Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3940

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3939 and Ac3H11_3940 are separated by 233 nucleotidesAc3H11_3940 and Ac3H11_3941 overlap by 4 nucleotides Ac3H11_3939 - Inner membrane protein YqiK, at 156,735 to 158,861 _3939 Ac3H11_3940 - hypothetical protein, at 159,095 to 159,268 _3940 Ac3H11_3941 - FIG01123212: hypothetical protein, at 159,265 to 164,895 _3941 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2at 158.860 kb on - strandat 158.940 kb on + strandat 159.110 kb on + strandat 159.270 kb on + strandat 159.271 kb on - strandat 159.271 kb on - strandat 159.271 kb on - strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.280 kb on - strandat 159.343 kb on + strandat 159.509 kb on - strandat 159.509 kb on - strandat 159.595 kb on + strandat 159.595 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.725 kb on - strandat 159.725 kb on - strandat 159.725 kb on - strandat 159.730 kb on + strandat 159.730 kb on + strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.733 kb on + strandat 159.734 kb on - strandat 159.734 kb on - strandat 159.734 kb on - strandat 159.862 kb on + strand, within Ac3H11_3941at 160.058 kb on - strand, within Ac3H11_3941at 160.058 kb on - strand, within Ac3H11_3941at 160.112 kb on - strand, within Ac3H11_3941at 160.174 kb on + strand, within Ac3H11_3941at 160.175 kb on - strand, within Ac3H11_3941at 160.175 kb on - strand, within Ac3H11_3941

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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158,860 - +1.0
158,940 + +0.8
159,110 + -0.0
159,270 + -1.5
159,271 - +0.0
159,271 - +2.0
159,271 - -0.9
159,279 + +0.5
159,279 + -0.5
159,280 - -2.1
159,343 + +0.2
159,509 - -1.3
159,509 - -0.9
159,595 + +0.5
159,595 + +1.4
159,724 + +0.6
159,724 + -1.1
159,724 + -0.2
159,724 + +0.6
159,724 + +0.9
159,724 + +1.0
159,725 - +0.2
159,725 - -1.3
159,725 - +1.3
159,730 + -0.2
159,730 + +0.2
159,731 - +0.7
159,731 - -0.0
159,731 - -0.6
159,731 - +0.6
159,733 + -1.9
159,734 - -0.0
159,734 - +0.7
159,734 - -0.2
159,862 + Ac3H11_3941 0.11 -0.3
160,058 - Ac3H11_3941 0.14 -1.2
160,058 - Ac3H11_3941 0.14 +1.5
160,112 - Ac3H11_3941 0.15 +2.6
160,174 + Ac3H11_3941 0.16 -1.1
160,175 - Ac3H11_3941 0.16 -1.1
160,175 - Ac3H11_3941 0.16 +0.0

Or see this region's nucleotide sequence