Experiment: phage 93.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1159 and Ac3H11_1160 overlap by 4 nucleotides Ac3H11_1160 and Ac3H11_1161 are separated by 93 nucleotides Ac3H11_1161 and Ac3H11_1162 overlap by 48 nucleotides
Ac3H11_1159 - Sensory histidine kinase QseC, at 111,548 to 112,969
_1159
Ac3H11_1160 - probable two-component system response regulator, at 112,966 to 113,631
_1160
Ac3H11_1161 - hypothetical protein, at 113,725 to 113,877
_1161
Ac3H11_1162 - putative peptidase, at 113,830 to 115,740
_1162
Position (kb) 112
113
114 Strain fitness (log2 ratio) -1
0
1
2 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.401 kb on - strand, within Ac3H11_1159 at 112.401 kb on - strand, within Ac3H11_1159 at 112.425 kb on + strand, within Ac3H11_1159 at 112.449 kb on + strand, within Ac3H11_1159 at 112.449 kb on + strand, within Ac3H11_1159 at 112.521 kb on + strand, within Ac3H11_1159 at 112.521 kb on + strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.628 kb on - strand, within Ac3H11_1159 at 112.830 kb on + strand at 112.830 kb on + strand at 112.830 kb on + strand at 112.831 kb on - strand at 112.845 kb on + strand at 112.982 kb on + strand at 114.258 kb on + strand, within Ac3H11_1162 at 114.277 kb on + strand, within Ac3H11_1162 at 114.477 kb on + strand, within Ac3H11_1162 at 114.477 kb on + strand, within Ac3H11_1162 at 114.478 kb on - strand, within Ac3H11_1162
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.2 remove 112,400 + Ac3H11_1159 0.60 +0.9 112,400 + Ac3H11_1159 0.60 +0.2 112,400 + Ac3H11_1159 0.60 +2.0 112,400 + Ac3H11_1159 0.60 +0.8 112,400 + Ac3H11_1159 0.60 +0.4 112,401 - Ac3H11_1159 0.60 -1.7 112,401 - Ac3H11_1159 0.60 +0.8 112,425 + Ac3H11_1159 0.62 +1.2 112,449 + Ac3H11_1159 0.63 -0.1 112,449 + Ac3H11_1159 0.63 +0.5 112,521 + Ac3H11_1159 0.68 +0.7 112,521 + Ac3H11_1159 0.68 -1.2 112,522 - Ac3H11_1159 0.68 +0.0 112,522 - Ac3H11_1159 0.68 +0.0 112,522 - Ac3H11_1159 0.68 -1.4 112,628 - Ac3H11_1159 0.76 -0.7 112,830 + +0.6 112,830 + +0.2 112,830 + -1.3 112,831 - -0.9 112,845 + +0.1 112,982 + -0.3 114,258 + Ac3H11_1162 0.22 +0.7 114,277 + Ac3H11_1162 0.23 -0.1 114,477 + Ac3H11_1162 0.34 -0.4 114,477 + Ac3H11_1162 0.34 +1.4 114,478 - Ac3H11_1162 0.34 +0.5
Or see this region's nucleotide sequence