Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3936 and Ac3H11_3937 overlap by 4 nucleotides Ac3H11_3937 and Ac3H11_3938 are separated by 68 nucleotides Ac3H11_3938 and Ac3H11_3939 are separated by 103 nucleotides
Ac3H11_3936 - PspA/IM30 family protein, at 154,738 to 155,481
_3936
Ac3H11_3937 - hypothetical protein, at 155,478 to 155,918
_3937
Ac3H11_3938 - hypothetical protein, at 155,987 to 156,631
_3938
Ac3H11_3939 - Inner membrane protein YqiK, at 156,735 to 158,861
_3939
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1 at 155.074 kb on + strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.075 kb on - strand, within Ac3H11_3936 at 155.707 kb on - strand, within Ac3H11_3937 at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.036 kb on - strand at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.066 kb on - strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.582 kb on - strand at 156.602 kb on + strand at 156.603 kb on - strand at 156.906 kb on + strand at 156.906 kb on + strand at 156.907 kb on - strand at 156.907 kb on - strand at 157.188 kb on + strand, within Ac3H11_3939 at 157.251 kb on + strand, within Ac3H11_3939 at 157.252 kb on - strand, within Ac3H11_3939 at 157.252 kb on - strand, within Ac3H11_3939 at 157.278 kb on + strand, within Ac3H11_3939 at 157.337 kb on + strand, within Ac3H11_3939 at 157.337 kb on + strand, within Ac3H11_3939
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 155,074 + Ac3H11_3936 0.45 -0.5 155,074 + Ac3H11_3936 0.45 -0.3 155,075 - Ac3H11_3936 0.45 -0.7 155,707 - Ac3H11_3937 0.52 +0.0 155,964 + +0.4 155,964 + -1.0 155,964 + +0.5 155,964 + +0.2 155,965 - -0.2 155,965 - -0.7 155,965 - -0.4 155,965 - -0.5 155,965 - -0.4 155,965 - -0.2 155,965 - -0.8 156,035 + -1.3 156,035 + +0.2 156,035 + -0.1 156,036 - -0.8 156,065 + Ac3H11_3938 0.12 -1.1 156,065 + Ac3H11_3938 0.12 +0.8 156,065 + Ac3H11_3938 0.12 -0.2 156,066 - Ac3H11_3938 0.12 +1.7 156,176 + Ac3H11_3938 0.29 -0.8 156,176 + Ac3H11_3938 0.29 -0.0 156,177 - Ac3H11_3938 0.29 +0.0 156,177 - Ac3H11_3938 0.29 +1.1 156,177 - Ac3H11_3938 0.29 -1.3 156,582 - -1.1 156,602 + -1.3 156,603 - +0.5 156,906 + -0.9 156,906 + -0.1 156,907 - -0.2 156,907 - -0.3 157,188 + Ac3H11_3939 0.21 -0.5 157,251 + Ac3H11_3939 0.24 -0.8 157,252 - Ac3H11_3939 0.24 +0.0 157,252 - Ac3H11_3939 0.24 -0.3 157,278 + Ac3H11_3939 0.26 -2.4 157,337 + Ac3H11_3939 0.28 +0.0 157,337 + Ac3H11_3939 0.28 -2.2
Or see this region's nucleotide sequence