Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4206 and Ac3H11_4207 are separated by 114 nucleotides Ac3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides Ac3H11_4208 and Ac3H11_4209 are separated by 272 nucleotides
Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624
_4206
Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858
_4207
Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243
_4208
Ac3H11_4209 - Heavy metal sensor histidine kinase, at 478,516 to 479,532
_4209
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 476.280 kb on + strand, within Ac3H11_4206 at 476.281 kb on - strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.306 kb on - strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.624 kb on + strand at 476.624 kb on + strand at 476.625 kb on - strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.685 kb on + strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.698 kb on + strand at 476.698 kb on + strand at 476.699 kb on - strand at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.768 kb on - strand, within Ac3H11_4207 at 476.861 kb on + strand at 476.861 kb on + strand at 476.861 kb on + strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.889 kb on - strand at 476.982 kb on + strand at 476.983 kb on - strand at 477.015 kb on + strand at 477.039 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.114 kb on + strand at 477.115 kb on - strand at 477.159 kb on + strand at 477.261 kb on + strand at 477.346 kb on - strand at 477.354 kb on + strand at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.883 kb on - strand, within Ac3H11_4208 at 477.993 kb on + strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 478.081 kb on + strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.145 kb on + strand at 478.145 kb on + strand at 478.146 kb on - strand at 478.147 kb on + strand at 478.147 kb on + strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.243 kb on + strand at 478.243 kb on + strand at 478.243 kb on + strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.247 kb on + strand at 478.248 kb on - strand at 478.275 kb on + strand at 478.276 kb on - strand at 478.302 kb on + strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.329 kb on + strand at 478.329 kb on + strand at 478.329 kb on + strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.385 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.469 kb on + strand at 478.469 kb on + strand at 478.470 kb on - strand at 478.543 kb on + strand at 478.543 kb on + strand at 478.565 kb on + strand at 478.565 kb on + strand at 478.566 kb on - strand at 478.566 kb on - strand at 478.566 kb on - strand at 478.642 kb on - strand, within Ac3H11_4209 at 478.829 kb on + strand, within Ac3H11_4209 at 478.830 kb on - strand, within Ac3H11_4209 at 478.830 kb on - strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 476,280 + Ac3H11_4206 0.44 -0.1 476,281 - Ac3H11_4206 0.45 -0.6 476,298 + Ac3H11_4206 0.47 -0.2 476,298 + Ac3H11_4206 0.47 +0.1 476,298 + Ac3H11_4206 0.47 +0.4 476,299 - Ac3H11_4206 0.48 -0.1 476,299 - Ac3H11_4206 0.48 +0.2 476,299 - Ac3H11_4206 0.48 -0.3 476,299 - Ac3H11_4206 0.48 +0.6 476,299 - Ac3H11_4206 0.48 -0.1 476,299 - Ac3H11_4206 0.48 +0.5 476,305 + Ac3H11_4206 0.48 +0.9 476,305 + Ac3H11_4206 0.48 -0.0 476,305 + Ac3H11_4206 0.48 +1.1 476,306 - Ac3H11_4206 0.49 +0.2 476,412 + Ac3H11_4206 0.66 +0.6 476,412 + Ac3H11_4206 0.66 -0.6 476,412 + Ac3H11_4206 0.66 +1.2 476,413 - Ac3H11_4206 0.66 +1.0 476,413 - Ac3H11_4206 0.66 +0.0 476,593 + -2.6 476,593 + -0.3 476,593 + -0.2 476,593 + +1.0 476,624 + +0.5 476,624 + -0.7 476,625 - +0.0 476,643 + +1.6 476,643 + +1.2 476,643 + +0.5 476,643 + +1.2 476,643 + +0.0 476,644 - +0.4 476,644 - -0.3 476,644 - +2.2 476,644 - -0.2 476,685 + +0.1 476,686 - +0.3 476,686 - -0.2 476,686 - +1.0 476,698 + +0.9 476,698 + +0.0 476,699 - +1.9 476,757 + Ac3H11_4207 0.15 -1.2 476,757 + Ac3H11_4207 0.15 -0.2 476,757 + Ac3H11_4207 0.15 +0.7 476,757 + Ac3H11_4207 0.15 -0.9 476,758 - Ac3H11_4207 0.16 +0.1 476,758 - Ac3H11_4207 0.16 +1.0 476,758 - Ac3H11_4207 0.16 +0.4 476,767 + Ac3H11_4207 0.23 -0.9 476,767 + Ac3H11_4207 0.23 +0.2 476,767 + Ac3H11_4207 0.23 +0.3 476,768 - Ac3H11_4207 0.24 +0.3 476,861 + -0.0 476,861 + +0.4 476,861 + -0.5 476,862 - -0.2 476,862 - +0.7 476,862 - +0.4 476,862 - -0.7 476,889 - -0.6 476,982 + -1.0 476,983 - -1.6 477,015 + +0.2 477,039 + -0.2 477,093 + +1.4 477,093 + +0.3 477,093 + +0.2 477,093 + +1.3 477,093 + -0.2 477,094 - -1.0 477,094 - +0.9 477,094 - -0.6 477,094 - +0.8 477,094 - +2.2 477,114 + +0.0 477,115 - -1.8 477,159 + -0.3 477,261 + +0.5 477,346 - +2.6 477,354 + -3.1 477,510 + Ac3H11_4208 0.25 +0.2 477,510 + Ac3H11_4208 0.25 -0.4 477,510 + Ac3H11_4208 0.25 +0.6 477,511 - Ac3H11_4208 0.26 +0.8 477,511 - Ac3H11_4208 0.26 +0.1 477,511 - Ac3H11_4208 0.26 -0.2 477,511 - Ac3H11_4208 0.26 -1.7 477,511 - Ac3H11_4208 0.26 -0.9 477,511 - Ac3H11_4208 0.26 +0.0 477,511 - Ac3H11_4208 0.26 -0.3 477,514 + Ac3H11_4208 0.26 -1.2 477,514 + Ac3H11_4208 0.26 -1.5 477,514 + Ac3H11_4208 0.26 -0.5 477,514 + Ac3H11_4208 0.26 +0.5 477,514 + Ac3H11_4208 0.26 -0.3 477,515 - Ac3H11_4208 0.26 +1.0 477,515 - Ac3H11_4208 0.26 +0.6 477,515 - Ac3H11_4208 0.26 +1.4 477,515 - Ac3H11_4208 0.26 +0.6 477,515 - Ac3H11_4208 0.26 -0.5 477,515 - Ac3H11_4208 0.26 +1.4 477,883 - Ac3H11_4208 0.63 +1.1 477,993 + Ac3H11_4208 0.74 +0.8 477,994 - Ac3H11_4208 0.75 +0.7 477,994 - Ac3H11_4208 0.75 +0.9 477,994 - Ac3H11_4208 0.75 +0.0 477,994 - Ac3H11_4208 0.75 +0.3 477,994 - Ac3H11_4208 0.75 +1.0 478,081 + Ac3H11_4208 0.83 -1.0 478,082 - Ac3H11_4208 0.84 +0.8 478,082 - Ac3H11_4208 0.84 -0.9 478,082 - Ac3H11_4208 0.84 +0.9 478,095 + Ac3H11_4208 0.85 -0.4 478,095 + Ac3H11_4208 0.85 +0.3 478,095 + Ac3H11_4208 0.85 -0.7 478,096 - Ac3H11_4208 0.85 +2.9 478,096 - Ac3H11_4208 0.85 -0.4 478,096 - Ac3H11_4208 0.85 +1.4 478,145 + -0.6 478,145 + -0.5 478,146 - +2.2 478,147 + +1.1 478,147 + -0.4 478,148 - -1.0 478,148 - +0.3 478,148 - -0.6 478,148 - -1.2 478,243 + +1.5 478,243 + +0.2 478,243 + +0.0 478,244 - +0.9 478,244 - -0.2 478,244 - -0.3 478,244 - -1.3 478,244 - -0.2 478,247 + +0.0 478,248 - +1.1 478,275 + +1.7 478,276 - +0.1 478,302 + +0.5 478,303 - -1.5 478,303 - -3.0 478,303 - -0.3 478,329 + +0.3 478,329 + +0.0 478,329 + -1.6 478,330 - +0.4 478,330 - -0.1 478,330 - +0.0 478,330 - -0.2 478,330 - +1.3 478,385 + -0.9 478,465 + +0.5 478,465 + +0.4 478,465 + -0.2 478,465 + -2.1 478,465 + +0.5 478,465 + -1.5 478,465 + +0.1 478,465 + +0.7 478,465 + +0.5 478,466 - +1.0 478,466 - +1.2 478,466 - -0.5 478,466 - -1.0 478,469 + -0.5 478,469 + -0.2 478,470 - -2.2 478,543 + -0.7 478,543 + -0.4 478,565 + -0.6 478,565 + +0.8 478,566 - +0.3 478,566 - +0.7 478,566 - +0.3 478,642 - Ac3H11_4209 0.12 -0.7 478,829 + Ac3H11_4209 0.31 +0.2 478,830 - Ac3H11_4209 0.31 -0.3 478,830 - Ac3H11_4209 0.31 -0.0 478,949 + Ac3H11_4209 0.43 +2.2 478,949 + Ac3H11_4209 0.43 -0.3 478,949 + Ac3H11_4209 0.43 +0.5 478,949 + Ac3H11_4209 0.43 -1.7 478,949 + Ac3H11_4209 0.43 +2.6 478,949 + Ac3H11_4209 0.43 +0.3 478,950 - Ac3H11_4209 0.43 -0.0 478,950 - Ac3H11_4209 0.43 -0.2 478,950 - Ac3H11_4209 0.43 +0.3 478,950 - Ac3H11_4209 0.43 +0.8 478,950 - Ac3H11_4209 0.43 -2.6 479,072 + Ac3H11_4209 0.55 -0.2 479,072 + Ac3H11_4209 0.55 +0.1 479,115 + Ac3H11_4209 0.59 +0.4 479,115 + Ac3H11_4209 0.59 +0.3
Or see this region's nucleotide sequence