Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_693

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_691 and Ac3H11_692 are separated by 1 nucleotidesAc3H11_692 and Ac3H11_693 are separated by 2 nucleotidesAc3H11_693 and Ac3H11_694 are separated by 173 nucleotides Ac3H11_691 - D-aminoacylase (EC 3.5.1.81), at 47,161 to 48,648 _691 Ac3H11_692 - transcriptional regulator, RpiR family, at 48,650 to 49,612 _692 Ac3H11_693 - D-serine deaminase (EC 4.3.1.18), at 49,615 to 50,901 _693 Ac3H11_694 - Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1), at 51,075 to 52,100 _694 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.744 kb on + strandat 48.873 kb on + strand, within Ac3H11_692at 48.873 kb on + strand, within Ac3H11_692at 48.873 kb on + strand, within Ac3H11_692at 48.873 kb on + strand, within Ac3H11_692at 48.874 kb on - strand, within Ac3H11_692at 48.874 kb on - strand, within Ac3H11_692at 48.874 kb on - strand, within Ac3H11_692at 49.023 kb on + strand, within Ac3H11_692at 49.024 kb on - strand, within Ac3H11_692at 49.024 kb on - strand, within Ac3H11_692at 49.447 kb on + strand, within Ac3H11_692at 49.447 kb on + strand, within Ac3H11_692at 49.447 kb on + strand, within Ac3H11_692at 49.448 kb on - strand, within Ac3H11_692at 49.448 kb on - strand, within Ac3H11_692at 49.764 kb on - strand, within Ac3H11_693at 49.764 kb on - strand, within Ac3H11_693at 49.773 kb on - strand, within Ac3H11_693at 49.773 kb on - strand, within Ac3H11_693at 49.880 kb on + strand, within Ac3H11_693at 50.022 kb on - strand, within Ac3H11_693at 50.022 kb on - strand, within Ac3H11_693at 50.022 kb on - strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.045 kb on + strand, within Ac3H11_693at 50.046 kb on - strand, within Ac3H11_693at 50.273 kb on + strand, within Ac3H11_693at 50.274 kb on - strand, within Ac3H11_693at 50.610 kb on - strand, within Ac3H11_693at 50.723 kb on + strand, within Ac3H11_693at 50.723 kb on + strand, within Ac3H11_693at 50.723 kb on + strand, within Ac3H11_693at 50.723 kb on + strand, within Ac3H11_693at 50.724 kb on - strand, within Ac3H11_693at 50.876 kb on + strandat 50.876 kb on + strandat 51.077 kb on - strandat 51.313 kb on + strand, within Ac3H11_694at 51.314 kb on - strand, within Ac3H11_694at 51.334 kb on + strand, within Ac3H11_694at 51.335 kb on - strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.403 kb on + strand, within Ac3H11_694at 51.403 kb on + strand, within Ac3H11_694at 51.404 kb on - strand, within Ac3H11_694at 51.702 kb on - strand, within Ac3H11_694at 51.758 kb on - strand, within Ac3H11_694

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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48,744 + +1.1
48,873 + Ac3H11_692 0.23 +0.0
48,873 + Ac3H11_692 0.23 -0.0
48,873 + Ac3H11_692 0.23 -1.7
48,873 + Ac3H11_692 0.23 -0.0
48,874 - Ac3H11_692 0.23 -0.8
48,874 - Ac3H11_692 0.23 +0.1
48,874 - Ac3H11_692 0.23 -0.3
49,023 + Ac3H11_692 0.39 -0.6
49,024 - Ac3H11_692 0.39 +0.2
49,024 - Ac3H11_692 0.39 -1.4
49,447 + Ac3H11_692 0.83 +1.5
49,447 + Ac3H11_692 0.83 +0.0
49,447 + Ac3H11_692 0.83 -0.0
49,448 - Ac3H11_692 0.83 +1.6
49,448 - Ac3H11_692 0.83 -0.8
49,764 - Ac3H11_693 0.12 +0.4
49,764 - Ac3H11_693 0.12 +0.8
49,773 - Ac3H11_693 0.12 -0.3
49,773 - Ac3H11_693 0.12 +1.1
49,880 + Ac3H11_693 0.21 -0.6
50,022 - Ac3H11_693 0.32 +1.2
50,022 - Ac3H11_693 0.32 +0.1
50,022 - Ac3H11_693 0.32 -1.1
50,045 + Ac3H11_693 0.33 +0.4
50,045 + Ac3H11_693 0.33 -0.1
50,045 + Ac3H11_693 0.33 -2.3
50,045 + Ac3H11_693 0.33 -0.0
50,045 + Ac3H11_693 0.33 +0.3
50,045 + Ac3H11_693 0.33 -0.0
50,046 - Ac3H11_693 0.33 +2.5
50,273 + Ac3H11_693 0.51 -0.5
50,274 - Ac3H11_693 0.51 +0.4
50,610 - Ac3H11_693 0.77 -0.1
50,723 + Ac3H11_693 0.86 -0.1
50,723 + Ac3H11_693 0.86 -0.2
50,723 + Ac3H11_693 0.86 -0.3
50,723 + Ac3H11_693 0.86 -0.4
50,724 - Ac3H11_693 0.86 +1.2
50,876 + +1.9
50,876 + +0.5
51,077 - +0.9
51,313 + Ac3H11_694 0.23 -1.3
51,314 - Ac3H11_694 0.23 -1.4
51,334 + Ac3H11_694 0.25 +0.5
51,335 - Ac3H11_694 0.25 -0.1
51,376 + Ac3H11_694 0.29 +0.9
51,376 + Ac3H11_694 0.29 +0.9
51,376 + Ac3H11_694 0.29 -0.4
51,377 - Ac3H11_694 0.29 -0.2
51,377 - Ac3H11_694 0.29 +1.2
51,377 - Ac3H11_694 0.29 +1.4
51,403 + Ac3H11_694 0.32 -0.1
51,403 + Ac3H11_694 0.32 +0.6
51,404 - Ac3H11_694 0.32 +0.9
51,702 - Ac3H11_694 0.61 +0.4
51,758 - Ac3H11_694 0.67 -1.0

Or see this region's nucleotide sequence