Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_169

Experiment: phage 93.2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_167 and Ac3H11_168 are separated by 115 nucleotidesAc3H11_168 and Ac3H11_169 are separated by 4 nucleotidesAc3H11_169 and Ac3H11_170 are separated by 45 nucleotides Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524 _167 Ac3H11_168 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 55,640 to 56,044 _168 Ac3H11_169 - Albicidin resistance protein, at 56,049 to 57,101 _169 Ac3H11_170 - Glucans biosynthesis protein C (EC 2.1.-.-), at 57,147 to 58,427 _170 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 55.051 kb on + strand, within Ac3H11_167at 55.051 kb on + strand, within Ac3H11_167at 55.052 kb on - strand, within Ac3H11_167at 55.052 kb on - strand, within Ac3H11_167at 55.387 kb on + strandat 55.387 kb on + strandat 55.408 kb on + strandat 55.438 kb on + strandat 55.438 kb on + strandat 55.438 kb on + strandat 55.439 kb on - strandat 55.439 kb on - strandat 55.516 kb on + strandat 55.516 kb on + strandat 55.517 kb on - strandat 55.599 kb on + strandat 55.627 kb on + strandat 55.628 kb on - strandat 55.736 kb on + strand, within Ac3H11_168at 55.736 kb on + strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.800 kb on - strand, within Ac3H11_168at 55.800 kb on - strand, within Ac3H11_168at 55.842 kb on - strand, within Ac3H11_168at 56.091 kb on - strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.113 kb on - strandat 56.113 kb on - strandat 56.169 kb on + strand, within Ac3H11_169at 56.169 kb on + strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.434 kb on - strand, within Ac3H11_169at 56.434 kb on - strand, within Ac3H11_169at 56.443 kb on - strand, within Ac3H11_169at 56.583 kb on + strand, within Ac3H11_169at 56.716 kb on - strand, within Ac3H11_169at 57.022 kb on - strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.264 kb on + strandat 57.264 kb on + strandat 57.264 kb on + strandat 57.370 kb on + strand, within Ac3H11_170at 57.371 kb on - strand, within Ac3H11_170at 57.783 kb on + strand, within Ac3H11_170at 57.783 kb on + strand, within Ac3H11_170at 57.858 kb on + strand, within Ac3H11_170at 57.858 kb on + strand, within Ac3H11_170at 57.879 kb on + strand, within Ac3H11_170at 57.879 kb on + strand, within Ac3H11_170at 57.879 kb on + strand, within Ac3H11_170at 57.879 kb on + strand, within Ac3H11_170at 57.880 kb on - strand, within Ac3H11_170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
remove
55,051 + Ac3H11_167 0.84 +1.2
55,051 + Ac3H11_167 0.84 +1.0
55,052 - Ac3H11_167 0.84 -0.9
55,052 - Ac3H11_167 0.84 +0.9
55,387 + -0.6
55,387 + -0.2
55,408 + +0.6
55,438 + -2.0
55,438 + +0.6
55,438 + +0.5
55,439 - +0.6
55,439 - -1.3
55,516 + -0.2
55,516 + -0.5
55,517 - -1.6
55,599 + +0.7
55,627 + -1.1
55,628 - -0.6
55,736 + Ac3H11_168 0.24 -0.4
55,736 + Ac3H11_168 0.24 -0.3
55,737 - Ac3H11_168 0.24 +1.1
55,737 - Ac3H11_168 0.24 +0.3
55,737 - Ac3H11_168 0.24 -1.4
55,799 + Ac3H11_168 0.39 -2.6
55,799 + Ac3H11_168 0.39 +0.7
55,799 + Ac3H11_168 0.39 +0.1
55,799 + Ac3H11_168 0.39 -1.3
55,799 + Ac3H11_168 0.39 +0.2
55,799 + Ac3H11_168 0.39 -0.1
55,799 + Ac3H11_168 0.39 -1.5
55,799 + Ac3H11_168 0.39 -1.6
55,799 + Ac3H11_168 0.39 +0.7
55,800 - Ac3H11_168 0.40 -1.3
55,800 - Ac3H11_168 0.40 -1.6
55,842 - Ac3H11_168 0.50 -0.6
56,091 - +0.0
56,112 + -1.3
56,112 + -0.3
56,112 + +0.0
56,112 + +0.4
56,113 - +0.3
56,113 - -2.2
56,169 + Ac3H11_169 0.11 -0.5
56,169 + Ac3H11_169 0.11 -0.6
56,270 - Ac3H11_169 0.21 -0.8
56,270 - Ac3H11_169 0.21 -0.1
56,270 - Ac3H11_169 0.21 -0.2
56,270 - Ac3H11_169 0.21 -0.1
56,434 - Ac3H11_169 0.37 +0.2
56,434 - Ac3H11_169 0.37 +0.7
56,443 - Ac3H11_169 0.37 -1.0
56,583 + Ac3H11_169 0.51 -0.5
56,716 - Ac3H11_169 0.63 -0.3
57,022 - +1.4
57,147 - +0.3
57,147 - +0.1
57,147 - -2.0
57,147 - +1.0
57,264 + -0.9
57,264 + +0.4
57,264 + +0.4
57,370 + Ac3H11_170 0.17 -0.5
57,371 - Ac3H11_170 0.17 +0.4
57,783 + Ac3H11_170 0.50 -0.6
57,783 + Ac3H11_170 0.50 +0.9
57,858 + Ac3H11_170 0.56 +0.3
57,858 + Ac3H11_170 0.56 -0.8
57,879 + Ac3H11_170 0.57 -0.1
57,879 + Ac3H11_170 0.57 -0.4
57,879 + Ac3H11_170 0.57 -1.4
57,879 + Ac3H11_170 0.57 -0.1
57,880 - Ac3H11_170 0.57 +0.3

Or see this region's nucleotide sequence