Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_163 and Ac3H11_164 are separated by 89 nucleotides Ac3H11_164 and Ac3H11_165 are separated by 18 nucleotides Ac3H11_165 and Ac3H11_166 are separated by 86 nucleotides Ac3H11_166 and Ac3H11_167 are separated by 144 nucleotides
Ac3H11_163 - TRAP-type C4-dicarboxylate transport system, large permease component, at 49,281 to 50,558
_163
Ac3H11_164 - hypothetical protein, at 50,648 to 50,845
_164
Ac3H11_165 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 50,864 to 52,006
_165
Ac3H11_166 - Glycine cleavage system H protein, at 52,093 to 52,467
_166
Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524
_167
Position (kb)
50
51
52
53 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 49.965 kb on + strand, within Ac3H11_163 at 49.966 kb on - strand, within Ac3H11_163 at 49.966 kb on - strand, within Ac3H11_163 at 49.966 kb on - strand, within Ac3H11_163 at 50.013 kb on + strand, within Ac3H11_163 at 50.013 kb on + strand, within Ac3H11_163 at 50.014 kb on - strand, within Ac3H11_163 at 50.014 kb on - strand, within Ac3H11_163 at 50.040 kb on + strand, within Ac3H11_163 at 50.040 kb on + strand, within Ac3H11_163 at 50.067 kb on + strand, within Ac3H11_163 at 50.067 kb on + strand, within Ac3H11_163 at 50.067 kb on + strand, within Ac3H11_163 at 50.067 kb on + strand, within Ac3H11_163 at 50.067 kb on + strand, within Ac3H11_163 at 50.068 kb on - strand, within Ac3H11_163 at 50.488 kb on + strand at 50.489 kb on - strand at 50.489 kb on - strand at 50.508 kb on + strand at 50.508 kb on + strand at 50.508 kb on + strand at 50.508 kb on + strand at 50.508 kb on + strand at 50.509 kb on - strand at 50.509 kb on - strand at 50.509 kb on - strand at 50.509 kb on - strand at 50.548 kb on - strand at 50.556 kb on + strand at 50.557 kb on - strand at 50.557 kb on - strand at 50.563 kb on + strand at 50.564 kb on - strand at 50.792 kb on + strand, within Ac3H11_164 at 50.793 kb on - strand, within Ac3H11_164 at 50.966 kb on + strand at 50.967 kb on - strand at 51.264 kb on + strand, within Ac3H11_165 at 51.264 kb on + strand, within Ac3H11_165 at 51.264 kb on + strand, within Ac3H11_165 at 51.264 kb on + strand, within Ac3H11_165 at 51.264 kb on + strand, within Ac3H11_165 at 51.264 kb on + strand, within Ac3H11_165 at 51.265 kb on - strand, within Ac3H11_165 at 51.265 kb on - strand, within Ac3H11_165 at 51.450 kb on - strand, within Ac3H11_165 at 51.593 kb on + strand, within Ac3H11_165 at 51.853 kb on - strand, within Ac3H11_165 at 51.887 kb on + strand, within Ac3H11_165 at 51.887 kb on + strand, within Ac3H11_165 at 51.887 kb on + strand, within Ac3H11_165 at 51.887 kb on + strand, within Ac3H11_165 at 51.888 kb on - strand, within Ac3H11_165 at 52.046 kb on + strand at 52.047 kb on - strand at 52.047 kb on - strand at 52.047 kb on - strand at 52.047 kb on - strand at 52.063 kb on + strand at 52.064 kb on - strand at 52.068 kb on - strand at 52.068 kb on - strand at 52.288 kb on + strand, within Ac3H11_166 at 52.288 kb on + strand, within Ac3H11_166 at 52.288 kb on + strand, within Ac3H11_166 at 52.288 kb on + strand, within Ac3H11_166 at 52.288 kb on + strand, within Ac3H11_166 at 52.288 kb on + strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.289 kb on - strand, within Ac3H11_166 at 52.441 kb on + strand at 52.442 kb on - strand at 52.506 kb on + strand at 52.593 kb on - strand at 52.897 kb on + strand at 52.897 kb on + strand at 52.898 kb on - strand at 52.898 kb on - strand at 52.955 kb on - strand, within Ac3H11_167 at 52.963 kb on + strand, within Ac3H11_167 at 52.963 kb on + strand, within Ac3H11_167 at 52.964 kb on - strand, within Ac3H11_167 at 52.964 kb on - strand, within Ac3H11_167
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 49,965 + Ac3H11_163 0.54 +0.5 49,966 - Ac3H11_163 0.54 +0.7 49,966 - Ac3H11_163 0.54 -1.3 49,966 - Ac3H11_163 0.54 +0.0 50,013 + Ac3H11_163 0.57 +0.7 50,013 + Ac3H11_163 0.57 -0.3 50,014 - Ac3H11_163 0.57 -1.0 50,014 - Ac3H11_163 0.57 +0.1 50,040 + Ac3H11_163 0.59 +0.7 50,040 + Ac3H11_163 0.59 +1.7 50,067 + Ac3H11_163 0.62 -0.1 50,067 + Ac3H11_163 0.62 -0.2 50,067 + Ac3H11_163 0.62 -0.1 50,067 + Ac3H11_163 0.62 +0.0 50,067 + Ac3H11_163 0.62 +0.5 50,068 - Ac3H11_163 0.62 +0.1 50,488 + -0.2 50,489 - -0.8 50,489 - +1.3 50,508 + -1.1 50,508 + -0.7 50,508 + +0.4 50,508 + -0.9 50,508 + -0.6 50,509 - +0.7 50,509 - +0.3 50,509 - -0.9 50,509 - +1.1 50,548 - +0.2 50,556 + +0.1 50,557 - -1.9 50,557 - +3.1 50,563 + +0.5 50,564 - -0.3 50,792 + Ac3H11_164 0.73 -0.6 50,793 - Ac3H11_164 0.73 +0.3 50,966 + +0.4 50,967 - -0.3 51,264 + Ac3H11_165 0.35 -0.1 51,264 + Ac3H11_165 0.35 -0.6 51,264 + Ac3H11_165 0.35 -1.6 51,264 + Ac3H11_165 0.35 -0.1 51,264 + Ac3H11_165 0.35 -0.6 51,264 + Ac3H11_165 0.35 +0.5 51,265 - Ac3H11_165 0.35 -0.3 51,265 - Ac3H11_165 0.35 +2.1 51,450 - Ac3H11_165 0.51 +0.4 51,593 + Ac3H11_165 0.64 +0.4 51,853 - Ac3H11_165 0.87 -0.1 51,887 + Ac3H11_165 0.90 +0.4 51,887 + Ac3H11_165 0.90 +0.3 51,887 + Ac3H11_165 0.90 -1.3 51,887 + Ac3H11_165 0.90 +1.7 51,888 - Ac3H11_165 0.90 +0.3 52,046 + +1.4 52,047 - +0.7 52,047 - +0.7 52,047 - +1.1 52,047 - +1.2 52,063 + +0.7 52,064 - +0.8 52,068 - -0.6 52,068 - -0.7 52,288 + Ac3H11_166 0.52 -0.8 52,288 + Ac3H11_166 0.52 -1.5 52,288 + Ac3H11_166 0.52 +0.3 52,288 + Ac3H11_166 0.52 -0.2 52,288 + Ac3H11_166 0.52 +0.7 52,288 + Ac3H11_166 0.52 -0.1 52,289 - Ac3H11_166 0.52 -0.4 52,289 - Ac3H11_166 0.52 -1.5 52,289 - Ac3H11_166 0.52 -0.2 52,289 - Ac3H11_166 0.52 -0.2 52,289 - Ac3H11_166 0.52 +2.1 52,289 - Ac3H11_166 0.52 +1.2 52,441 + +1.1 52,442 - -0.3 52,506 + +0.4 52,593 - +0.1 52,897 + +0.1 52,897 + +0.6 52,898 - +0.4 52,898 - -1.1 52,955 - Ac3H11_167 0.12 +0.1 52,963 + Ac3H11_167 0.12 -0.1 52,963 + Ac3H11_167 0.12 +1.7 52,964 - Ac3H11_167 0.12 +3.1 52,964 - Ac3H11_167 0.12 +0.8
Or see this region's nucleotide sequence