Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_934

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_933 and Ac3H11_1044 are separated by 94 nucleotidesAc3H11_1044 and Ac3H11_934 are separated by 78 nucleotidesAc3H11_934 and Ac3H11_935 are separated by 122 nucleotidesAc3H11_935 and Ac3H11_936 are separated by 102 nucleotides Ac3H11_933 - Probable transmembrane drug efflux protein, at 47,990 to 51,172 _933 Ac3H11_1044 - tRNA-Leu-TAG, at 51,267 to 51,350 _1044 Ac3H11_934 - Cell division trigger factor (EC 5.2.1.8), at 51,429 to 52,742 _934 Ac3H11_935 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 52,865 to 53,473 _935 Ac3H11_936 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 53,576 to 54,841 _936 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.501 kb on + strand, within Ac3H11_933at 50.501 kb on + strand, within Ac3H11_933at 50.502 kb on - strand, within Ac3H11_933at 50.502 kb on - strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.201 kb on + strandat 51.201 kb on + strandat 51.202 kb on - strandat 51.260 kb on + strandat 51.261 kb on - strandat 51.261 kb on - strandat 51.287 kb on - strand, within Ac3H11_1044at 51.287 kb on - strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.424 kb on + strandat 51.424 kb on + strandat 51.424 kb on + strandat 51.425 kb on - strandat 51.425 kb on - strandat 51.437 kb on + strandat 51.437 kb on + strandat 51.438 kb on - strandat 51.600 kb on + strand, within Ac3H11_934at 51.600 kb on + strand, within Ac3H11_934at 51.601 kb on - strand, within Ac3H11_934at 51.606 kb on + strand, within Ac3H11_934at 51.606 kb on + strand, within Ac3H11_934at 51.618 kb on + strand, within Ac3H11_934at 51.618 kb on + strand, within Ac3H11_934at 51.619 kb on - strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934at 52.575 kb on + strand, within Ac3H11_934at 52.575 kb on + strand, within Ac3H11_934at 52.576 kb on - strand, within Ac3H11_934at 52.576 kb on - strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.606 kb on - strand, within Ac3H11_934at 52.606 kb on - strand, within Ac3H11_934at 52.838 kb on + strandat 52.839 kb on - strandat 52.843 kb on + strandat 53.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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50,501 + Ac3H11_933 0.79 -0.0
50,501 + Ac3H11_933 0.79 -0.6
50,502 - Ac3H11_933 0.79 +0.8
50,502 - Ac3H11_933 0.79 +0.3
50,835 + Ac3H11_933 0.89 -0.5
50,835 + Ac3H11_933 0.89 -0.1
50,835 + Ac3H11_933 0.89 +0.3
50,835 + Ac3H11_933 0.89 -0.9
51,116 + +0.6
51,116 + +0.4
51,116 + +0.7
51,116 + -1.3
51,116 + -0.8
51,116 + -0.5
51,116 + +0.5
51,117 - -2.8
51,117 - -2.3
51,117 - -1.6
51,117 - +0.3
51,117 - -2.7
51,117 - -1.1
51,117 - +0.1
51,117 - +0.0
51,117 - -0.9
51,117 - +0.0
51,117 - +1.0
51,117 - -1.7
51,117 - -0.7
51,201 + -0.5
51,201 + -0.9
51,202 - -0.7
51,260 + +0.5
51,261 - -0.9
51,261 - -2.5
51,287 - Ac3H11_1044 0.24 +1.9
51,287 - Ac3H11_1044 0.24 +0.1
51,301 + Ac3H11_1044 0.40 -1.9
51,301 + Ac3H11_1044 0.40 -2.7
51,301 + Ac3H11_1044 0.40 -0.6
51,301 + Ac3H11_1044 0.40 -1.3
51,301 + Ac3H11_1044 0.40 -2.1
51,302 - Ac3H11_1044 0.42 -0.9
51,302 - Ac3H11_1044 0.42 +0.3
51,302 - Ac3H11_1044 0.42 -0.3
51,302 - Ac3H11_1044 0.42 +0.9
51,302 - Ac3H11_1044 0.42 -1.8
51,302 - Ac3H11_1044 0.42 -0.9
51,415 + -0.5
51,415 + -1.0
51,415 + +0.5
51,415 + +0.9
51,415 + +1.2
51,415 + -0.1
51,416 - +0.4
51,416 - +1.8
51,416 - +0.7
51,416 - +1.3
51,416 - +0.1
51,416 - -0.1
51,416 - +1.2
51,416 - +0.1
51,416 - +0.1
51,424 + -0.4
51,424 + +0.6
51,424 + -0.8
51,425 - +0.3
51,425 - +1.5
51,437 + +1.5
51,437 + +0.4
51,438 - -0.1
51,600 + Ac3H11_934 0.13 +1.2
51,600 + Ac3H11_934 0.13 +0.8
51,601 - Ac3H11_934 0.13 -0.8
51,606 + Ac3H11_934 0.13 -1.5
51,606 + Ac3H11_934 0.13 +2.9
51,618 + Ac3H11_934 0.14 +1.6
51,618 + Ac3H11_934 0.14 +1.2
51,619 - Ac3H11_934 0.14 +2.1
52,095 + Ac3H11_934 0.51 +0.9
52,095 + Ac3H11_934 0.51 +0.1
52,095 + Ac3H11_934 0.51 -1.1
52,095 + Ac3H11_934 0.51 +0.9
52,096 - Ac3H11_934 0.51 +1.2
52,096 - Ac3H11_934 0.51 +1.9
52,575 + Ac3H11_934 0.87 +0.1
52,575 + Ac3H11_934 0.87 -0.1
52,576 - Ac3H11_934 0.87 +0.4
52,576 - Ac3H11_934 0.87 +0.8
52,605 + Ac3H11_934 0.89 +1.5
52,605 + Ac3H11_934 0.89 +0.6
52,605 + Ac3H11_934 0.89 +0.2
52,605 + Ac3H11_934 0.89 +1.5
52,605 + Ac3H11_934 0.89 +2.2
52,606 - Ac3H11_934 0.90 -0.7
52,606 - Ac3H11_934 0.90 +0.3
52,838 + -0.6
52,839 - -0.9
52,843 + -0.1
53,525 + +0.2

Or see this region's nucleotide sequence