Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_475

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_473 and Ac3H11_474 are separated by 106 nucleotidesAc3H11_474 and Ac3H11_475 are separated by 150 nucleotidesAc3H11_475 and Ac3H11_476 are separated by 222 nucleotidesAc3H11_476 and Ac3H11_477 are separated by 48 nucleotides Ac3H11_473 - Recombination protein RecR, at 169,977 to 170,486 _473 Ac3H11_474 - probable membrane protein NMA1176, at 170,593 to 171,006 _474 Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233 _475 Ac3H11_476 - hypothetical protein, at 172,456 to 172,608 _476 Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171 _477 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.439 kb on + strandat 170.439 kb on + strandat 170.439 kb on + strandat 170.440 kb on - strandat 170.529 kb on + strandat 170.905 kb on + strand, within Ac3H11_474at 170.905 kb on + strand, within Ac3H11_474at 170.906 kb on - strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 171.084 kb on + strandat 171.084 kb on + strandat 171.084 kb on + strandat 171.085 kb on - strandat 171.085 kb on - strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.328 kb on + strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.365 kb on - strand, within Ac3H11_475at 171.374 kb on + strand, within Ac3H11_475at 171.375 kb on - strand, within Ac3H11_475at 171.580 kb on + strand, within Ac3H11_475at 171.580 kb on + strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.861 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.945 kb on + strand, within Ac3H11_475at 172.021 kb on + strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.186 kb on + strandat 172.186 kb on + strandat 172.187 kb on - strandat 172.187 kb on - strandat 172.187 kb on - strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.223 kb on - strandat 172.223 kb on - strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.574 kb on + strand, within Ac3H11_476at 172.574 kb on + strand, within Ac3H11_476at 172.575 kb on - strand, within Ac3H11_476at 172.575 kb on - strand, within Ac3H11_476at 172.772 kb on + strandat 172.772 kb on + strandat 172.772 kb on + strandat 172.773 kb on - strandat 172.773 kb on - strandat 172.857 kb on - strand, within Ac3H11_477at 173.144 kb on + strand, within Ac3H11_477at 173.145 kb on - strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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170,205 + Ac3H11_473 0.45 +2.1
170,205 + Ac3H11_473 0.45 -1.3
170,205 + Ac3H11_473 0.45 -0.5
170,205 + Ac3H11_473 0.45 -0.2
170,205 + Ac3H11_473 0.45 +0.1
170,205 + Ac3H11_473 0.45 +0.2
170,205 + Ac3H11_473 0.45 -2.7
170,205 + Ac3H11_473 0.45 +1.0
170,205 + Ac3H11_473 0.45 -0.2
170,205 + Ac3H11_473 0.45 -0.5
170,206 - Ac3H11_473 0.45 +0.1
170,206 - Ac3H11_473 0.45 +0.3
170,206 - Ac3H11_473 0.45 -1.2
170,439 + -1.4
170,439 + +0.4
170,439 + -0.4
170,440 - -1.0
170,529 + +0.7
170,905 + Ac3H11_474 0.75 +0.4
170,905 + Ac3H11_474 0.75 -1.6
170,906 - Ac3H11_474 0.76 +0.9
170,917 + Ac3H11_474 0.78 +0.4
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 -1.4
170,917 + Ac3H11_474 0.78 -1.8
170,917 + Ac3H11_474 0.78 -0.8
170,917 + Ac3H11_474 0.78 -1.5
170,917 + Ac3H11_474 0.78 -0.3
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 -0.9
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 +0.2
170,917 + Ac3H11_474 0.78 +0.1
170,917 + Ac3H11_474 0.78 -0.0
170,917 + Ac3H11_474 0.78 +0.0
170,917 + Ac3H11_474 0.78 +0.8
170,917 + Ac3H11_474 0.78 +0.6
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 -1.0
170,917 + Ac3H11_474 0.78 +1.4
170,917 + Ac3H11_474 0.78 -1.1
170,917 + Ac3H11_474 0.78 +1.2
170,917 + Ac3H11_474 0.78 -0.7
170,917 + Ac3H11_474 0.78 -0.7
170,917 + Ac3H11_474 0.78 -0.8
170,917 + Ac3H11_474 0.78 -0.5
170,917 + Ac3H11_474 0.78 +0.1
170,917 + Ac3H11_474 0.78 +0.3
170,918 - Ac3H11_474 0.79 -0.7
170,918 - Ac3H11_474 0.79 +3.2
170,918 - Ac3H11_474 0.79 +0.3
170,918 - Ac3H11_474 0.79 -1.2
170,918 - Ac3H11_474 0.79 -0.6
170,918 - Ac3H11_474 0.79 -2.1
170,918 - Ac3H11_474 0.79 +0.2
170,918 - Ac3H11_474 0.79 -1.8
170,918 - Ac3H11_474 0.79 +0.7
170,918 - Ac3H11_474 0.79 -0.7
170,918 - Ac3H11_474 0.79 -0.5
170,918 - Ac3H11_474 0.79 -1.6
170,918 - Ac3H11_474 0.79 -0.1
170,918 - Ac3H11_474 0.79 +0.3
170,918 - Ac3H11_474 0.79 -0.6
170,918 - Ac3H11_474 0.79 -0.2
170,918 - Ac3H11_474 0.79 -0.7
170,918 - Ac3H11_474 0.79 +1.5
170,918 - Ac3H11_474 0.79 +0.9
170,918 - Ac3H11_474 0.79 -1.8
171,084 + -1.8
171,084 + +0.6
171,084 + -0.6
171,085 - -0.3
171,085 - -0.9
171,088 + -1.6
171,088 + -0.8
171,088 + -1.9
171,088 + -0.5
171,089 - -0.3
171,089 - -0.3
171,089 - +0.8
171,089 - -1.6
171,089 - +0.5
171,328 + Ac3H11_475 0.16 -0.1
171,329 - Ac3H11_475 0.16 -0.1
171,329 - Ac3H11_475 0.16 +0.2
171,329 - Ac3H11_475 0.16 -0.0
171,329 - Ac3H11_475 0.16 -0.6
171,329 - Ac3H11_475 0.16 +0.7
171,329 - Ac3H11_475 0.16 +0.6
171,329 - Ac3H11_475 0.16 +0.9
171,365 - Ac3H11_475 0.19 -0.2
171,374 + Ac3H11_475 0.20 -1.6
171,375 - Ac3H11_475 0.20 +0.7
171,580 + Ac3H11_475 0.39 -0.3
171,580 + Ac3H11_475 0.39 +0.3
171,581 - Ac3H11_475 0.39 +0.5
171,581 - Ac3H11_475 0.39 +1.0
171,861 - Ac3H11_475 0.65 +0.5
171,893 - Ac3H11_475 0.68 -0.8
171,893 - Ac3H11_475 0.68 -0.9
171,945 + Ac3H11_475 0.73 +0.1
172,021 + Ac3H11_475 0.80 -0.7
172,022 - Ac3H11_475 0.80 +0.1
172,022 - Ac3H11_475 0.80 -0.9
172,022 - Ac3H11_475 0.80 +0.0
172,045 + Ac3H11_475 0.82 -0.7
172,045 + Ac3H11_475 0.82 +0.7
172,045 + Ac3H11_475 0.82 -0.3
172,046 - Ac3H11_475 0.83 -0.0
172,046 - Ac3H11_475 0.83 +0.1
172,046 - Ac3H11_475 0.83 +0.6
172,186 + +1.1
172,186 + +1.0
172,187 - +0.7
172,187 - +1.1
172,187 - +1.9
172,222 + -0.7
172,222 + -0.5
172,222 + +0.1
172,222 + +0.5
172,222 + +0.2
172,223 - +0.5
172,223 - -2.1
172,327 + +0.7
172,327 + -0.0
172,327 + +1.9
172,328 - -1.1
172,328 - -0.0
172,328 - -0.7
172,328 - +0.9
172,328 - -0.1
172,552 + Ac3H11_476 0.63 +0.7
172,552 + Ac3H11_476 0.63 -1.1
172,552 + Ac3H11_476 0.63 -1.5
172,552 + Ac3H11_476 0.63 -0.6
172,552 + Ac3H11_476 0.63 +0.5
172,553 - Ac3H11_476 0.63 -0.0
172,553 - Ac3H11_476 0.63 +0.7
172,553 - Ac3H11_476 0.63 +0.9
172,553 - Ac3H11_476 0.63 -0.2
172,574 + Ac3H11_476 0.77 -0.8
172,574 + Ac3H11_476 0.77 -0.3
172,575 - Ac3H11_476 0.78 -2.2
172,575 - Ac3H11_476 0.78 -1.4
172,772 + -0.4
172,772 + +1.9
172,772 + -1.4
172,773 - -1.0
172,773 - -0.2
172,857 - Ac3H11_477 0.13 -2.0
173,144 + Ac3H11_477 0.32 -1.2
173,145 - Ac3H11_477 0.32 -1.1
173,167 + Ac3H11_477 0.34 -1.3
173,167 + Ac3H11_477 0.34 -0.2
173,167 + Ac3H11_477 0.34 -0.6
173,167 + Ac3H11_477 0.34 -0.6
173,167 + Ac3H11_477 0.34 +0.4
173,167 + Ac3H11_477 0.34 +0.1
173,167 + Ac3H11_477 0.34 -1.5
173,167 + Ac3H11_477 0.34 -0.9
173,168 - Ac3H11_477 0.34 -0.8
173,168 - Ac3H11_477 0.34 -0.6
173,168 - Ac3H11_477 0.34 -0.6
173,168 - Ac3H11_477 0.34 -0.4
173,168 - Ac3H11_477 0.34 -3.9
173,168 - Ac3H11_477 0.34 -0.4

Or see this region's nucleotide sequence