Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_165

Experiment: phage 93.2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_163 and Ac3H11_164 are separated by 89 nucleotidesAc3H11_164 and Ac3H11_165 are separated by 18 nucleotidesAc3H11_165 and Ac3H11_166 are separated by 86 nucleotidesAc3H11_166 and Ac3H11_167 are separated by 144 nucleotides Ac3H11_163 - TRAP-type C4-dicarboxylate transport system, large permease component, at 49,281 to 50,558 _163 Ac3H11_164 - hypothetical protein, at 50,648 to 50,845 _164 Ac3H11_165 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 50,864 to 52,006 _165 Ac3H11_166 - Glycine cleavage system H protein, at 52,093 to 52,467 _166 Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524 _167 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.965 kb on + strand, within Ac3H11_163at 49.966 kb on - strand, within Ac3H11_163at 49.966 kb on - strand, within Ac3H11_163at 49.966 kb on - strand, within Ac3H11_163at 50.013 kb on + strand, within Ac3H11_163at 50.013 kb on + strand, within Ac3H11_163at 50.014 kb on - strand, within Ac3H11_163at 50.014 kb on - strand, within Ac3H11_163at 50.040 kb on + strand, within Ac3H11_163at 50.040 kb on + strand, within Ac3H11_163at 50.067 kb on + strand, within Ac3H11_163at 50.067 kb on + strand, within Ac3H11_163at 50.067 kb on + strand, within Ac3H11_163at 50.067 kb on + strand, within Ac3H11_163at 50.067 kb on + strand, within Ac3H11_163at 50.068 kb on - strand, within Ac3H11_163at 50.488 kb on + strandat 50.489 kb on - strandat 50.489 kb on - strandat 50.508 kb on + strandat 50.508 kb on + strandat 50.508 kb on + strandat 50.508 kb on + strandat 50.508 kb on + strandat 50.509 kb on - strandat 50.509 kb on - strandat 50.509 kb on - strandat 50.509 kb on - strandat 50.548 kb on - strandat 50.556 kb on + strandat 50.557 kb on - strandat 50.557 kb on - strandat 50.563 kb on + strandat 50.564 kb on - strandat 50.792 kb on + strand, within Ac3H11_164at 50.793 kb on - strand, within Ac3H11_164at 50.966 kb on + strandat 50.967 kb on - strandat 51.264 kb on + strand, within Ac3H11_165at 51.264 kb on + strand, within Ac3H11_165at 51.264 kb on + strand, within Ac3H11_165at 51.264 kb on + strand, within Ac3H11_165at 51.264 kb on + strand, within Ac3H11_165at 51.264 kb on + strand, within Ac3H11_165at 51.265 kb on - strand, within Ac3H11_165at 51.265 kb on - strand, within Ac3H11_165at 51.450 kb on - strand, within Ac3H11_165at 51.593 kb on + strand, within Ac3H11_165at 51.853 kb on - strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.888 kb on - strand, within Ac3H11_165at 52.046 kb on + strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.063 kb on + strandat 52.064 kb on - strandat 52.068 kb on - strandat 52.068 kb on - strandat 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.441 kb on + strandat 52.442 kb on - strandat 52.506 kb on + strandat 52.593 kb on - strandat 52.897 kb on + strandat 52.897 kb on + strandat 52.898 kb on - strandat 52.898 kb on - strandat 52.955 kb on - strand, within Ac3H11_167at 52.963 kb on + strand, within Ac3H11_167at 52.963 kb on + strand, within Ac3H11_167at 52.964 kb on - strand, within Ac3H11_167at 52.964 kb on - strand, within Ac3H11_167

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.2
remove
49,965 + Ac3H11_163 0.54 +0.5
49,966 - Ac3H11_163 0.54 +0.7
49,966 - Ac3H11_163 0.54 -1.3
49,966 - Ac3H11_163 0.54 +0.0
50,013 + Ac3H11_163 0.57 +0.7
50,013 + Ac3H11_163 0.57 -0.3
50,014 - Ac3H11_163 0.57 -1.0
50,014 - Ac3H11_163 0.57 +0.1
50,040 + Ac3H11_163 0.59 +0.7
50,040 + Ac3H11_163 0.59 +1.7
50,067 + Ac3H11_163 0.62 -0.1
50,067 + Ac3H11_163 0.62 -0.2
50,067 + Ac3H11_163 0.62 -0.1
50,067 + Ac3H11_163 0.62 +0.0
50,067 + Ac3H11_163 0.62 +0.5
50,068 - Ac3H11_163 0.62 +0.1
50,488 + -0.2
50,489 - -0.8
50,489 - +1.3
50,508 + -1.1
50,508 + -0.7
50,508 + +0.4
50,508 + -0.9
50,508 + -0.6
50,509 - +0.7
50,509 - +0.3
50,509 - -0.9
50,509 - +1.1
50,548 - +0.2
50,556 + +0.1
50,557 - -1.9
50,557 - +3.1
50,563 + +0.5
50,564 - -0.3
50,792 + Ac3H11_164 0.73 -0.6
50,793 - Ac3H11_164 0.73 +0.3
50,966 + +0.4
50,967 - -0.3
51,264 + Ac3H11_165 0.35 -0.1
51,264 + Ac3H11_165 0.35 -0.6
51,264 + Ac3H11_165 0.35 -1.6
51,264 + Ac3H11_165 0.35 -0.1
51,264 + Ac3H11_165 0.35 -0.6
51,264 + Ac3H11_165 0.35 +0.5
51,265 - Ac3H11_165 0.35 -0.3
51,265 - Ac3H11_165 0.35 +2.1
51,450 - Ac3H11_165 0.51 +0.4
51,593 + Ac3H11_165 0.64 +0.4
51,853 - Ac3H11_165 0.87 -0.1
51,887 + Ac3H11_165 0.90 +0.4
51,887 + Ac3H11_165 0.90 +0.3
51,887 + Ac3H11_165 0.90 -1.3
51,887 + Ac3H11_165 0.90 +1.7
51,888 - Ac3H11_165 0.90 +0.3
52,046 + +1.4
52,047 - +0.7
52,047 - +0.7
52,047 - +1.1
52,047 - +1.2
52,063 + +0.7
52,064 - +0.8
52,068 - -0.6
52,068 - -0.7
52,288 + Ac3H11_166 0.52 -0.8
52,288 + Ac3H11_166 0.52 -1.5
52,288 + Ac3H11_166 0.52 +0.3
52,288 + Ac3H11_166 0.52 -0.2
52,288 + Ac3H11_166 0.52 +0.7
52,288 + Ac3H11_166 0.52 -0.1
52,289 - Ac3H11_166 0.52 -0.4
52,289 - Ac3H11_166 0.52 -1.5
52,289 - Ac3H11_166 0.52 -0.2
52,289 - Ac3H11_166 0.52 -0.2
52,289 - Ac3H11_166 0.52 +2.1
52,289 - Ac3H11_166 0.52 +1.2
52,441 + +1.1
52,442 - -0.3
52,506 + +0.4
52,593 - +0.1
52,897 + +0.1
52,897 + +0.6
52,898 - +0.4
52,898 - -1.1
52,955 - Ac3H11_167 0.12 +0.1
52,963 + Ac3H11_167 0.12 -0.1
52,963 + Ac3H11_167 0.12 +1.7
52,964 - Ac3H11_167 0.12 +3.1
52,964 - Ac3H11_167 0.12 +0.8

Or see this region's nucleotide sequence