Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3994

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3993 and Ac3H11_3994 are separated by 84 nucleotidesAc3H11_3994 and Ac3H11_3995 are separated by 98 nucleotidesAc3H11_3995 and Ac3H11_3996 overlap by 4 nucleotides Ac3H11_3993 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 228,949 to 230,133 _3993 Ac3H11_3994 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 230,218 to 231,819 _3994 Ac3H11_3995 - DNA-binding protein Fis, at 231,918 to 232,151 _3995 Ac3H11_3996 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 232,148 to 233,194 _3996 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 229.246 kb on + strand, within Ac3H11_3993at 229.246 kb on + strand, within Ac3H11_3993at 229.312 kb on + strand, within Ac3H11_3993at 229.312 kb on + strand, within Ac3H11_3993at 229.313 kb on - strand, within Ac3H11_3993at 229.370 kb on - strand, within Ac3H11_3993at 229.477 kb on + strand, within Ac3H11_3993at 229.477 kb on + strand, within Ac3H11_3993at 229.477 kb on + strand, within Ac3H11_3993at 229.477 kb on + strand, within Ac3H11_3993at 229.477 kb on + strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.478 kb on - strand, within Ac3H11_3993at 229.489 kb on + strand, within Ac3H11_3993at 229.490 kb on - strand, within Ac3H11_3993at 229.549 kb on + strand, within Ac3H11_3993at 229.549 kb on + strand, within Ac3H11_3993at 229.549 kb on + strand, within Ac3H11_3993at 229.550 kb on - strand, within Ac3H11_3993at 229.550 kb on - strand, within Ac3H11_3993at 229.610 kb on - strand, within Ac3H11_3993at 229.612 kb on + strand, within Ac3H11_3993at 229.612 kb on + strand, within Ac3H11_3993at 229.612 kb on + strand, within Ac3H11_3993at 229.612 kb on + strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.613 kb on - strand, within Ac3H11_3993at 229.870 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.897 kb on + strand, within Ac3H11_3993at 229.898 kb on - strand, within Ac3H11_3993at 229.898 kb on - strand, within Ac3H11_3993at 229.898 kb on - strand, within Ac3H11_3993at 229.930 kb on + strand, within Ac3H11_3993at 229.930 kb on + strand, within Ac3H11_3993at 229.930 kb on + strand, within Ac3H11_3993at 229.930 kb on + strand, within Ac3H11_3993at 229.931 kb on - strand, within Ac3H11_3993at 229.931 kb on - strand, within Ac3H11_3993at 230.056 kb on + strandat 230.056 kb on + strandat 230.056 kb on + strandat 230.056 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.101 kb on + strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.102 kb on - strandat 230.161 kb on + strandat 231.890 kb on - strandat 232.282 kb on + strand, within Ac3H11_3996at 232.283 kb on - strand, within Ac3H11_3996at 232.283 kb on - strand, within Ac3H11_3996at 232.283 kb on - strand, within Ac3H11_3996at 232.283 kb on - strand, within Ac3H11_3996at 232.283 kb on - strand, within Ac3H11_3996at 232.330 kb on - strand, within Ac3H11_3996at 232.378 kb on - strand, within Ac3H11_3996at 232.378 kb on - strand, within Ac3H11_3996at 232.386 kb on + strand, within Ac3H11_3996at 232.387 kb on - strand, within Ac3H11_3996at 232.387 kb on - strand, within Ac3H11_3996at 232.387 kb on - strand, within Ac3H11_3996at 232.387 kb on - strand, within Ac3H11_3996at 232.387 kb on - strand, within Ac3H11_3996at 232.638 kb on + strand, within Ac3H11_3996at 232.639 kb on - strand, within Ac3H11_3996at 232.639 kb on - strand, within Ac3H11_3996at 232.639 kb on - strand, within Ac3H11_3996at 232.657 kb on - strand, within Ac3H11_3996at 232.657 kb on - strand, within Ac3H11_3996

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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229,246 + Ac3H11_3993 0.25 +1.0
229,246 + Ac3H11_3993 0.25 +1.6
229,312 + Ac3H11_3993 0.31 +0.5
229,312 + Ac3H11_3993 0.31 -0.4
229,313 - Ac3H11_3993 0.31 +0.2
229,370 - Ac3H11_3993 0.36 +0.0
229,477 + Ac3H11_3993 0.45 +0.4
229,477 + Ac3H11_3993 0.45 -3.3
229,477 + Ac3H11_3993 0.45 -1.9
229,477 + Ac3H11_3993 0.45 -0.1
229,477 + Ac3H11_3993 0.45 +0.7
229,478 - Ac3H11_3993 0.45 +0.1
229,478 - Ac3H11_3993 0.45 -0.8
229,478 - Ac3H11_3993 0.45 -1.3
229,478 - Ac3H11_3993 0.45 +0.9
229,478 - Ac3H11_3993 0.45 +0.1
229,478 - Ac3H11_3993 0.45 +0.2
229,489 + Ac3H11_3993 0.46 -0.3
229,490 - Ac3H11_3993 0.46 -0.1
229,549 + Ac3H11_3993 0.51 +0.3
229,549 + Ac3H11_3993 0.51 +0.1
229,549 + Ac3H11_3993 0.51 -1.7
229,550 - Ac3H11_3993 0.51 +0.4
229,550 - Ac3H11_3993 0.51 +0.7
229,610 - Ac3H11_3993 0.56 -0.2
229,612 + Ac3H11_3993 0.56 -0.3
229,612 + Ac3H11_3993 0.56 +0.0
229,612 + Ac3H11_3993 0.56 -1.8
229,612 + Ac3H11_3993 0.56 -0.1
229,613 - Ac3H11_3993 0.56 -0.2
229,613 - Ac3H11_3993 0.56 -1.2
229,613 - Ac3H11_3993 0.56 +0.4
229,613 - Ac3H11_3993 0.56 +0.1
229,613 - Ac3H11_3993 0.56 +0.8
229,613 - Ac3H11_3993 0.56 -2.4
229,870 + Ac3H11_3993 0.78 +0.2
229,897 + Ac3H11_3993 0.80 +0.1
229,897 + Ac3H11_3993 0.80 +0.4
229,897 + Ac3H11_3993 0.80 -0.4
229,897 + Ac3H11_3993 0.80 +1.1
229,897 + Ac3H11_3993 0.80 -0.4
229,897 + Ac3H11_3993 0.80 +0.7
229,898 - Ac3H11_3993 0.80 -3.2
229,898 - Ac3H11_3993 0.80 +0.6
229,898 - Ac3H11_3993 0.80 -0.3
229,930 + Ac3H11_3993 0.83 -1.3
229,930 + Ac3H11_3993 0.83 -0.1
229,930 + Ac3H11_3993 0.83 -0.8
229,930 + Ac3H11_3993 0.83 -2.3
229,931 - Ac3H11_3993 0.83 +0.6
229,931 - Ac3H11_3993 0.83 -1.1
230,056 + +1.5
230,056 + -1.4
230,056 + +1.1
230,056 + -2.2
230,101 + +0.0
230,101 + -0.7
230,101 + -0.5
230,101 + -0.4
230,101 + -2.3
230,101 + -0.0
230,101 + -1.4
230,101 + -0.6
230,101 + -0.1
230,101 + -0.4
230,101 + -0.3
230,101 + -1.0
230,102 - -2.8
230,102 - -1.2
230,102 - +0.2
230,102 - +0.4
230,102 - -0.1
230,102 - -2.4
230,102 - +0.1
230,102 - -0.4
230,102 - -0.7
230,102 - +0.4
230,102 - +0.1
230,102 - +1.4
230,102 - +0.0
230,102 - -1.0
230,161 + +0.5
231,890 - -1.5
232,282 + Ac3H11_3996 0.13 -0.4
232,283 - Ac3H11_3996 0.13 +2.0
232,283 - Ac3H11_3996 0.13 +0.2
232,283 - Ac3H11_3996 0.13 -1.1
232,283 - Ac3H11_3996 0.13 -0.3
232,283 - Ac3H11_3996 0.13 -1.7
232,330 - Ac3H11_3996 0.17 -0.2
232,378 - Ac3H11_3996 0.22 -1.1
232,378 - Ac3H11_3996 0.22 -0.7
232,386 + Ac3H11_3996 0.23 -1.5
232,387 - Ac3H11_3996 0.23 -2.1
232,387 - Ac3H11_3996 0.23 -1.1
232,387 - Ac3H11_3996 0.23 -2.3
232,387 - Ac3H11_3996 0.23 +0.3
232,387 - Ac3H11_3996 0.23 -1.5
232,638 + Ac3H11_3996 0.47 -0.6
232,639 - Ac3H11_3996 0.47 -0.9
232,639 - Ac3H11_3996 0.47 +0.3
232,639 - Ac3H11_3996 0.47 +1.1
232,657 - Ac3H11_3996 0.49 +1.2
232,657 - Ac3H11_3996 0.49 -1.7

Or see this region's nucleotide sequence