Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_477 and Ac3H11_478 overlap by 4 nucleotides Ac3H11_478 and Ac3H11_479 overlap by 2 nucleotides Ac3H11_479 and Ac3H11_480 are separated by 84 nucleotides
Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171
_477
Ac3H11_478 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 174,168 to 174,953
_478
Ac3H11_479 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 174,952 to 175,809
_479
Ac3H11_480 - Ribonuclease HI (EC 3.1.26.4), at 175,894 to 176,343
_480
Position (kb) 174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.349 kb on - strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.471 kb on + strand, within Ac3H11_477 at 173.472 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.594 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.753 kb on + strand, within Ac3H11_477 at 173.754 kb on - strand, within Ac3H11_477 at 173.754 kb on - strand, within Ac3H11_477 at 173.819 kb on + strand, within Ac3H11_477 at 173.819 kb on + strand, within Ac3H11_477 at 173.852 kb on + strand, within Ac3H11_477 at 173.852 kb on + strand, within Ac3H11_477 at 173.853 kb on - strand, within Ac3H11_477 at 173.853 kb on - strand, within Ac3H11_477 at 173.870 kb on + strand, within Ac3H11_477 at 173.871 kb on - strand, within Ac3H11_477 at 173.871 kb on - strand, within Ac3H11_477 at 174.036 kb on + strand at 174.036 kb on + strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.373 kb on + strand, within Ac3H11_478 at 174.374 kb on - strand, within Ac3H11_478 at 174.436 kb on + strand, within Ac3H11_478 at 174.436 kb on + strand, within Ac3H11_478 at 174.437 kb on - strand, within Ac3H11_478 at 174.437 kb on - strand, within Ac3H11_478 at 174.567 kb on + strand, within Ac3H11_478 at 174.567 kb on + strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.602 kb on - strand, within Ac3H11_478 at 174.602 kb on - strand, within Ac3H11_478 at 174.737 kb on - strand, within Ac3H11_478 at 174.767 kb on + strand, within Ac3H11_478 at 174.768 kb on - strand, within Ac3H11_478 at 174.768 kb on - strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.967 kb on - strand at 174.967 kb on - strand at 174.967 kb on - strand at 174.968 kb on + strand at 174.969 kb on - strand at 175.007 kb on - strand at 175.063 kb on + strand, within Ac3H11_479 at 175.064 kb on - strand, within Ac3H11_479 at 175.123 kb on + strand, within Ac3H11_479 at 175.124 kb on - strand, within Ac3H11_479 at 175.432 kb on + strand, within Ac3H11_479 at 175.459 kb on + strand, within Ac3H11_479 at 175.459 kb on + strand, within Ac3H11_479 at 175.459 kb on + strand, within Ac3H11_479 at 175.459 kb on + strand, within Ac3H11_479 at 175.649 kb on - strand, within Ac3H11_479 at 175.649 kb on - strand, within Ac3H11_479 at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.807 kb on + strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.808 kb on - strand at 175.811 kb on + strand at 175.811 kb on + strand at 175.811 kb on + strand at 175.811 kb on + strand at 175.811 kb on + strand at 175.811 kb on + strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.812 kb on - strand at 175.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 173,168 - Ac3H11_477 0.34 -0.8 173,168 - Ac3H11_477 0.34 -0.6 173,168 - Ac3H11_477 0.34 -0.6 173,168 - Ac3H11_477 0.34 -0.4 173,168 - Ac3H11_477 0.34 -3.9 173,168 - Ac3H11_477 0.34 -0.4 173,250 - Ac3H11_477 0.39 -1.2 173,250 - Ac3H11_477 0.39 -0.3 173,250 - Ac3H11_477 0.39 +1.3 173,348 + Ac3H11_477 0.46 -0.2 173,348 + Ac3H11_477 0.46 -0.4 173,349 - Ac3H11_477 0.46 -1.6 173,413 + Ac3H11_477 0.50 +0.0 173,413 + Ac3H11_477 0.50 +0.9 173,435 + Ac3H11_477 0.51 +0.5 173,435 + Ac3H11_477 0.51 -1.2 173,435 + Ac3H11_477 0.51 +0.3 173,435 + Ac3H11_477 0.51 -2.0 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -0.7 173,435 + Ac3H11_477 0.51 -2.7 173,435 + Ac3H11_477 0.51 -1.3 173,435 + Ac3H11_477 0.51 -0.8 173,435 + Ac3H11_477 0.51 -2.8 173,435 + Ac3H11_477 0.51 +0.7 173,435 + Ac3H11_477 0.51 -1.4 173,435 + Ac3H11_477 0.51 -0.1 173,435 + Ac3H11_477 0.51 +0.5 173,435 + Ac3H11_477 0.51 +0.4 173,435 + Ac3H11_477 0.51 -1.7 173,435 + -1.1 173,435 + Ac3H11_477 0.51 -1.1 173,435 + Ac3H11_477 0.51 -0.1 173,435 + Ac3H11_477 0.51 -0.2 173,435 + Ac3H11_477 0.51 -1.7 173,435 + Ac3H11_477 0.51 -0.4 173,435 + Ac3H11_477 0.51 -3.0 173,435 + Ac3H11_477 0.51 -0.5 173,436 - Ac3H11_477 0.51 -0.6 173,436 - Ac3H11_477 0.51 -0.4 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -1.9 173,436 - Ac3H11_477 0.51 -2.4 173,436 - Ac3H11_477 0.51 -0.9 173,436 - Ac3H11_477 0.51 +0.5 173,436 - Ac3H11_477 0.51 -0.1 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -0.2 173,436 - Ac3H11_477 0.51 -3.4 173,436 - Ac3H11_477 0.51 +0.2 173,436 - Ac3H11_477 0.51 -1.2 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -2.6 173,436 - Ac3H11_477 0.51 -0.2 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -0.6 173,471 + Ac3H11_477 0.54 -0.4 173,472 - Ac3H11_477 0.54 -2.4 173,541 - Ac3H11_477 0.58 -0.3 173,541 - Ac3H11_477 0.58 +0.5 173,541 - Ac3H11_477 0.58 -0.9 173,541 - Ac3H11_477 0.58 -1.8 173,594 + Ac3H11_477 0.62 -0.6 173,623 + Ac3H11_477 0.64 -0.3 173,623 + Ac3H11_477 0.64 -0.1 173,623 + Ac3H11_477 0.64 -0.8 173,623 + Ac3H11_477 0.64 +0.7 173,669 + Ac3H11_477 0.67 +1.4 173,669 + Ac3H11_477 0.67 -1.9 173,669 + Ac3H11_477 0.67 -1.4 173,670 - Ac3H11_477 0.67 -1.1 173,670 - Ac3H11_477 0.67 -1.8 173,670 - Ac3H11_477 0.67 -0.1 173,753 + Ac3H11_477 0.72 +0.3 173,754 - Ac3H11_477 0.72 -0.3 173,754 - Ac3H11_477 0.72 -1.4 173,819 + Ac3H11_477 0.77 -1.1 173,819 + Ac3H11_477 0.77 -0.0 173,852 + Ac3H11_477 0.79 -2.7 173,852 + Ac3H11_477 0.79 -0.1 173,853 - Ac3H11_477 0.79 -1.7 173,853 - Ac3H11_477 0.79 +0.4 173,870 + Ac3H11_477 0.80 -0.2 173,871 - Ac3H11_477 0.80 -1.5 173,871 - Ac3H11_477 0.80 -2.1 174,036 + -0.7 174,036 + -0.7 174,037 - -0.1 174,037 - -1.1 174,037 - -0.7 174,037 - -1.9 174,373 + Ac3H11_478 0.26 -2.2 174,374 - Ac3H11_478 0.26 -0.7 174,436 + Ac3H11_478 0.34 -0.9 174,436 + Ac3H11_478 0.34 +0.5 174,437 - Ac3H11_478 0.34 -0.6 174,437 - Ac3H11_478 0.34 -0.3 174,567 + Ac3H11_478 0.51 -0.0 174,567 + Ac3H11_478 0.51 +0.5 174,568 - Ac3H11_478 0.51 +0.1 174,568 - Ac3H11_478 0.51 -0.6 174,568 - Ac3H11_478 0.51 +0.2 174,568 - Ac3H11_478 0.51 +0.1 174,598 + Ac3H11_478 0.55 +4.2 174,598 + Ac3H11_478 0.55 +1.1 174,598 + Ac3H11_478 0.55 -0.3 174,598 + Ac3H11_478 0.55 +1.1 174,598 + Ac3H11_478 0.55 +0.9 174,599 - Ac3H11_478 0.55 +0.3 174,599 - Ac3H11_478 0.55 +0.0 174,599 - Ac3H11_478 0.55 +0.3 174,601 + Ac3H11_478 0.55 +1.6 174,601 + Ac3H11_478 0.55 -0.2 174,601 + Ac3H11_478 0.55 -0.6 174,601 + Ac3H11_478 0.55 -1.8 174,602 - Ac3H11_478 0.55 +0.9 174,602 - Ac3H11_478 0.55 +0.6 174,737 - Ac3H11_478 0.72 +0.6 174,767 + Ac3H11_478 0.76 -0.4 174,768 - Ac3H11_478 0.76 -0.1 174,768 - Ac3H11_478 0.76 -0.6 174,807 + Ac3H11_478 0.81 +0.6 174,807 + Ac3H11_478 0.81 +0.1 174,807 + Ac3H11_478 0.81 -0.4 174,807 + Ac3H11_478 0.81 +0.3 174,808 - Ac3H11_478 0.81 +0.6 174,808 - Ac3H11_478 0.81 -1.0 174,808 - Ac3H11_478 0.81 -0.5 174,808 - Ac3H11_478 0.81 -0.4 174,808 - Ac3H11_478 0.81 -0.7 174,808 - Ac3H11_478 0.81 +0.2 174,916 + +0.7 174,916 + +0.1 174,916 + +0.4 174,916 + +1.2 174,916 + +1.3 174,916 + +0.8 174,916 + +0.4 174,916 + -0.7 174,916 + -0.7 174,917 - +1.7 174,917 - -0.2 174,917 - +0.0 174,917 - +0.2 174,917 - -0.3 174,917 - +0.3 174,917 - +0.2 174,917 - -0.3 174,917 - +1.4 174,917 - +0.0 174,966 + -1.1 174,966 + +0.3 174,966 + -0.6 174,966 + -0.9 174,967 - +0.5 174,967 - +0.8 174,967 - -0.4 174,968 + +3.5 174,969 - -0.7 175,007 - +0.4 175,063 + Ac3H11_479 0.13 +0.6 175,064 - Ac3H11_479 0.13 +0.4 175,123 + Ac3H11_479 0.20 +0.2 175,124 - Ac3H11_479 0.20 +2.1 175,432 + Ac3H11_479 0.56 +0.4 175,459 + Ac3H11_479 0.59 +0.3 175,459 + Ac3H11_479 0.59 +0.6 175,459 + Ac3H11_479 0.59 -0.3 175,459 + Ac3H11_479 0.59 -0.0 175,649 - Ac3H11_479 0.81 +0.3 175,649 - Ac3H11_479 0.81 -0.2 175,807 + -0.3 175,807 + -1.9 175,807 + +0.5 175,807 + +0.4 175,807 + -0.4 175,807 + -0.8 175,807 + +0.1 175,807 + -0.7 175,807 + -0.3 175,807 + -1.7 175,807 + -1.4 175,807 + +0.0 175,807 + -0.2 175,807 + -2.3 175,807 + -0.1 175,807 + +0.3 175,807 + +0.3 175,807 + +0.9 175,807 + +0.7 175,807 + +1.2 175,807 + -0.1 175,808 - -1.0 175,808 - +0.3 175,808 - -2.1 175,808 - +1.6 175,808 - +0.5 175,808 - -0.6 175,808 - +0.2 175,811 + +0.0 175,811 + +0.3 175,811 + +0.4 175,811 + -0.1 175,811 + -0.1 175,811 + +0.7 175,812 - +0.3 175,812 - -0.1 175,812 - +2.1 175,812 - +0.5 175,812 - +1.5 175,812 - -0.6 175,812 - +0.9 175,812 - -0.8 175,904 + -0.7
Or see this region's nucleotide sequence