Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_898

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_897 and Ac3H11_898 are separated by 358 nucleotidesAc3H11_898 and Ac3H11_899 are separated by 17 nucleotides Ac3H11_897 - Beta-lactamase (EC 3.5.2.6), at 6,700 to 8,571 _897 Ac3H11_898 - hypothetical protein, at 8,930 to 9,181 _898 Ac3H11_899 - Cell division protein FtsH (EC 3.4.24.-), at 9,199 to 11,226 _899 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 8.155 kb on + strand, within Ac3H11_897at 8.185 kb on + strand, within Ac3H11_897at 8.221 kb on + strand, within Ac3H11_897at 8.644 kb on + strandat 8.644 kb on + strandat 8.645 kb on - strandat 8.645 kb on - strandat 8.764 kb on + strandat 8.765 kb on - strandat 8.765 kb on - strandat 8.765 kb on - strandat 8.895 kb on - strandat 8.895 kb on - strandat 9.198 kb on + strandat 9.198 kb on + strandat 9.198 kb on + strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.379 kb on + strandat 9.380 kb on - strandat 9.380 kb on - strandat 9.638 kb on + strand, within Ac3H11_899at 9.638 kb on + strand, within Ac3H11_899at 9.638 kb on + strand, within Ac3H11_899at 9.673 kb on + strand, within Ac3H11_899at 9.766 kb on + strand, within Ac3H11_899at 9.766 kb on + strand, within Ac3H11_899at 9.766 kb on + strand, within Ac3H11_899at 9.767 kb on - strand, within Ac3H11_899at 9.767 kb on - strand, within Ac3H11_899at 9.767 kb on - strand, within Ac3H11_899at 9.833 kb on + strand, within Ac3H11_899at 9.834 kb on - strand, within Ac3H11_899at 9.973 kb on + strand, within Ac3H11_899at 9.973 kb on + strand, within Ac3H11_899at 9.974 kb on - strand, within Ac3H11_899at 9.974 kb on - strand, within Ac3H11_899at 10.018 kb on + strand, within Ac3H11_899at 10.018 kb on + strand, within Ac3H11_899at 10.018 kb on + strand, within Ac3H11_899at 10.019 kb on - strand, within Ac3H11_899at 10.174 kb on + strand, within Ac3H11_899at 10.175 kb on - strand, within Ac3H11_899at 10.175 kb on - strand, within Ac3H11_899

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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7,993 + Ac3H11_897 0.69 -0.5
7,993 + Ac3H11_897 0.69 +3.0
7,993 + Ac3H11_897 0.69 +0.5
7,993 + Ac3H11_897 0.69 +0.3
7,993 + Ac3H11_897 0.69 -0.1
7,994 - Ac3H11_897 0.69 -1.8
7,994 - Ac3H11_897 0.69 +0.9
7,994 - Ac3H11_897 0.69 -0.8
7,994 - Ac3H11_897 0.69 -2.5
7,994 - Ac3H11_897 0.69 +0.1
7,994 - Ac3H11_897 0.69 +0.1
8,155 + Ac3H11_897 0.78 -0.7
8,185 + Ac3H11_897 0.79 -0.2
8,221 + Ac3H11_897 0.81 +2.2
8,644 + +0.4
8,644 + +1.0
8,645 - -0.2
8,645 - -0.9
8,764 + -0.0
8,765 - -0.4
8,765 - -0.2
8,765 - +0.1
8,895 - -0.1
8,895 - +1.1
9,198 + -0.4
9,198 + +0.2
9,198 + +2.2
9,199 - -0.1
9,199 - +1.9
9,199 - -0.1
9,199 - -0.5
9,379 + +0.6
9,380 - -0.8
9,380 - -0.0
9,638 + Ac3H11_899 0.22 +0.9
9,638 + Ac3H11_899 0.22 +0.8
9,638 + Ac3H11_899 0.22 +0.9
9,673 + Ac3H11_899 0.23 +0.1
9,766 + Ac3H11_899 0.28 -0.0
9,766 + Ac3H11_899 0.28 +0.3
9,766 + Ac3H11_899 0.28 +0.7
9,767 - Ac3H11_899 0.28 -1.6
9,767 - Ac3H11_899 0.28 -2.5
9,767 - Ac3H11_899 0.28 +1.1
9,833 + Ac3H11_899 0.31 -1.0
9,834 - Ac3H11_899 0.31 +0.8
9,973 + Ac3H11_899 0.38 -1.1
9,973 + Ac3H11_899 0.38 -0.5
9,974 - Ac3H11_899 0.38 -0.6
9,974 - Ac3H11_899 0.38 -2.4
10,018 + Ac3H11_899 0.40 -0.5
10,018 + Ac3H11_899 0.40 +0.7
10,018 + Ac3H11_899 0.40 -1.8
10,019 - Ac3H11_899 0.40 +0.3
10,174 + Ac3H11_899 0.48 -1.2
10,175 - Ac3H11_899 0.48 +0.7
10,175 - Ac3H11_899 0.48 +1.0

Or see this region's nucleotide sequence