Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_475 and Ac3H11_476 are separated by 222 nucleotides Ac3H11_476 and Ac3H11_477 are separated by 48 nucleotides Ac3H11_477 and Ac3H11_478 overlap by 4 nucleotides Ac3H11_478 and Ac3H11_479 overlap by 2 nucleotides
Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233
_475
Ac3H11_476 - hypothetical protein, at 172,456 to 172,608
_476
Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171
_477
Ac3H11_478 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 174,168 to 174,953
_478
Ac3H11_479 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 174,952 to 175,809
_479
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 171.861 kb on - strand, within Ac3H11_475 at 171.893 kb on - strand, within Ac3H11_475 at 171.893 kb on - strand, within Ac3H11_475 at 171.945 kb on + strand, within Ac3H11_475 at 172.021 kb on + strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.186 kb on + strand at 172.186 kb on + strand at 172.187 kb on - strand at 172.187 kb on - strand at 172.187 kb on - strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.327 kb on + strand at 172.327 kb on + strand at 172.327 kb on + strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.574 kb on + strand, within Ac3H11_476 at 172.574 kb on + strand, within Ac3H11_476 at 172.575 kb on - strand, within Ac3H11_476 at 172.575 kb on - strand, within Ac3H11_476 at 172.772 kb on + strand at 172.772 kb on + strand at 172.772 kb on + strand at 172.773 kb on - strand at 172.773 kb on - strand at 172.857 kb on - strand, within Ac3H11_477 at 173.144 kb on + strand, within Ac3H11_477 at 173.145 kb on - strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.349 kb on - strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.471 kb on + strand, within Ac3H11_477 at 173.472 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.594 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.623 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.669 kb on + strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.670 kb on - strand, within Ac3H11_477 at 173.753 kb on + strand, within Ac3H11_477 at 173.754 kb on - strand, within Ac3H11_477 at 173.754 kb on - strand, within Ac3H11_477 at 173.819 kb on + strand, within Ac3H11_477 at 173.819 kb on + strand, within Ac3H11_477 at 173.852 kb on + strand, within Ac3H11_477 at 173.852 kb on + strand, within Ac3H11_477 at 173.853 kb on - strand, within Ac3H11_477 at 173.853 kb on - strand, within Ac3H11_477 at 173.870 kb on + strand, within Ac3H11_477 at 173.871 kb on - strand, within Ac3H11_477 at 173.871 kb on - strand, within Ac3H11_477 at 174.036 kb on + strand at 174.036 kb on + strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.037 kb on - strand at 174.373 kb on + strand, within Ac3H11_478 at 174.374 kb on - strand, within Ac3H11_478 at 174.436 kb on + strand, within Ac3H11_478 at 174.436 kb on + strand, within Ac3H11_478 at 174.437 kb on - strand, within Ac3H11_478 at 174.437 kb on - strand, within Ac3H11_478 at 174.567 kb on + strand, within Ac3H11_478 at 174.567 kb on + strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.568 kb on - strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.598 kb on + strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.599 kb on - strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.601 kb on + strand, within Ac3H11_478 at 174.602 kb on - strand, within Ac3H11_478 at 174.602 kb on - strand, within Ac3H11_478 at 174.737 kb on - strand, within Ac3H11_478 at 174.767 kb on + strand, within Ac3H11_478 at 174.768 kb on - strand, within Ac3H11_478 at 174.768 kb on - strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.807 kb on + strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.808 kb on - strand, within Ac3H11_478 at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.916 kb on + strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.917 kb on - strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.966 kb on + strand at 174.967 kb on - strand at 174.967 kb on - strand at 174.967 kb on - strand at 174.968 kb on + strand at 174.969 kb on - strand at 175.007 kb on - strand at 175.063 kb on + strand, within Ac3H11_479 at 175.064 kb on - strand, within Ac3H11_479 at 175.123 kb on + strand, within Ac3H11_479 at 175.124 kb on - strand, within Ac3H11_479
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 171,861 - Ac3H11_475 0.65 +0.5 171,893 - Ac3H11_475 0.68 -0.8 171,893 - Ac3H11_475 0.68 -0.9 171,945 + Ac3H11_475 0.73 +0.1 172,021 + Ac3H11_475 0.80 -0.7 172,022 - Ac3H11_475 0.80 +0.1 172,022 - Ac3H11_475 0.80 -0.9 172,022 - Ac3H11_475 0.80 +0.0 172,045 + Ac3H11_475 0.82 -0.7 172,045 + Ac3H11_475 0.82 +0.7 172,045 + Ac3H11_475 0.82 -0.3 172,046 - Ac3H11_475 0.83 -0.0 172,046 - Ac3H11_475 0.83 +0.1 172,046 - Ac3H11_475 0.83 +0.6 172,186 + +1.1 172,186 + +1.0 172,187 - +0.7 172,187 - +1.1 172,187 - +1.9 172,222 + -0.7 172,222 + -0.5 172,222 + +0.1 172,222 + +0.5 172,222 + +0.2 172,223 - +0.5 172,223 - -2.1 172,327 + +0.7 172,327 + -0.0 172,327 + +1.9 172,328 - -1.1 172,328 - -0.0 172,328 - -0.7 172,328 - +0.9 172,328 - -0.1 172,552 + Ac3H11_476 0.63 +0.7 172,552 + Ac3H11_476 0.63 -1.1 172,552 + Ac3H11_476 0.63 -1.5 172,552 + Ac3H11_476 0.63 -0.6 172,552 + Ac3H11_476 0.63 +0.5 172,553 - Ac3H11_476 0.63 -0.0 172,553 - Ac3H11_476 0.63 +0.7 172,553 - Ac3H11_476 0.63 +0.9 172,553 - Ac3H11_476 0.63 -0.2 172,574 + Ac3H11_476 0.77 -0.8 172,574 + Ac3H11_476 0.77 -0.3 172,575 - Ac3H11_476 0.78 -2.2 172,575 - Ac3H11_476 0.78 -1.4 172,772 + -0.4 172,772 + +1.9 172,772 + -1.4 172,773 - -1.0 172,773 - -0.2 172,857 - Ac3H11_477 0.13 -2.0 173,144 + Ac3H11_477 0.32 -1.2 173,145 - Ac3H11_477 0.32 -1.1 173,167 + Ac3H11_477 0.34 -1.3 173,167 + Ac3H11_477 0.34 -0.2 173,167 + Ac3H11_477 0.34 -0.6 173,167 + Ac3H11_477 0.34 -0.6 173,167 + Ac3H11_477 0.34 +0.4 173,167 + Ac3H11_477 0.34 +0.1 173,167 + Ac3H11_477 0.34 -1.5 173,167 + Ac3H11_477 0.34 -0.9 173,168 - Ac3H11_477 0.34 -0.8 173,168 - Ac3H11_477 0.34 -0.6 173,168 - Ac3H11_477 0.34 -0.6 173,168 - Ac3H11_477 0.34 -0.4 173,168 - Ac3H11_477 0.34 -3.9 173,168 - Ac3H11_477 0.34 -0.4 173,250 - Ac3H11_477 0.39 -1.2 173,250 - Ac3H11_477 0.39 -0.3 173,250 - Ac3H11_477 0.39 +1.3 173,348 + Ac3H11_477 0.46 -0.2 173,348 + Ac3H11_477 0.46 -0.4 173,349 - Ac3H11_477 0.46 -1.6 173,413 + Ac3H11_477 0.50 +0.0 173,413 + Ac3H11_477 0.50 +0.9 173,435 + Ac3H11_477 0.51 +0.5 173,435 + Ac3H11_477 0.51 -1.2 173,435 + Ac3H11_477 0.51 +0.3 173,435 + Ac3H11_477 0.51 -2.0 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -0.7 173,435 + Ac3H11_477 0.51 -2.7 173,435 + Ac3H11_477 0.51 -1.3 173,435 + Ac3H11_477 0.51 -0.8 173,435 + Ac3H11_477 0.51 -2.8 173,435 + Ac3H11_477 0.51 +0.7 173,435 + Ac3H11_477 0.51 -1.4 173,435 + Ac3H11_477 0.51 -0.1 173,435 + Ac3H11_477 0.51 +0.5 173,435 + Ac3H11_477 0.51 +0.4 173,435 + Ac3H11_477 0.51 -1.7 173,435 + -1.1 173,435 + Ac3H11_477 0.51 -1.1 173,435 + Ac3H11_477 0.51 -0.1 173,435 + Ac3H11_477 0.51 -0.2 173,435 + Ac3H11_477 0.51 -1.7 173,435 + Ac3H11_477 0.51 -0.4 173,435 + Ac3H11_477 0.51 -3.0 173,435 + Ac3H11_477 0.51 -0.5 173,436 - Ac3H11_477 0.51 -0.6 173,436 - Ac3H11_477 0.51 -0.4 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -1.9 173,436 - Ac3H11_477 0.51 -2.4 173,436 - Ac3H11_477 0.51 -0.9 173,436 - Ac3H11_477 0.51 +0.5 173,436 - Ac3H11_477 0.51 -0.1 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -0.2 173,436 - Ac3H11_477 0.51 -3.4 173,436 - Ac3H11_477 0.51 +0.2 173,436 - Ac3H11_477 0.51 -1.2 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -2.6 173,436 - Ac3H11_477 0.51 -0.2 173,436 - Ac3H11_477 0.51 -0.8 173,436 - Ac3H11_477 0.51 -0.6 173,471 + Ac3H11_477 0.54 -0.4 173,472 - Ac3H11_477 0.54 -2.4 173,541 - Ac3H11_477 0.58 -0.3 173,541 - Ac3H11_477 0.58 +0.5 173,541 - Ac3H11_477 0.58 -0.9 173,541 - Ac3H11_477 0.58 -1.8 173,594 + Ac3H11_477 0.62 -0.6 173,623 + Ac3H11_477 0.64 -0.3 173,623 + Ac3H11_477 0.64 -0.1 173,623 + Ac3H11_477 0.64 -0.8 173,623 + Ac3H11_477 0.64 +0.7 173,669 + Ac3H11_477 0.67 +1.4 173,669 + Ac3H11_477 0.67 -1.9 173,669 + Ac3H11_477 0.67 -1.4 173,670 - Ac3H11_477 0.67 -1.1 173,670 - Ac3H11_477 0.67 -1.8 173,670 - Ac3H11_477 0.67 -0.1 173,753 + Ac3H11_477 0.72 +0.3 173,754 - Ac3H11_477 0.72 -0.3 173,754 - Ac3H11_477 0.72 -1.4 173,819 + Ac3H11_477 0.77 -1.1 173,819 + Ac3H11_477 0.77 -0.0 173,852 + Ac3H11_477 0.79 -2.7 173,852 + Ac3H11_477 0.79 -0.1 173,853 - Ac3H11_477 0.79 -1.7 173,853 - Ac3H11_477 0.79 +0.4 173,870 + Ac3H11_477 0.80 -0.2 173,871 - Ac3H11_477 0.80 -1.5 173,871 - Ac3H11_477 0.80 -2.1 174,036 + -0.7 174,036 + -0.7 174,037 - -0.1 174,037 - -1.1 174,037 - -0.7 174,037 - -1.9 174,373 + Ac3H11_478 0.26 -2.2 174,374 - Ac3H11_478 0.26 -0.7 174,436 + Ac3H11_478 0.34 -0.9 174,436 + Ac3H11_478 0.34 +0.5 174,437 - Ac3H11_478 0.34 -0.6 174,437 - Ac3H11_478 0.34 -0.3 174,567 + Ac3H11_478 0.51 -0.0 174,567 + Ac3H11_478 0.51 +0.5 174,568 - Ac3H11_478 0.51 +0.1 174,568 - Ac3H11_478 0.51 -0.6 174,568 - Ac3H11_478 0.51 +0.2 174,568 - Ac3H11_478 0.51 +0.1 174,598 + Ac3H11_478 0.55 +4.2 174,598 + Ac3H11_478 0.55 +1.1 174,598 + Ac3H11_478 0.55 -0.3 174,598 + Ac3H11_478 0.55 +1.1 174,598 + Ac3H11_478 0.55 +0.9 174,599 - Ac3H11_478 0.55 +0.3 174,599 - Ac3H11_478 0.55 +0.0 174,599 - Ac3H11_478 0.55 +0.3 174,601 + Ac3H11_478 0.55 +1.6 174,601 + Ac3H11_478 0.55 -0.2 174,601 + Ac3H11_478 0.55 -0.6 174,601 + Ac3H11_478 0.55 -1.8 174,602 - Ac3H11_478 0.55 +0.9 174,602 - Ac3H11_478 0.55 +0.6 174,737 - Ac3H11_478 0.72 +0.6 174,767 + Ac3H11_478 0.76 -0.4 174,768 - Ac3H11_478 0.76 -0.1 174,768 - Ac3H11_478 0.76 -0.6 174,807 + Ac3H11_478 0.81 +0.6 174,807 + Ac3H11_478 0.81 +0.1 174,807 + Ac3H11_478 0.81 -0.4 174,807 + Ac3H11_478 0.81 +0.3 174,808 - Ac3H11_478 0.81 +0.6 174,808 - Ac3H11_478 0.81 -1.0 174,808 - Ac3H11_478 0.81 -0.5 174,808 - Ac3H11_478 0.81 -0.4 174,808 - Ac3H11_478 0.81 -0.7 174,808 - Ac3H11_478 0.81 +0.2 174,916 + +0.7 174,916 + +0.1 174,916 + +0.4 174,916 + +1.2 174,916 + +1.3 174,916 + +0.8 174,916 + +0.4 174,916 + -0.7 174,916 + -0.7 174,917 - +1.7 174,917 - -0.2 174,917 - +0.0 174,917 - +0.2 174,917 - -0.3 174,917 - +0.3 174,917 - +0.2 174,917 - -0.3 174,917 - +1.4 174,917 - +0.0 174,966 + -1.1 174,966 + +0.3 174,966 + -0.6 174,966 + -0.9 174,967 - +0.5 174,967 - +0.8 174,967 - -0.4 174,968 + +3.5 174,969 - -0.7 175,007 - +0.4 175,063 + Ac3H11_479 0.13 +0.6 175,064 - Ac3H11_479 0.13 +0.4 175,123 + Ac3H11_479 0.20 +0.2 175,124 - Ac3H11_479 0.20 +2.1
Or see this region's nucleotide sequence