Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_905 and Ac3H11_906 overlap by 4 nucleotides Ac3H11_906 and Ac3H11_907 are separated by 154 nucleotides Ac3H11_907 and Ac3H11_908 are separated by 136 nucleotides Ac3H11_908 and Ac3H11_909 are separated by 56 nucleotides
Ac3H11_905 - Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup, at 19,736 to 20,737
_905
Ac3H11_906 - Glutathione S-transferase domain protein, at 20,734 to 21,429
_906
Ac3H11_907 - hypothetical protein, at 21,584 to 21,802
_907
Ac3H11_908 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 21,939 to 22,475
_908
Ac3H11_909 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 22,532 to 23,656
_909
Position (kb) 21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 20.755 kb on + strand at 20.755 kb on + strand at 20.755 kb on + strand at 20.755 kb on + strand at 20.755 kb on + strand at 20.756 kb on - strand at 20.756 kb on - strand at 20.756 kb on - strand at 20.776 kb on + strand at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.069 kb on + strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.070 kb on - strand, within Ac3H11_906 at 21.684 kb on + strand, within Ac3H11_907 at 21.684 kb on + strand, within Ac3H11_907 at 21.685 kb on - strand, within Ac3H11_907 at 21.952 kb on + strand at 22.800 kb on + strand, within Ac3H11_909 at 22.800 kb on + strand, within Ac3H11_909 at 22.801 kb on - strand, within Ac3H11_909
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 20,755 + -1.0 20,755 + -0.3 20,755 + -0.3 20,755 + +0.8 20,755 + +0.3 20,756 - -1.3 20,756 - -0.9 20,756 - -0.2 20,776 + -0.2 21,069 + Ac3H11_906 0.48 -1.0 21,069 + Ac3H11_906 0.48 -1.8 21,069 + Ac3H11_906 0.48 +0.7 21,069 + Ac3H11_906 0.48 +0.2 21,069 + Ac3H11_906 0.48 -0.6 21,069 + Ac3H11_906 0.48 -1.6 21,069 + Ac3H11_906 0.48 -0.8 21,069 + Ac3H11_906 0.48 -0.2 21,069 + Ac3H11_906 0.48 -1.3 21,069 + Ac3H11_906 0.48 -0.5 21,070 - Ac3H11_906 0.48 +1.0 21,070 - Ac3H11_906 0.48 +0.1 21,070 - Ac3H11_906 0.48 -0.5 21,070 - Ac3H11_906 0.48 -1.5 21,070 - Ac3H11_906 0.48 +1.5 21,070 - Ac3H11_906 0.48 -0.1 21,070 - Ac3H11_906 0.48 -2.1 21,684 + Ac3H11_907 0.46 -1.3 21,684 + Ac3H11_907 0.46 -0.5 21,685 - Ac3H11_907 0.46 -0.1 21,952 + -0.6 22,800 + Ac3H11_909 0.24 +0.5 22,800 + Ac3H11_909 0.24 -0.1 22,801 - Ac3H11_909 0.24 +0.1
Or see this region's nucleotide sequence