 343.040 kb on - strand, within Ac3H11_1734at 343.232 kb on + strand, within Ac3H11_1734at 343.233 kb on - strand, within Ac3H11_1734at 343.233 kb on - strand, within Ac3H11_1734at 343.295 kb on + strand, within Ac3H11_1734at 343.295 kb on + strand, within Ac3H11_1734at 343.296 kb on - strand, within Ac3H11_1734at 343.322 kb on + strand, within Ac3H11_1734at 343.322 kb on + strand, within Ac3H11_1734at 343.322 kb on + strand, within Ac3H11_1734at 343.712 kb on + strand, within Ac3H11_1735at 343.712 kb on + strand, within Ac3H11_1735at 343.712 kb on + strand, within Ac3H11_1735at 343.713 kb on - strand, within Ac3H11_1735at 343.713 kb on - strand, within Ac3H11_1735at 343.713 kb on - strand, within Ac3H11_1735at 343.909 kb on + strand, within Ac3H11_1735at 343.909 kb on + strand, within Ac3H11_1735at 343.910 kb on - strand, within Ac3H11_1735at 343.910 kb on - strand, within Ac3H11_1735at 344.200 kb on + strand, within Ac3H11_1735at 344.200 kb on + strand, within Ac3H11_1735at 344.201 kb on - strand, within Ac3H11_1735at 344.201 kb on - strand, within Ac3H11_1735at 344.201 kb on - strand, within Ac3H11_1735at 344.400 kb on - strandat 344.400 kb on - strandat 344.400 kb on - strandat 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.638 kb on + strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.639 kb on - strand, within Ac3H11_1736at 344.693 kb on - strand, within Ac3H11_1736at 344.745 kb on + strand, within Ac3H11_1736at 344.745 kb on + strand, within Ac3H11_1736at 344.745 kb on + strand, within Ac3H11_1736at 344.745 kb on + strand, within Ac3H11_1736at 344.746 kb on - strand, within Ac3H11_1736at 344.746 kb on - strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.776 kb on + strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.777 kb on - strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.779 kb on + strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.780 kb on - strand, within Ac3H11_1736at 344.983 kb on + strandat 344.984 kb on - strandat 344.984 kb on - strandat 344.984 kb on - strandat 344.984 kb on - strandat 344.984 kb on - strandat 344.992 kb on + strandat 345.214 kb on + strand, within Ac3H11_1737at 345.214 kb on + strand, within Ac3H11_1737at 345.214 kb on + strand, within Ac3H11_1737at 345.215 kb on - strand, within Ac3H11_1737at 345.215 kb on - strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.313 kb on + strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737at 345.314 kb on - strand, within Ac3H11_1737

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
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342,905 + Ac3H11_1734 0.63 -0.7
342,905 + Ac3H11_1734 0.63 -1.2
342,905 + Ac3H11_1734 0.63 -0.6
342,905 + Ac3H11_1734 0.63 +0.4
343,040 - Ac3H11_1734 0.71 -0.2
343,232 + Ac3H11_1734 0.81 +0.5
343,233 - Ac3H11_1734 0.81 +0.8
343,233 - Ac3H11_1734 0.81 -0.4
343,295 + Ac3H11_1734 0.85 +0.0
343,295 + Ac3H11_1734 0.85 -0.7
343,296 - Ac3H11_1734 0.85 +0.3
343,322 + Ac3H11_1734 0.86 +0.2
343,322 + Ac3H11_1734 0.86 -0.0
343,322 + Ac3H11_1734 0.86 -1.4
343,712 + Ac3H11_1735 0.18 -1.0
343,712 + Ac3H11_1735 0.18 +0.9
343,712 + Ac3H11_1735 0.18 -1.1
343,713 - Ac3H11_1735 0.18 -1.5
343,713 - Ac3H11_1735 0.18 +0.6
343,713 - Ac3H11_1735 0.18 -0.7
343,909 + Ac3H11_1735 0.43 -1.0
343,909 + Ac3H11_1735 0.43 -1.0
343,910 - Ac3H11_1735 0.43 +0.5
343,910 - Ac3H11_1735 0.43 -0.1
344,200 + Ac3H11_1735 0.81 -0.8
344,200 + Ac3H11_1735 0.81 -2.3
344,201 - Ac3H11_1735 0.81 -2.0
344,201 - Ac3H11_1735 0.81 +0.2
344,201 - Ac3H11_1735 0.81 +0.4
344,400 - +1.3
344,400 - +0.6
344,400 - +0.5
344,638 + Ac3H11_1736 0.50 -0.6
344,638 + Ac3H11_1736 0.50 +0.6
344,638 + Ac3H11_1736 0.50 -0.0
344,638 + Ac3H11_1736 0.50 -0.8
344,638 + Ac3H11_1736 0.50 +1.0
344,638 + Ac3H11_1736 0.50 -0.7
344,638 + Ac3H11_1736 0.50 +0.1
344,639 - Ac3H11_1736 0.50 -0.6
344,639 - Ac3H11_1736 0.50 +0.5
344,639 - Ac3H11_1736 0.50 -0.5
344,639 - Ac3H11_1736 0.50 -1.4
344,639 - Ac3H11_1736 0.50 +0.8
344,639 - Ac3H11_1736 0.50 -0.5
344,639 - Ac3H11_1736 0.50 +1.0
344,639 - Ac3H11_1736 0.50 -0.5
344,639 - Ac3H11_1736 0.50 +0.6
344,639 - Ac3H11_1736 0.50 +0.6
344,639 - Ac3H11_1736 0.50 -0.1
344,639 - Ac3H11_1736 0.50 +0.2
344,639 - Ac3H11_1736 0.50 -1.1
344,693 - Ac3H11_1736 0.60 -0.2
344,745 + Ac3H11_1736 0.69 -2.1
344,745 + Ac3H11_1736 0.69 -0.2
344,745 + Ac3H11_1736 0.69 +0.6
344,745 + Ac3H11_1736 0.69 -0.8
344,746 - Ac3H11_1736 0.69 +0.8
344,746 - Ac3H11_1736 0.69 -0.4
344,776 + Ac3H11_1736 0.74 -1.6
344,776 + Ac3H11_1736 0.74 +0.0
344,776 + Ac3H11_1736 0.74 -3.0
344,776 + Ac3H11_1736 0.74 -0.5
344,776 + Ac3H11_1736 0.74 +0.7
344,776 + Ac3H11_1736 0.74 -0.2
344,776 + Ac3H11_1736 0.74 -0.3
344,776 + Ac3H11_1736 0.74 +2.0
344,776 + Ac3H11_1736 0.74 -0.4
344,776 + Ac3H11_1736 0.74 -0.8
344,776 + Ac3H11_1736 0.74 +0.0
344,776 + Ac3H11_1736 0.74 +0.3
344,776 + Ac3H11_1736 0.74 -2.4
344,776 + Ac3H11_1736 0.74 -0.6
344,776 + Ac3H11_1736 0.74 -0.2
344,776 + Ac3H11_1736 0.74 -0.9
344,777 - Ac3H11_1736 0.75 -1.0
344,777 - Ac3H11_1736 0.75 +0.4
344,777 - Ac3H11_1736 0.75 +0.6
344,777 - Ac3H11_1736 0.75 -0.3
344,777 - Ac3H11_1736 0.75 +0.0
344,777 - Ac3H11_1736 0.75 -0.0
344,777 - Ac3H11_1736 0.75 +0.7
344,777 - Ac3H11_1736 0.75 +1.1
344,777 - Ac3H11_1736 0.75 -0.0
344,777 - Ac3H11_1736 0.75 -0.6
344,777 - Ac3H11_1736 0.75 -0.6
344,779 + Ac3H11_1736 0.75 -1.7
344,779 + Ac3H11_1736 0.75 +0.0
344,779 + Ac3H11_1736 0.75 +1.2
344,779 + Ac3H11_1736 0.75 -0.3
344,779 + Ac3H11_1736 0.75 +0.1
344,779 + Ac3H11_1736 0.75 -0.5
344,779 + Ac3H11_1736 0.75 -0.8
344,779 + Ac3H11_1736 0.75 +0.0
344,779 + Ac3H11_1736 0.75 +1.3
344,780 - Ac3H11_1736 0.75 +1.1
344,780 - Ac3H11_1736 0.75 -1.8
344,780 - Ac3H11_1736 0.75 +0.4
344,780 - Ac3H11_1736 0.75 +2.8
344,780 - Ac3H11_1736 0.75 -1.4
344,780 - Ac3H11_1736 0.75 -0.6
344,780 - Ac3H11_1736 0.75 +0.2
344,983 + -0.4
344,984 - -0.9
344,984 - -1.8
344,984 - -0.6
344,984 - -0.2
344,984 - +0.7
344,992 + -2.7
345,214 + Ac3H11_1737 0.23 +0.2
345,214 + Ac3H11_1737 0.23 -0.5
345,214 + Ac3H11_1737 0.23 +1.4
345,215 - Ac3H11_1737 0.23 -0.5
345,215 - Ac3H11_1737 0.23 +1.5
345,313 + Ac3H11_1737 0.35 -0.2
345,313 + Ac3H11_1737 0.35 +1.0
345,313 + Ac3H11_1737 0.35 +0.4
345,313 + Ac3H11_1737 0.35 -0.8
345,313 + Ac3H11_1737 0.35 +1.8
345,313 + Ac3H11_1737 0.35 -0.3
345,313 + Ac3H11_1737 0.35 -1.0
345,313 + Ac3H11_1737 0.35 -1.1
345,313 + Ac3H11_1737 0.35 -2.4
345,314 - Ac3H11_1737 0.35 -0.5
345,314 - Ac3H11_1737 0.35 -0.6
345,314 - Ac3H11_1737 0.35 -1.8
345,314 - Ac3H11_1737 0.35 -0.1
345,314 - Ac3H11_1737 0.35 -0.5
345,314 - Ac3H11_1737 0.35 -1.2
345,314 - Ac3H11_1737 0.35 -0.2
345,314 - Ac3H11_1737 0.35 -0.5

Or see this region's nucleotide sequence