Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4597 and Ac3H11_4598 are separated by 176 nucleotides Ac3H11_4598 and Ac3H11_4599 are separated by 394 nucleotides Ac3H11_4599 and Ac3H11_4600 overlap by 4 nucleotides
Ac3H11_4597 - Copper tolerance protein, at 197,696 to 198,949
_4597
Ac3H11_4598 - hypothetical protein, at 199,126 to 199,335
_4598
Ac3H11_4599 - DNA-binding heavy metal response regulator, at 199,730 to 200,275
_4599
Ac3H11_4600 - Heavy metal sensor histidine kinase, at 200,272 to 201,678
_4600
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.793 kb on + strand, within Ac3H11_4597 at 198.793 kb on + strand, within Ac3H11_4597 at 198.793 kb on + strand, within Ac3H11_4597 at 198.793 kb on + strand, within Ac3H11_4597 at 198.793 kb on + strand, within Ac3H11_4597 at 198.794 kb on - strand, within Ac3H11_4597 at 198.875 kb on - strand at 198.875 kb on - strand at 198.982 kb on + strand at 198.982 kb on + strand at 198.982 kb on + strand at 198.982 kb on + strand at 198.982 kb on + strand at 198.982 kb on + strand at 198.983 kb on - strand at 198.983 kb on - strand at 198.983 kb on - strand at 199.094 kb on + strand at 199.094 kb on + strand at 199.094 kb on + strand at 199.094 kb on + strand at 199.095 kb on - strand at 199.095 kb on - strand at 199.095 kb on - strand at 199.095 kb on - strand at 199.095 kb on - strand at 199.120 kb on + strand at 199.121 kb on - strand at 199.215 kb on - strand, within Ac3H11_4598 at 199.215 kb on - strand, within Ac3H11_4598 at 199.215 kb on - strand, within Ac3H11_4598 at 199.287 kb on - strand, within Ac3H11_4598 at 199.296 kb on - strand, within Ac3H11_4598 at 199.296 kb on - strand, within Ac3H11_4598 at 199.296 kb on - strand, within Ac3H11_4598 at 199.328 kb on + strand at 199.328 kb on + strand at 199.329 kb on - strand at 199.416 kb on + strand at 199.416 kb on + strand at 199.416 kb on + strand at 199.443 kb on + strand at 199.443 kb on + strand at 199.497 kb on + strand at 199.501 kb on + strand at 199.501 kb on + strand at 199.501 kb on + strand at 199.501 kb on + strand at 199.513 kb on + strand at 199.513 kb on + strand at 199.513 kb on + strand at 199.513 kb on + strand at 199.514 kb on - strand at 199.514 kb on - strand at 199.514 kb on - strand at 199.514 kb on - strand at 199.514 kb on - strand at 199.514 kb on - strand at 199.596 kb on + strand at 199.596 kb on + strand at 199.596 kb on + strand at 199.596 kb on + strand at 199.597 kb on - strand at 199.631 kb on + strand at 199.632 kb on - strand at 199.632 kb on - strand at 199.721 kb on + strand at 199.721 kb on + strand at 199.722 kb on - strand at 199.722 kb on - strand at 199.722 kb on - strand at 199.722 kb on - strand at 199.722 kb on - strand at 199.783 kb on + strand at 199.783 kb on + strand at 199.783 kb on + strand at 199.783 kb on + strand at 199.783 kb on + strand at 199.784 kb on - strand at 199.784 kb on - strand at 199.815 kb on + strand, within Ac3H11_4599 at 199.815 kb on + strand, within Ac3H11_4599 at 199.815 kb on + strand, within Ac3H11_4599 at 199.815 kb on + strand, within Ac3H11_4599 at 199.816 kb on - strand, within Ac3H11_4599 at 199.816 kb on - strand, within Ac3H11_4599 at 199.860 kb on + strand, within Ac3H11_4599 at 199.860 kb on + strand, within Ac3H11_4599 at 199.860 kb on + strand, within Ac3H11_4599 at 199.860 kb on + strand, within Ac3H11_4599 at 199.861 kb on - strand, within Ac3H11_4599 at 199.861 kb on - strand, within Ac3H11_4599 at 199.880 kb on + strand, within Ac3H11_4599 at 199.880 kb on + strand, within Ac3H11_4599 at 199.881 kb on - strand, within Ac3H11_4599 at 199.932 kb on + strand, within Ac3H11_4599 at 199.932 kb on + strand, within Ac3H11_4599 at 199.932 kb on + strand, within Ac3H11_4599 at 199.933 kb on - strand, within Ac3H11_4599 at 199.933 kb on - strand, within Ac3H11_4599 at 199.933 kb on - strand, within Ac3H11_4599 at 199.967 kb on - strand, within Ac3H11_4599 at 199.967 kb on - strand, within Ac3H11_4599 at 200.131 kb on + strand, within Ac3H11_4599 at 200.131 kb on + strand, within Ac3H11_4599 at 200.132 kb on - strand, within Ac3H11_4599 at 200.204 kb on + strand, within Ac3H11_4599 at 200.205 kb on - strand, within Ac3H11_4599 at 200.205 kb on - strand, within Ac3H11_4599 at 200.205 kb on - strand, within Ac3H11_4599 at 200.243 kb on + strand at 200.243 kb on + strand at 200.243 kb on + strand at 200.244 kb on - strand at 200.244 kb on - strand at 200.316 kb on + strand at 200.316 kb on + strand at 200.316 kb on + strand at 200.316 kb on + strand at 200.317 kb on - strand at 200.317 kb on - strand at 200.370 kb on + strand at 200.442 kb on - strand, within Ac3H11_4600 at 200.442 kb on - strand, within Ac3H11_4600 at 200.705 kb on + strand, within Ac3H11_4600 at 200.705 kb on + strand, within Ac3H11_4600 at 200.711 kb on + strand, within Ac3H11_4600 at 200.711 kb on + strand, within Ac3H11_4600 at 200.711 kb on + strand, within Ac3H11_4600 at 200.711 kb on + strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.712 kb on - strand, within Ac3H11_4600 at 200.740 kb on + strand, within Ac3H11_4600 at 200.740 kb on + strand, within Ac3H11_4600 at 200.740 kb on + strand, within Ac3H11_4600 at 200.740 kb on + strand, within Ac3H11_4600 at 200.740 kb on + strand, within Ac3H11_4600 at 200.741 kb on - strand, within Ac3H11_4600 at 200.767 kb on + strand, within Ac3H11_4600 at 200.767 kb on + strand, within Ac3H11_4600 at 200.768 kb on - strand, within Ac3H11_4600 at 200.787 kb on - strand, within Ac3H11_4600 at 201.063 kb on + strand, within Ac3H11_4600 at 201.063 kb on + strand, within Ac3H11_4600 at 201.088 kb on + strand, within Ac3H11_4600 at 201.088 kb on + strand, within Ac3H11_4600 at 201.088 kb on + strand, within Ac3H11_4600 at 201.089 kb on - strand, within Ac3H11_4600 at 201.089 kb on - strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.098 kb on + strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.099 kb on - strand, within Ac3H11_4600 at 201.121 kb on + strand, within Ac3H11_4600 at 201.121 kb on + strand, within Ac3H11_4600 at 201.121 kb on + strand, within Ac3H11_4600 at 201.121 kb on + strand, within Ac3H11_4600 at 201.121 kb on + strand, within Ac3H11_4600 at 201.183 kb on + strand, within Ac3H11_4600 at 201.183 kb on + strand, within Ac3H11_4600 at 201.183 kb on + strand, within Ac3H11_4600 at 201.183 kb on + strand, within Ac3H11_4600 at 201.183 kb on + strand, within Ac3H11_4600 at 201.184 kb on - strand, within Ac3H11_4600 at 201.184 kb on - strand, within Ac3H11_4600 at 201.184 kb on - strand, within Ac3H11_4600 at 201.184 kb on - strand, within Ac3H11_4600
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 198,793 + Ac3H11_4597 0.87 -2.8 198,793 + Ac3H11_4597 0.87 +0.2 198,793 + Ac3H11_4597 0.87 -0.2 198,793 + Ac3H11_4597 0.87 +0.3 198,793 + Ac3H11_4597 0.87 -0.3 198,794 - Ac3H11_4597 0.88 -0.2 198,875 - +0.9 198,875 - +0.3 198,982 + +1.3 198,982 + -0.6 198,982 + -1.8 198,982 + -0.0 198,982 + -1.0 198,982 + +0.4 198,983 - +0.2 198,983 - +0.3 198,983 - -0.4 199,094 + +0.7 199,094 + -0.5 199,094 + +0.9 199,094 + +0.1 199,095 - -1.5 199,095 - +0.8 199,095 - -0.6 199,095 - +0.3 199,095 - +0.1 199,120 + +0.8 199,121 - +0.5 199,215 - Ac3H11_4598 0.42 -0.8 199,215 - Ac3H11_4598 0.42 +0.2 199,215 - Ac3H11_4598 0.42 -0.2 199,287 - Ac3H11_4598 0.77 +0.4 199,296 - Ac3H11_4598 0.81 -0.6 199,296 - Ac3H11_4598 0.81 +0.3 199,296 - Ac3H11_4598 0.81 -1.1 199,328 + +0.8 199,328 + +0.3 199,329 - +1.1 199,416 + -1.4 199,416 + +0.7 199,416 + +1.4 199,443 + -0.5 199,443 + +0.4 199,497 + +0.1 199,501 + +0.8 199,501 + -2.6 199,501 + -1.5 199,501 + -0.7 199,513 + -2.6 199,513 + -0.5 199,513 + -0.5 199,513 + -0.3 199,514 - +0.6 199,514 - +2.0 199,514 - -1.5 199,514 - +0.8 199,514 - +0.7 199,514 - +1.0 199,596 + -2.4 199,596 + -0.6 199,596 + -0.3 199,596 + +0.2 199,597 - +1.1 199,631 + -0.1 199,632 - +0.8 199,632 - +1.9 199,721 + +0.5 199,721 + -1.4 199,722 - -0.8 199,722 - -0.3 199,722 - -0.0 199,722 - +0.0 199,722 - -0.8 199,783 + -0.9 199,783 + -0.9 199,783 + +0.2 199,783 + +2.5 199,783 + -1.4 199,784 - +0.3 199,784 - -0.7 199,815 + Ac3H11_4599 0.16 +0.2 199,815 + Ac3H11_4599 0.16 -1.3 199,815 + Ac3H11_4599 0.16 +0.8 199,815 + Ac3H11_4599 0.16 -0.9 199,816 - Ac3H11_4599 0.16 +0.3 199,816 - Ac3H11_4599 0.16 -0.3 199,860 + Ac3H11_4599 0.24 +0.0 199,860 + Ac3H11_4599 0.24 -0.7 199,860 + Ac3H11_4599 0.24 +0.6 199,860 + Ac3H11_4599 0.24 +0.7 199,861 - Ac3H11_4599 0.24 +0.1 199,861 - Ac3H11_4599 0.24 +0.5 199,880 + Ac3H11_4599 0.27 +0.7 199,880 + Ac3H11_4599 0.27 +0.3 199,881 - Ac3H11_4599 0.28 +0.6 199,932 + Ac3H11_4599 0.37 +0.9 199,932 + Ac3H11_4599 0.37 +0.7 199,932 + Ac3H11_4599 0.37 +0.6 199,933 - Ac3H11_4599 0.37 +0.3 199,933 - Ac3H11_4599 0.37 -1.0 199,933 - Ac3H11_4599 0.37 -0.4 199,967 - Ac3H11_4599 0.43 -2.0 199,967 - Ac3H11_4599 0.43 +0.7 200,131 + Ac3H11_4599 0.73 -0.7 200,131 + Ac3H11_4599 0.73 -0.1 200,132 - Ac3H11_4599 0.74 -0.2 200,204 + Ac3H11_4599 0.87 -0.1 200,205 - Ac3H11_4599 0.87 +0.0 200,205 - Ac3H11_4599 0.87 +0.1 200,205 - Ac3H11_4599 0.87 +1.0 200,243 + -2.4 200,243 + -1.3 200,243 + -0.8 200,244 - -1.9 200,244 - +1.5 200,316 + -0.9 200,316 + -1.1 200,316 + -0.6 200,316 + -0.0 200,317 - -0.0 200,317 - -0.2 200,370 + -1.0 200,442 - Ac3H11_4600 0.12 +1.3 200,442 - Ac3H11_4600 0.12 -0.6 200,705 + Ac3H11_4600 0.31 -1.8 200,705 + Ac3H11_4600 0.31 +0.6 200,711 + Ac3H11_4600 0.31 -0.3 200,711 + Ac3H11_4600 0.31 -0.2 200,711 + Ac3H11_4600 0.31 -1.5 200,711 + Ac3H11_4600 0.31 +0.5 200,712 - Ac3H11_4600 0.31 -0.4 200,712 - Ac3H11_4600 0.31 +0.3 200,712 - Ac3H11_4600 0.31 +1.1 200,712 - Ac3H11_4600 0.31 +0.2 200,712 - Ac3H11_4600 0.31 +0.3 200,712 - Ac3H11_4600 0.31 -0.8 200,712 - Ac3H11_4600 0.31 +0.5 200,712 - Ac3H11_4600 0.31 +0.1 200,740 + Ac3H11_4600 0.33 -0.2 200,740 + Ac3H11_4600 0.33 -0.3 200,740 + Ac3H11_4600 0.33 -1.4 200,740 + Ac3H11_4600 0.33 +0.4 200,740 + Ac3H11_4600 0.33 -0.6 200,741 - Ac3H11_4600 0.33 -0.2 200,767 + Ac3H11_4600 0.35 -0.5 200,767 + Ac3H11_4600 0.35 +1.0 200,768 - Ac3H11_4600 0.35 +0.3 200,787 - Ac3H11_4600 0.37 -0.1 201,063 + Ac3H11_4600 0.56 +0.3 201,063 + Ac3H11_4600 0.56 +0.6 201,088 + Ac3H11_4600 0.58 -0.4 201,088 + Ac3H11_4600 0.58 +0.7 201,088 + Ac3H11_4600 0.58 -1.7 201,089 - Ac3H11_4600 0.58 -0.2 201,089 - Ac3H11_4600 0.58 +0.6 201,098 + Ac3H11_4600 0.59 +0.6 201,098 + Ac3H11_4600 0.59 -0.7 201,098 + Ac3H11_4600 0.59 +0.8 201,098 + Ac3H11_4600 0.59 +1.5 201,098 + Ac3H11_4600 0.59 -1.0 201,098 + Ac3H11_4600 0.59 -0.2 201,098 + Ac3H11_4600 0.59 +1.6 201,098 + Ac3H11_4600 0.59 +0.5 201,099 - Ac3H11_4600 0.59 -0.1 201,099 - Ac3H11_4600 0.59 -0.7 201,099 - Ac3H11_4600 0.59 +0.3 201,099 - Ac3H11_4600 0.59 +0.2 201,099 - Ac3H11_4600 0.59 +0.2 201,099 - Ac3H11_4600 0.59 +0.6 201,099 - Ac3H11_4600 0.59 +0.6 201,099 - Ac3H11_4600 0.59 +0.9 201,099 - Ac3H11_4600 0.59 -0.2 201,121 + Ac3H11_4600 0.60 +0.7 201,121 + Ac3H11_4600 0.60 -0.5 201,121 + Ac3H11_4600 0.60 -0.2 201,121 + Ac3H11_4600 0.60 +1.1 201,121 + Ac3H11_4600 0.60 -0.1 201,183 + Ac3H11_4600 0.65 +0.2 201,183 + Ac3H11_4600 0.65 -0.6 201,183 + Ac3H11_4600 0.65 -0.2 201,183 + Ac3H11_4600 0.65 -0.4 201,183 + Ac3H11_4600 0.65 +0.4 201,184 - Ac3H11_4600 0.65 -0.0 201,184 - Ac3H11_4600 0.65 -1.1 201,184 - Ac3H11_4600 0.65 +1.6 201,184 - Ac3H11_4600 0.65 -0.0
Or see this region's nucleotide sequence