Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_897

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_896 and Ac3H11_897 are separated by 93 nucleotidesAc3H11_897 and Ac3H11_898 are separated by 358 nucleotidesAc3H11_898 and Ac3H11_899 are separated by 17 nucleotides Ac3H11_896 - macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif., at 2,494 to 6,606 _896 Ac3H11_897 - Beta-lactamase (EC 3.5.2.6), at 6,700 to 8,571 _897 Ac3H11_898 - hypothetical protein, at 8,930 to 9,181 _898 Ac3H11_899 - Cell division protein FtsH (EC 3.4.24.-), at 9,199 to 11,226 _899 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6.065 kb on + strand, within Ac3H11_896at 6.065 kb on + strand, within Ac3H11_896at 6.065 kb on + strand, within Ac3H11_896at 6.128 kb on + strand, within Ac3H11_896at 6.634 kb on + strandat 6.634 kb on + strandat 6.634 kb on + strandat 6.634 kb on + strandat 6.635 kb on - strandat 6.635 kb on - strandat 6.749 kb on + strandat 6.887 kb on + strandat 6.888 kb on - strand, within Ac3H11_897at 7.259 kb on + strand, within Ac3H11_897at 7.259 kb on + strandat 7.259 kb on + strand, within Ac3H11_897at 7.260 kb on - strand, within Ac3H11_897at 7.260 kb on - strand, within Ac3H11_897at 7.315 kb on + strand, within Ac3H11_897at 7.315 kb on + strand, within Ac3H11_897at 7.315 kb on + strand, within Ac3H11_897at 7.316 kb on - strand, within Ac3H11_897at 7.316 kb on - strand, within Ac3H11_897at 7.375 kb on + strand, within Ac3H11_897at 7.474 kb on + strand, within Ac3H11_897at 7.475 kb on - strand, within Ac3H11_897at 7.475 kb on - strand, within Ac3H11_897at 7.475 kb on - strand, within Ac3H11_897at 7.792 kb on + strand, within Ac3H11_897at 7.792 kb on + strand, within Ac3H11_897at 7.792 kb on + strand, within Ac3H11_897at 7.792 kb on + strand, within Ac3H11_897at 7.792 kb on + strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.793 kb on - strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.993 kb on + strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 7.994 kb on - strand, within Ac3H11_897at 8.155 kb on + strand, within Ac3H11_897at 8.185 kb on + strand, within Ac3H11_897at 8.221 kb on + strand, within Ac3H11_897at 8.644 kb on + strandat 8.644 kb on + strandat 8.645 kb on - strandat 8.645 kb on - strandat 8.764 kb on + strandat 8.765 kb on - strandat 8.765 kb on - strandat 8.765 kb on - strandat 8.895 kb on - strandat 8.895 kb on - strandat 9.198 kb on + strandat 9.198 kb on + strandat 9.198 kb on + strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.199 kb on - strandat 9.379 kb on + strandat 9.380 kb on - strandat 9.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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6,065 + Ac3H11_896 0.87 -0.4
6,065 + Ac3H11_896 0.87 -1.8
6,065 + Ac3H11_896 0.87 +0.4
6,128 + Ac3H11_896 0.88 +0.5
6,634 + -0.9
6,634 + +0.1
6,634 + -0.0
6,634 + +0.1
6,635 - +0.5
6,635 - -1.5
6,749 + +1.0
6,887 + +0.3
6,888 - Ac3H11_897 0.10 -0.1
7,259 + Ac3H11_897 0.30 -0.9
7,259 + -0.1
7,259 + Ac3H11_897 0.30 +0.2
7,260 - Ac3H11_897 0.30 +0.6
7,260 - Ac3H11_897 0.30 +0.7
7,315 + Ac3H11_897 0.33 -2.5
7,315 + Ac3H11_897 0.33 +1.7
7,315 + Ac3H11_897 0.33 -1.1
7,316 - Ac3H11_897 0.33 +0.9
7,316 - Ac3H11_897 0.33 -1.7
7,375 + Ac3H11_897 0.36 -0.2
7,474 + Ac3H11_897 0.41 +0.7
7,475 - Ac3H11_897 0.41 -1.3
7,475 - Ac3H11_897 0.41 -1.2
7,475 - Ac3H11_897 0.41 -0.2
7,792 + Ac3H11_897 0.58 -0.3
7,792 + Ac3H11_897 0.58 +1.1
7,792 + Ac3H11_897 0.58 +0.3
7,792 + Ac3H11_897 0.58 +3.5
7,792 + Ac3H11_897 0.58 -1.6
7,793 - Ac3H11_897 0.58 -1.3
7,793 - Ac3H11_897 0.58 +0.4
7,793 - Ac3H11_897 0.58 -3.2
7,793 - Ac3H11_897 0.58 -2.5
7,793 - Ac3H11_897 0.58 -2.0
7,793 - Ac3H11_897 0.58 +0.7
7,793 - Ac3H11_897 0.58 +0.7
7,993 + Ac3H11_897 0.69 -0.5
7,993 + Ac3H11_897 0.69 +3.0
7,993 + Ac3H11_897 0.69 +0.5
7,993 + Ac3H11_897 0.69 +0.3
7,993 + Ac3H11_897 0.69 -0.1
7,994 - Ac3H11_897 0.69 -1.8
7,994 - Ac3H11_897 0.69 +0.9
7,994 - Ac3H11_897 0.69 -0.8
7,994 - Ac3H11_897 0.69 -2.5
7,994 - Ac3H11_897 0.69 +0.1
7,994 - Ac3H11_897 0.69 +0.1
8,155 + Ac3H11_897 0.78 -0.7
8,185 + Ac3H11_897 0.79 -0.2
8,221 + Ac3H11_897 0.81 +2.2
8,644 + +0.4
8,644 + +1.0
8,645 - -0.2
8,645 - -0.9
8,764 + -0.0
8,765 - -0.4
8,765 - -0.2
8,765 - +0.1
8,895 - -0.1
8,895 - +1.1
9,198 + -0.4
9,198 + +0.2
9,198 + +2.2
9,199 - -0.1
9,199 - +1.9
9,199 - -0.1
9,199 - -0.5
9,379 + +0.6
9,380 - -0.8
9,380 - -0.0

Or see this region's nucleotide sequence