Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3934 and Ac3H11_4224 are separated by 54 nucleotides Ac3H11_4224 and Ac3H11_3935 are separated by 256 nucleotides Ac3H11_3935 and Ac3H11_3936 are separated by 68 nucleotides Ac3H11_3936 and Ac3H11_3937 overlap by 4 nucleotides Ac3H11_3937 and Ac3H11_3938 are separated by 68 nucleotides
Ac3H11_3934 - putative exported protein, at 149,614 to 153,870
_3934
Ac3H11_4224 - tRNA-Arg-CCT, at 153,925 to 153,996
_4224
Ac3H11_3935 - FIG006163: hypothetical protein, at 154,253 to 154,669
_3935
Ac3H11_3936 - PspA/IM30 family protein, at 154,738 to 155,481
_3936
Ac3H11_3937 - hypothetical protein, at 155,478 to 155,918
_3937
Ac3H11_3938 - hypothetical protein, at 155,987 to 156,631
_3938
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.739 kb on + strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.784 kb on + strand at 153.784 kb on + strand at 153.784 kb on + strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.862 kb on + strand at 153.863 kb on - strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.906 kb on - strand at 153.922 kb on + strand at 153.922 kb on + strand at 153.923 kb on - strand at 153.933 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.968 kb on - strand, within Ac3H11_4224 at 153.968 kb on - strand, within Ac3H11_4224 at 153.972 kb on - strand, within Ac3H11_4224 at 153.972 kb on - strand, within Ac3H11_4224 at 154.074 kb on + strand at 154.075 kb on - strand at 154.166 kb on - strand at 154.179 kb on + strand at 154.180 kb on - strand at 154.436 kb on + strand, within Ac3H11_3935 at 154.437 kb on - strand, within Ac3H11_3935 at 154.437 kb on - strand, within Ac3H11_3935 at 154.516 kb on - strand, within Ac3H11_3935 at 154.828 kb on + strand, within Ac3H11_3936 at 154.828 kb on + strand, within Ac3H11_3936 at 154.828 kb on + strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.075 kb on - strand, within Ac3H11_3936 at 155.707 kb on - strand, within Ac3H11_3937 at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.036 kb on - strand at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.066 kb on - strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 153,739 + -0.2 153,740 - +1.3 153,740 - +0.2 153,740 - +0.5 153,740 - +0.2 153,775 + -0.3 153,775 + +1.8 153,775 + -0.0 153,775 + +2.0 153,775 + -0.3 153,775 + -1.0 153,775 + -0.6 153,775 + -0.4 153,775 + +1.3 153,775 + +1.0 153,775 + -1.1 153,776 - -0.2 153,776 - -1.7 153,776 - -0.6 153,776 - -2.8 153,776 - +0.9 153,776 - -0.1 153,784 + +0.3 153,784 + +0.3 153,784 + +0.6 153,785 - +0.1 153,785 - +1.0 153,785 - +0.6 153,862 + +0.7 153,863 - +0.0 153,905 + +1.3 153,905 + +1.3 153,905 + -0.2 153,905 + -0.1 153,906 - +0.1 153,922 + -0.2 153,922 + -3.4 153,923 - -2.5 153,933 - Ac3H11_4224 0.11 -1.2 153,945 - Ac3H11_4224 0.28 -0.4 153,945 - Ac3H11_4224 0.28 -1.0 153,945 - Ac3H11_4224 0.28 -0.5 153,945 - Ac3H11_4224 0.28 +1.8 153,967 + Ac3H11_4224 0.58 +0.2 153,967 + Ac3H11_4224 0.58 -1.1 153,967 + Ac3H11_4224 0.58 -0.6 153,968 - Ac3H11_4224 0.60 -0.4 153,968 - Ac3H11_4224 0.60 -2.0 153,972 - Ac3H11_4224 0.65 -0.7 153,972 - Ac3H11_4224 0.65 +0.5 154,074 + -2.0 154,075 - -0.6 154,166 - +0.2 154,179 + +0.2 154,180 - +0.2 154,436 + Ac3H11_3935 0.44 +1.3 154,437 - Ac3H11_3935 0.44 -2.0 154,437 - Ac3H11_3935 0.44 +2.0 154,516 - Ac3H11_3935 0.63 +0.3 154,828 + Ac3H11_3936 0.12 +2.0 154,828 + Ac3H11_3936 0.12 +0.2 154,828 + Ac3H11_3936 0.12 +0.0 154,829 - Ac3H11_3936 0.12 -0.3 154,829 - Ac3H11_3936 0.12 -0.5 154,829 - Ac3H11_3936 0.12 -0.2 154,829 - Ac3H11_3936 0.12 -0.5 154,829 - Ac3H11_3936 0.12 +0.6 155,074 + Ac3H11_3936 0.45 -0.5 155,074 + Ac3H11_3936 0.45 -0.3 155,075 - Ac3H11_3936 0.45 -0.7 155,707 - Ac3H11_3937 0.52 +0.0 155,964 + +0.4 155,964 + -1.0 155,964 + +0.5 155,964 + +0.2 155,965 - -0.2 155,965 - -0.7 155,965 - -0.4 155,965 - -0.5 155,965 - -0.4 155,965 - -0.2 155,965 - -0.8 156,035 + -1.3 156,035 + +0.2 156,035 + -0.1 156,036 - -0.8 156,065 + Ac3H11_3938 0.12 -1.1 156,065 + Ac3H11_3938 0.12 +0.8 156,065 + Ac3H11_3938 0.12 -0.2 156,066 - Ac3H11_3938 0.12 +1.7 156,176 + Ac3H11_3938 0.29 -0.8 156,176 + Ac3H11_3938 0.29 -0.0 156,177 - Ac3H11_3938 0.29 +0.0 156,177 - Ac3H11_3938 0.29 +1.1 156,177 - Ac3H11_3938 0.29 -1.3
Or see this region's nucleotide sequence