Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4213 and Ac3H11_4214 are separated by 35 nucleotides Ac3H11_4214 and Ac3H11_4215 are separated by 38 nucleotides Ac3H11_4215 and Ac3H11_4216 are separated by 78 nucleotides
Ac3H11_4213 - Multicopper oxidase, at 482,521 to 483,933
_4213
Ac3H11_4214 - Copper tolerance protein, at 483,969 to 484,472
_4214
Ac3H11_4215 - hypothetical protein, at 484,511 to 484,852
_4215
Ac3H11_4216 - hypothetical protein, at 484,931 to 485,224
_4216
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.996 kb on - strand, within Ac3H11_4213 at 483.031 kb on + strand, within Ac3H11_4213 at 483.031 kb on + strand, within Ac3H11_4213 at 483.031 kb on + strand, within Ac3H11_4213 at 483.032 kb on - strand, within Ac3H11_4213 at 483.160 kb on + strand, within Ac3H11_4213 at 483.160 kb on + strand, within Ac3H11_4213 at 483.161 kb on - strand, within Ac3H11_4213 at 483.161 kb on - strand, within Ac3H11_4213 at 483.289 kb on - strand, within Ac3H11_4213 at 483.289 kb on - strand, within Ac3H11_4213 at 483.375 kb on + strand, within Ac3H11_4213 at 483.397 kb on + strand, within Ac3H11_4213 at 483.397 kb on + strand, within Ac3H11_4213 at 483.397 kb on + strand, within Ac3H11_4213 at 483.397 kb on + strand, within Ac3H11_4213 at 483.542 kb on + strand, within Ac3H11_4213 at 483.543 kb on - strand, within Ac3H11_4213 at 483.543 kb on - strand, within Ac3H11_4213 at 483.590 kb on - strand, within Ac3H11_4213 at 483.590 kb on - strand, within Ac3H11_4213 at 483.590 kb on - strand, within Ac3H11_4213 at 483.755 kb on - strand, within Ac3H11_4213 at 483.755 kb on - strand, within Ac3H11_4213 at 483.772 kb on + strand, within Ac3H11_4213 at 483.773 kb on - strand, within Ac3H11_4213 at 483.773 kb on - strand, within Ac3H11_4213 at 483.799 kb on + strand at 483.799 kb on + strand at 483.799 kb on + strand at 483.800 kb on - strand at 483.800 kb on - strand at 483.805 kb on + strand at 483.805 kb on + strand at 483.805 kb on + strand at 483.806 kb on - strand at 483.806 kb on - strand at 483.806 kb on - strand at 483.806 kb on - strand at 483.964 kb on + strand at 483.964 kb on + strand at 483.965 kb on - strand at 483.965 kb on - strand at 483.965 kb on - strand at 483.965 kb on - strand at 483.965 kb on - strand at 483.968 kb on + strand at 483.969 kb on - strand at 483.969 kb on - strand at 483.969 kb on - strand at 483.969 kb on - strand at 484.288 kb on - strand, within Ac3H11_4214 at 484.288 kb on - strand, within Ac3H11_4214 at 484.288 kb on - strand, within Ac3H11_4214 at 484.288 kb on - strand, within Ac3H11_4214 at 484.288 kb on - strand, within Ac3H11_4214 at 484.470 kb on + strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.531 kb on - strand at 484.543 kb on + strand at 484.543 kb on + strand at 484.544 kb on - strand at 484.850 kb on + strand at 484.851 kb on - strand at 484.851 kb on - strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.916 kb on + strand at 484.917 kb on - strand at 484.917 kb on - strand at 485.012 kb on + strand, within Ac3H11_4216 at 485.099 kb on - strand, within Ac3H11_4216 at 485.218 kb on + strand at 485.218 kb on + strand at 485.222 kb on + strand at 485.222 kb on + strand at 485.222 kb on + strand at 485.262 kb on - strand at 485.262 kb on - strand at 485.320 kb on - strand at 485.320 kb on - strand at 485.320 kb on - strand at 485.320 kb on - strand at 485.341 kb on + strand at 485.341 kb on + strand at 485.342 kb on - strand at 485.367 kb on + strand at 485.367 kb on + strand at 485.367 kb on + strand at 485.367 kb on + strand at 485.368 kb on - strand at 485.368 kb on - strand at 485.374 kb on + strand at 485.375 kb on - strand at 485.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 482,996 - Ac3H11_4213 0.34 +1.4 483,031 + Ac3H11_4213 0.36 +0.5 483,031 + Ac3H11_4213 0.36 +0.6 483,031 + Ac3H11_4213 0.36 -0.6 483,032 - Ac3H11_4213 0.36 +0.7 483,160 + Ac3H11_4213 0.45 +1.3 483,160 + Ac3H11_4213 0.45 -0.7 483,161 - Ac3H11_4213 0.45 +0.5 483,161 - Ac3H11_4213 0.45 -0.6 483,289 - Ac3H11_4213 0.54 +0.7 483,289 - Ac3H11_4213 0.54 -0.2 483,375 + Ac3H11_4213 0.60 +0.8 483,397 + Ac3H11_4213 0.62 +1.5 483,397 + Ac3H11_4213 0.62 +1.4 483,397 + Ac3H11_4213 0.62 +1.0 483,397 + Ac3H11_4213 0.62 +0.2 483,542 + Ac3H11_4213 0.72 -0.1 483,543 - Ac3H11_4213 0.72 -0.2 483,543 - Ac3H11_4213 0.72 -0.6 483,590 - Ac3H11_4213 0.76 +0.4 483,590 - Ac3H11_4213 0.76 -0.3 483,590 - Ac3H11_4213 0.76 -1.3 483,755 - Ac3H11_4213 0.87 -0.6 483,755 - Ac3H11_4213 0.87 +1.4 483,772 + Ac3H11_4213 0.89 +0.5 483,773 - Ac3H11_4213 0.89 +0.9 483,773 - Ac3H11_4213 0.89 -0.4 483,799 + +1.0 483,799 + +0.8 483,799 + +1.8 483,800 - +0.0 483,800 - -0.9 483,805 + +0.3 483,805 + -0.5 483,805 + -0.6 483,806 - -0.4 483,806 - -0.4 483,806 - +0.2 483,806 - -0.6 483,964 + -0.2 483,964 + -1.9 483,965 - +1.2 483,965 - +0.4 483,965 - -1.7 483,965 - +0.8 483,965 - -2.3 483,968 + -1.1 483,969 - +1.5 483,969 - -0.5 483,969 - -1.0 483,969 - -0.2 484,288 - Ac3H11_4214 0.63 -0.2 484,288 - Ac3H11_4214 0.63 -0.6 484,288 - Ac3H11_4214 0.63 +0.8 484,288 - Ac3H11_4214 0.63 +0.1 484,288 - Ac3H11_4214 0.63 -1.7 484,470 + +0.8 484,511 - -0.2 484,511 - +1.4 484,531 - +0.3 484,543 + -0.5 484,543 + +0.2 484,544 - -0.0 484,850 + +0.1 484,851 - +1.1 484,851 - -0.4 484,916 + -0.7 484,916 + -1.2 484,916 + +0.5 484,916 + +0.2 484,916 + +0.5 484,916 + -0.0 484,916 + +0.7 484,917 - +0.6 484,917 - -1.0 485,012 + Ac3H11_4216 0.28 +0.1 485,099 - Ac3H11_4216 0.57 +0.3 485,218 + +0.8 485,218 + +0.9 485,222 + -0.3 485,222 + -0.5 485,222 + +1.3 485,262 - +1.0 485,262 - +0.0 485,320 - -0.2 485,320 - +0.4 485,320 - -1.6 485,320 - +0.1 485,341 + +0.0 485,341 + -0.9 485,342 - -0.4 485,367 + -0.4 485,367 + +0.5 485,367 + +0.8 485,367 + +1.6 485,368 - -0.9 485,368 - +0.9 485,374 + +0.3 485,375 - -0.8 485,375 - +0.2
Or see this region's nucleotide sequence